metal-organic compounds
Potassium L-2-nitrimino-1,3-diazepane-4-carboxylate monohydrate
aMolecule Structure Research Center, National Academy of Sciences RA, Azatutyan Avenue 26, 375014 Yerevan, Republic of Armenia
*Correspondence e-mail: harkar@nfsat.am
The title compound, K+·C6H9N4O4−·H2O, crystallizes with the K atoms located on special positions related by pseudocentres of symmetry. Each K atom is coordinated by six O-atom donors. The N and water H atoms are involved in inter- and intramolecular N—H⋯O, N—H⋯N and O—H⋯O hydrogen bonding. The data indicate inversion twinning.
Related literature
For related literature, see: Apreyan & Petrosyan (2008); Apreyan et al. (2008a,b); Karapetyan (2008a,b); Karapetyan et al. (2007); Kurtz & Perry (1968); Paul et al. (1961); Petrosyan et al. (2005).
Experimental
Crystal data
|
Data collection
|
Data collection: DATCOL in CAD-4 Software (Enraf–Nonius, 1988); cell LS in CAD-4 Software; data reduction: HELENA (Spek, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536808023817/hg2410sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808023817/hg2410Isup2.hkl
The title compound was synthesized from a mixture of aqueous solutions containing L-nitroarginine (2 g, Sigma-Aldrich) and KOH (0.512 g) at room temperature. Single crystals of the title compound were obtained by slow evaporation of the solution. At 97° C decomposition of the crystals was observed.
The data set was collected in a full sphere of
I222 was chosen on the basis of the powder second harmonic of YAG:Nb laser generation property of the crystals of the title compound. In spite of the fact that all H atoms appear in difference Fourier maps in reasonable positions, they became unacceptable after Because of this, all the H atoms except those belonging to the water molecule were placed in geometrically calculated positions and included in the in a riding model approximation, with Uiso(H) = 1.2Ueq(carrier atom). The positions of the H atoms of the water molecule were located in difference Fourier maps and included in the with fixed O—H (0.85 Å), H···H (1.35 Å) distances and isotropic temperature parameters Uiso(H) = 1.4Ueq(O). The has been determined using L-nitroarginine of known absolute configuration.Data collection: DATCOL in CAD-4 Software (Enraf–Nonius, 1988); cell
LS in CAD-4 Software (Enraf–Nonius, 1988); data reduction: HELENA (Spek, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).K+·C6H9N4O4−·H2O | F(000) = 1072 |
Mr = 258.29 | Dx = 1.586 Mg m−3 |
Orthorhombic, I222 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: I 2 2 | Cell parameters from 24 reflections |
a = 7.3883 (15) Å | θ = 14–16° |
b = 10.087 (2) Å | µ = 0.51 mm−1 |
c = 29.031 (6) Å | T = 293 K |
V = 2163.5 (8) Å3 | Prism, yellow |
Z = 8 | 0.21 × 0.14 × 0.11 mm |
Enraf–Nonius CAD-4 diffractometer | Rint = 0.030 |
Radiation source: fine-focus sealed tube | θmax = 30.0°, θmin = 2.1° |
Graphite monochromator | h = −10→10 |
ω/2θ scans | k = −13→13 |
5030 measured reflections | l = −38→38 |
3141 independent reflections | 3 standard reflections every 400 reflections |
1726 reflections with I > 2σ(I) | intensity decay: none |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.065 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.193 | w = 1/[σ2(Fo2) + (0.0676P)2 + 6.1136P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
3141 reflections | Δρmax = 0.43 e Å−3 |
154 parameters | Δρmin = −0.39 e Å−3 |
3 restraints | Absolute structure: Flack (1983), 1350 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.48 (20) |
K+·C6H9N4O4−·H2O | V = 2163.5 (8) Å3 |
Mr = 258.29 | Z = 8 |
Orthorhombic, I222 | Mo Kα radiation |
a = 7.3883 (15) Å | µ = 0.51 mm−1 |
b = 10.087 (2) Å | T = 293 K |
c = 29.031 (6) Å | 0.21 × 0.14 × 0.11 mm |
Enraf–Nonius CAD-4 diffractometer | Rint = 0.030 |
5030 measured reflections | 3 standard reflections every 400 reflections |
3141 independent reflections | intensity decay: none |
1726 reflections with I > 2σ(I) |
R[F2 > 2σ(F2)] = 0.065 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.193 | Δρmax = 0.43 e Å−3 |
S = 1.04 | Δρmin = −0.39 e Å−3 |
3141 reflections | Absolute structure: Flack (1983), 1350 Friedel pairs |
154 parameters | Absolute structure parameter: 0.48 (20) |
3 restraints |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
K1 | 0.5000 | 0.5000 | 0.26313 (7) | 0.0481 (5) | |
K2 | 0.0000 | 0.5000 | 0.26268 (8) | 0.0536 (5) | |
O1 | 0.2429 (10) | 0.6833 (3) | 0.28276 (9) | 0.0510 (8) | |
O2 | 0.2513 (10) | 0.8993 (3) | 0.29658 (9) | 0.0618 (10) | |
O3 | 0.2476 (15) | 1.1286 (3) | 0.37039 (10) | 0.0905 (16) | |
O4 | 0.2389 (10) | 1.2557 (3) | 0.42935 (11) | 0.0723 (12) | |
O5 | 0.2461 (12) | 0.3267 (3) | 0.30317 (11) | 0.0644 (10) | |
N1 | 0.2755 (14) | 0.8784 (3) | 0.38382 (11) | 0.0630 (19) | |
H2 | 0.3373 | 0.9320 | 0.3670 | 0.076* | |
N2 | 0.2659 (10) | 0.8275 (3) | 0.46137 (11) | 0.0583 (14) | |
H9 | 0.3224 | 0.8526 | 0.4858 | 0.070* | |
N3 | 0.2516 (11) | 1.0441 (3) | 0.44244 (10) | 0.0490 (10) | |
N4 | 0.2478 (12) | 1.1416 (3) | 0.41290 (11) | 0.0526 (10) | |
C1 | 0.2419 (12) | 0.7820 (4) | 0.30906 (13) | 0.0433 (11) | |
C2 | 0.2101 (7) | 0.7544 (4) | 0.36059 (14) | 0.0397 (12) | |
H1 | 0.0794 | 0.7470 | 0.3657 | 0.048* | |
C3 | 0.294 (2) | 0.6381 (6) | 0.37834 (19) | 0.118 (5) | |
H4 | 0.4240 | 0.6514 | 0.3793 | 0.142* | |
H3 | 0.2697 | 0.5645 | 0.3578 | 0.142* | |
C4 | 0.2262 (15) | 0.6022 (4) | 0.42740 (17) | 0.069 (2) | |
H5 | 0.1150 | 0.5526 | 0.4232 | 0.082* | |
H6 | 0.3139 | 0.5404 | 0.4399 | 0.082* | |
C5 | 0.1931 (9) | 0.6894 (5) | 0.46054 (17) | 0.0601 (19) | |
H7 | 0.2319 | 0.6481 | 0.4891 | 0.072* | |
H8 | 0.0624 | 0.6974 | 0.4624 | 0.072* | |
C6 | 0.2498 (15) | 0.9152 (4) | 0.42687 (13) | 0.0475 (10) | |
H10 | 0.288 (8) | 0.279 (5) | 0.3251 (13) | 0.07 (2)* | |
H11 | 0.288 (14) | 0.287 (8) | 0.2790 (13) | 0.16 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
K1 | 0.0547 (12) | 0.0388 (11) | 0.0507 (11) | 0.0026 (10) | 0.000 | 0.000 |
K2 | 0.0566 (12) | 0.0404 (12) | 0.0637 (13) | −0.0021 (11) | 0.000 | 0.000 |
O1 | 0.070 (2) | 0.0423 (15) | 0.0409 (14) | 0.000 (3) | 0.008 (3) | −0.0129 (13) |
O2 | 0.115 (3) | 0.0374 (15) | 0.0326 (13) | 0.013 (4) | −0.002 (4) | 0.0002 (11) |
O3 | 0.202 (5) | 0.0350 (16) | 0.0343 (15) | −0.001 (5) | −0.009 (5) | 0.0075 (12) |
O4 | 0.136 (4) | 0.0279 (13) | 0.0534 (18) | 0.006 (4) | −0.007 (4) | −0.0024 (13) |
O5 | 0.103 (3) | 0.0470 (17) | 0.0436 (17) | −0.009 (4) | −0.003 (4) | 0.0143 (15) |
N1 | 0.134 (6) | 0.0286 (16) | 0.0266 (16) | −0.021 (4) | 0.012 (3) | −0.0014 (12) |
N2 | 0.115 (4) | 0.0309 (16) | 0.0291 (15) | −0.017 (3) | 0.012 (4) | −0.0006 (13) |
N3 | 0.087 (3) | 0.0286 (14) | 0.0312 (15) | 0.007 (4) | 0.006 (4) | 0.0001 (12) |
N4 | 0.088 (3) | 0.0310 (16) | 0.0393 (17) | 0.005 (4) | 0.014 (4) | 0.0017 (13) |
C1 | 0.057 (3) | 0.039 (2) | 0.0339 (18) | 0.007 (4) | −0.010 (3) | −0.0022 (15) |
C2 | 0.049 (3) | 0.0352 (19) | 0.0344 (19) | 0.004 (2) | −0.002 (2) | −0.0046 (16) |
C3 | 0.267 (17) | 0.043 (3) | 0.043 (3) | 0.046 (7) | −0.002 (6) | 0.008 (2) |
C4 | 0.125 (6) | 0.029 (2) | 0.052 (2) | −0.013 (4) | −0.008 (5) | 0.0091 (18) |
C5 | 0.098 (6) | 0.037 (2) | 0.045 (3) | 0.001 (3) | 0.004 (3) | 0.011 (2) |
C6 | 0.079 (3) | 0.0335 (17) | 0.0298 (17) | −0.002 (5) | 0.001 (5) | −0.0016 (14) |
K1—O1 | 2.712 (5) | O4—N4 | 1.247 (4) |
K1—O1i | 2.712 (5) | O5—H10 | 0.856 (19) |
K1—O2ii | 2.736 (6) | O5—H11 | 0.87 (2) |
K1—O2iii | 2.736 (6) | N1—C6 | 1.318 (5) |
K1—O5i | 2.815 (7) | N1—C2 | 1.502 (6) |
K1—O5 | 2.815 (7) | N1—H2 | 0.8600 |
K1—C1ii | 3.524 (5) | N2—C6 | 1.342 (5) |
K1—C1iii | 3.524 (5) | N2—C5 | 1.494 (7) |
K1—K2 | 3.6942 (8) | N2—H9 | 0.8600 |
K1—K2iv | 3.6942 (8) | N3—N4 | 1.305 (4) |
K1—H11 | 2.70 (11) | N3—C6 | 1.377 (5) |
K2—O1 | 2.642 (5) | C1—C2 | 1.540 (6) |
K2—O1v | 2.642 (5) | C1—K1viii | 3.524 (5) |
K2—O2vi | 2.714 (6) | C2—C3 | 1.423 (9) |
K2—O2ii | 2.714 (6) | C2—H1 | 0.9800 |
K2—O5 | 2.783 (6) | C3—C4 | 1.552 (9) |
K2—O5v | 2.783 (6) | C3—H4 | 0.9700 |
K2—K1vii | 3.6942 (8) | C3—H3 | 0.9700 |
K2—H11 | 3.06 (6) | C4—C5 | 1.326 (7) |
O1—C1 | 1.255 (4) | C4—H5 | 0.9700 |
O2—C1 | 1.239 (5) | C4—H6 | 0.9700 |
O2—K2viii | 2.714 (6) | C5—H7 | 0.9700 |
O2—K1viii | 2.736 (6) | C5—H8 | 0.9700 |
O3—N4 | 1.241 (4) | ||
O1—K1—O1i | 155.74 (15) | O2ii—K2—K1vii | 132.78 (15) |
O1—K1—O2ii | 84.89 (16) | O5—K2—K1vii | 130.69 (16) |
O1i—K1—O2ii | 110.81 (14) | O5v—K2—K1vii | 49.08 (15) |
O1—K1—O2iii | 110.81 (14) | O1—K2—K1 | 47.16 (12) |
O1i—K1—O2iii | 84.89 (16) | O1v—K2—K1 | 132.72 (12) |
O2ii—K1—O2iii | 101.4 (2) | O2vi—K2—K1 | 132.78 (15) |
O1—K1—O5i | 87.51 (15) | O2ii—K2—K1 | 47.57 (13) |
O1i—K1—O5i | 82.52 (14) | O5—K2—K1 | 49.08 (15) |
O2ii—K1—O5i | 160.81 (11) | O5v—K2—K1 | 130.69 (16) |
O2iii—K1—O5i | 65.09 (14) | K1vii—K2—K1 | 179.60 (13) |
O1—K1—O5 | 82.52 (14) | O1—K2—H11 | 89 (2) |
O1i—K1—O5 | 87.51 (15) | O1v—K2—H11 | 87 (2) |
O2ii—K1—O5 | 65.09 (14) | O2vi—K2—H11 | 146.2 (10) |
O2iii—K1—O5 | 160.81 (11) | O2ii—K2—H11 | 50.6 (8) |
O5i—K1—O5 | 131.23 (19) | O5—K2—H11 | 16.1 (6) |
O1—K1—C1ii | 101.25 (17) | O5v—K2—H11 | 146.1 (6) |
O1i—K1—C1ii | 93.15 (14) | K1vii—K2—H11 | 134 (2) |
O2ii—K1—C1ii | 17.69 (15) | K1—K2—H11 | 46 (2) |
O2iii—K1—C1ii | 101.48 (14) | C1—O1—K2 | 133.3 (6) |
O5i—K1—C1ii | 166.12 (17) | C1—O1—K1 | 132.3 (5) |
O5—K1—C1ii | 61.33 (12) | K2—O1—K1 | 87.26 (8) |
O1—K1—C1iii | 93.15 (14) | C1—O2—K2viii | 125.5 (5) |
O1i—K1—C1iii | 101.25 (17) | C1—O2—K1viii | 120.1 (6) |
O2ii—K1—C1iii | 101.48 (14) | K2viii—O2—K1viii | 85.34 (8) |
O2iii—K1—C1iii | 17.69 (15) | K2—O5—K1 | 82.59 (8) |
O5i—K1—C1iii | 61.33 (12) | K2—O5—H10 | 155 (4) |
O5—K1—C1iii | 166.12 (17) | K1—O5—H10 | 114 (5) |
C1ii—K1—C1iii | 107.02 (17) | K2—O5—H11 | 101 (5) |
O1—K1—K2 | 45.59 (12) | K1—O5—H11 | 74 (7) |
O1i—K1—K2 | 134.53 (12) | H10—O5—H11 | 102 (3) |
O2ii—K1—K2 | 47.09 (13) | C6—N1—C2 | 127.9 (6) |
O2iii—K1—K2 | 132.56 (15) | C6—N1—H2 | 116.0 |
O5i—K1—K2 | 131.90 (15) | C2—N1—H2 | 116.0 |
O5—K1—K2 | 48.33 (15) | C6—N2—C5 | 124.8 (5) |
C1ii—K1—K2 | 59.38 (14) | C6—N2—H9 | 117.6 |
C1iii—K1—K2 | 120.34 (15) | C5—N2—H9 | 117.6 |
O1—K1—K2iv | 134.53 (12) | N4—N3—C6 | 119.7 (3) |
O1i—K1—K2iv | 45.59 (12) | O3—N4—O4 | 118.6 (3) |
O2ii—K1—K2iv | 132.56 (15) | O3—N4—N3 | 125.0 (3) |
O2iii—K1—K2iv | 47.09 (13) | O4—N4—N3 | 116.4 (3) |
O5i—K1—K2iv | 48.33 (15) | O2—C1—O1 | 125.4 (4) |
O5—K1—K2iv | 131.90 (15) | O2—C1—C2 | 117.8 (3) |
C1ii—K1—K2iv | 120.34 (15) | O1—C1—C2 | 116.6 (4) |
C1iii—K1—K2iv | 59.38 (14) | O2—C1—K1viii | 42.2 (4) |
K2—K1—K2iv | 179.60 (13) | O1—C1—K1viii | 97.8 (3) |
O1—K1—H11 | 95.8 (12) | C2—C1—K1viii | 127.8 (4) |
O1i—K1—H11 | 80.1 (15) | C3—C2—N1 | 112.6 (5) |
O2ii—K1—H11 | 54.4 (13) | C3—C2—C1 | 115.8 (5) |
O2iii—K1—H11 | 142.9 (4) | N1—C2—C1 | 103.6 (4) |
O5i—K1—H11 | 144.2 (12) | C3—C2—H1 | 108.2 |
O5—K1—H11 | 17.9 (4) | N1—C2—H1 | 108.2 |
C1ii—K1—H11 | 46.4 (10) | C1—C2—H1 | 108.2 |
C1iii—K1—H11 | 153.2 (8) | C2—C3—C4 | 112.6 (8) |
K2—K1—H11 | 54.5 (15) | C2—C3—H4 | 109.1 |
K2iv—K1—H11 | 125.5 (15) | C4—C3—H4 | 109.1 |
O1—K2—O1v | 154.51 (16) | C2—C3—H3 | 109.1 |
O1—K2—O2vi | 109.73 (14) | C4—C3—H3 | 109.1 |
O1v—K2—O2vi | 86.68 (16) | H4—C3—H3 | 107.8 |
O1—K2—O2ii | 86.68 (16) | C5—C4—C3 | 124.8 (4) |
O1v—K2—O2ii | 109.73 (14) | C5—C4—H5 | 106.1 |
O2vi—K2—O2ii | 101.3 (2) | C3—C4—H5 | 106.1 |
O1—K2—O5 | 84.41 (15) | C5—C4—H6 | 106.1 |
O1v—K2—O5 | 84.89 (16) | C3—C4—H6 | 106.1 |
O2vi—K2—O5 | 160.93 (12) | H5—C4—H6 | 106.3 |
O2ii—K2—O5 | 65.81 (15) | C4—C5—N2 | 124.3 (5) |
O1—K2—O5v | 84.89 (16) | C4—C5—H7 | 106.3 |
O1v—K2—O5v | 84.41 (15) | N2—C5—H7 | 106.3 |
O2vi—K2—O5v | 65.81 (15) | C4—C5—H8 | 106.3 |
O2ii—K2—O5v | 160.93 (12) | N2—C5—H8 | 106.3 |
O5—K2—O5v | 130.0 (2) | H7—C5—H8 | 106.4 |
O1—K2—K1vii | 132.72 (12) | N1—C6—N2 | 120.6 (4) |
O1v—K2—K1vii | 47.16 (12) | N1—C6—N3 | 125.2 (4) |
O2vi—K2—K1vii | 47.57 (13) | N2—C6—N3 | 112.1 (3) |
O1v—K2—O1—C1 | −49.9 (4) | O2ii—K1—O5—K2 | −53.73 (14) |
O2vi—K2—O1—C1 | 77.6 (4) | O2iii—K1—O5—K2 | −101.4 (5) |
O2ii—K2—O1—C1 | 178.5 (4) | O5i—K1—O5—K2 | 114.12 (11) |
O5—K2—O1—C1 | −115.5 (4) | C1ii—K1—O5—K2 | −73.12 (16) |
O5v—K2—O1—C1 | 15.6 (4) | C1iii—K1—O5—K2 | −38.4 (6) |
K1vii—K2—O1—C1 | 27.7 (5) | K2iv—K1—O5—K2 | −179.55 (14) |
K1—K2—O1—C1 | −151.7 (4) | C6—N3—N4—O3 | −2.1 (16) |
O1v—K2—O1—K1 | 101.82 (8) | C6—N3—N4—O4 | 175.9 (10) |
O2vi—K2—O1—K1 | −130.65 (16) | K2viii—O2—C1—O1 | −49.8 (12) |
O2ii—K2—O1—K1 | −29.78 (10) | K1viii—O2—C1—O1 | 57.6 (12) |
O5—K2—O1—K1 | 36.21 (12) | K2viii—O2—C1—C2 | 135.8 (5) |
O5v—K2—O1—K1 | 167.33 (12) | K1viii—O2—C1—C2 | −116.8 (5) |
K1vii—K2—O1—K1 | 179.47 (16) | K2viii—O2—C1—K1viii | −107.4 (3) |
O1i—K1—O1—C1 | 49.8 (4) | K2—O1—C1—O2 | −114.3 (9) |
O2ii—K1—O1—C1 | −178.2 (4) | K1—O1—C1—O2 | 105.4 (9) |
O2iii—K1—O1—C1 | −77.9 (4) | K2—O1—C1—C2 | 60.2 (8) |
O5i—K1—O1—C1 | −15.8 (4) | K1—O1—C1—C2 | −80.1 (8) |
O5—K1—O1—C1 | 116.3 (4) | K2—O1—C1—K1viii | −79.4 (3) |
C1ii—K1—O1—C1 | 175.0 (4) | K1—O1—C1—K1viii | 140.3 (2) |
C1iii—K1—O1—C1 | −76.9 (5) | C6—N1—C2—C3 | −67.0 (11) |
K2—K1—O1—C1 | 152.2 (4) | C6—N1—C2—C1 | 167.2 (9) |
K2iv—K1—O1—C1 | −28.3 (5) | O2—C1—C2—C3 | −146.7 (9) |
O1i—K1—O1—K2 | −102.45 (8) | O1—C1—C2—C3 | 38.4 (11) |
O2ii—K1—O1—K2 | 29.60 (10) | K1viii—C1—C2—C3 | 164.0 (6) |
O2iii—K1—O1—K2 | 129.84 (15) | O2—C1—C2—N1 | −22.9 (10) |
O5i—K1—O1—K2 | −168.04 (12) | O1—C1—C2—N1 | 162.2 (8) |
O5—K1—O1—K2 | −35.89 (12) | K1viii—C1—C2—N1 | −72.2 (6) |
C1ii—K1—O1—K2 | 22.82 (11) | N1—C2—C3—C4 | 72.2 (10) |
C1iii—K1—O1—K2 | 130.87 (14) | C1—C2—C3—C4 | −168.9 (7) |
K2iv—K1—O1—K2 | 179.46 (17) | C2—C3—C4—C5 | −39.8 (16) |
O1—K2—O5—K1 | −34.97 (11) | C3—C4—C5—N2 | −19.3 (15) |
O1v—K2—O5—K1 | 168.20 (12) | C6—N2—C5—C4 | 52.9 (12) |
O2vi—K2—O5—K1 | 104.1 (5) | C2—N1—C6—N2 | 42.7 (16) |
O2ii—K2—O5—K1 | 53.89 (13) | C2—N1—C6—N3 | −154.9 (9) |
O5v—K2—O5—K1 | −113.49 (10) | C5—N2—C6—N1 | −43.0 (15) |
K1vii—K2—O5—K1 | −179.56 (14) | C5—N2—C6—N3 | 152.5 (8) |
O1—K1—O5—K2 | 34.09 (11) | N4—N3—C6—N1 | 12.3 (17) |
O1i—K1—O5—K2 | −168.08 (12) | N4—N3—C6—N2 | 176.0 (9) |
Symmetry codes: (i) −x+1, −y+1, z; (ii) −x+1/2, y−1/2, −z+1/2; (iii) x+1/2, −y+3/2, −z+1/2; (iv) x+1, y, z; (v) −x, −y+1, z; (vi) x−1/2, −y+3/2, −z+1/2; (vii) x−1, y, z; (viii) −x+1/2, y+1/2, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H11···O1ii | 0.87 (2) | 2.09 (5) | 2.885 (5) | 153 (10) |
O5—H10···O3ix | 0.86 (2) | 2.03 (4) | 2.793 (4) | 148 (6) |
N2—H9···N3x | 0.86 | 2.39 | 3.080 (4) | 138 |
N1—H2···O3 | 0.86 | 2.09 | 2.561 (5) | 114 |
Symmetry codes: (ii) −x+1/2, y−1/2, −z+1/2; (ix) x, y−1, z; (x) x, −y+2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | K+·C6H9N4O4−·H2O |
Mr | 258.29 |
Crystal system, space group | Orthorhombic, I222 |
Temperature (K) | 293 |
a, b, c (Å) | 7.3883 (15), 10.087 (2), 29.031 (6) |
V (Å3) | 2163.5 (8) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.51 |
Crystal size (mm) | 0.21 × 0.14 × 0.11 |
Data collection | |
Diffractometer | Enraf–Nonius CAD-4 diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5030, 3141, 1726 |
Rint | 0.030 |
(sin θ/λ)max (Å−1) | 0.703 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.065, 0.193, 1.04 |
No. of reflections | 3141 |
No. of parameters | 154 |
No. of restraints | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.43, −0.39 |
Absolute structure | Flack (1983), 1350 Friedel pairs |
Absolute structure parameter | 0.48 (20) |
Computer programs: DATCOL in CAD-4 Software (Enraf–Nonius, 1988), LS in CAD-4 Software (Enraf–Nonius, 1988), HELENA (Spek, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H11···O1i | 0.87 (2) | 2.09 (5) | 2.885 (5) | 153 (10) |
O5—H10···O3ii | 0.856 (19) | 2.03 (4) | 2.793 (4) | 148 (6) |
N2—H9···N3iii | 0.86 | 2.39 | 3.080 (4) | 137.8 |
N1—H2···O3 | 0.86 | 2.09 | 2.561 (5) | 113.6 |
Symmetry codes: (i) −x+1/2, y−1/2, −z+1/2; (ii) x, y−1, z; (iii) x, −y+2, −z+1. |
Acknowledgements
The author expresses his thanks to Dr R. A. Apreyan and Dr A. M. Petrosyan for providing the crystals and to Dr R. A. Tamazyan for valuable discussion of the results.
References
Apreyan, R. A., Karapetyan, H. A. & Petrosyan, A. M. (2008a). J. Mol. Struct. 874, 187–193. Web of Science CSD CrossRef CAS Google Scholar
Apreyan, R. A., Karapetyan, H. A. & Petrosyan, A. M. (2008b). J. Mol. Struct. 875, 272–281. Web of Science CSD CrossRef CAS Google Scholar
Apreyan, R. A. & Petrosyan, A. M. (2008). In preparation. Google Scholar
Enraf–Nonius (1988). CAD-4 Manual. Enraf–Nonius, Delft, The Netherlands. Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
Karapetyan, H. A. (2008a). Acta Cryst. E64, o943. Web of Science CSD CrossRef IUCr Journals Google Scholar
Karapetyan, H. A. (2008b). Acta Cryst. E64, o1222. Web of Science CSD CrossRef IUCr Journals Google Scholar
Karapetyan, H. A., Antipin, M. Yu., Sukiasyan, R. P. & Petrosyan, A. M. (2007). J. Mol. Struct. 831, 90–96. Web of Science CSD CrossRef CAS Google Scholar
Kurtz, S. K. & Perry, T. T. (1968). J. Appl. Phys. 39, 3798–3812. CrossRef CAS Web of Science Google Scholar
Paul, R., Anderson, G. W. & Callahan, F. M. (1961). J. Org. Chem. 26, 3347–3350. CrossRef Web of Science Google Scholar
Petrosyan, A. M., Sukiasyan, R. P., Karapetyan, H. A., Antipin, M. Yu. & Apreyan, R. A. (2005). J. Cryst. Growth, 275, e1927–e1933. Web of Science CrossRef CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (1997). HELENA. University of Utrecht, The Netherlands. Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Cyclic L-2-nitrimino-1,3-diazepane-4-carboxylic acid (L-NIDCA), produced by elimination of amine from L-nitroarginine (Paul et al., 1961) , may generate new non-linear optical materials like L-nitroarginine itself [Apreyan et al. (2008a, 2008b); Karapetyan et al.(2007); Petrosyan et al. (2005); the crystal structures of L-NIDCA and its monohydrate have been recently reported [Karapetyan (2008a, 2008b)].
This paper presents a structural study of the potassium salt of L-NIDCA monohydrate. The structure was solved and refined in the orthorhombic unit cell with I222 space group. The choice of the non-centric space group was based on the generation of second harmonic observed on a powder sample (YAG:Nd laser, Kurtz-Perry method [Kurtz & Perry,1968]). In this structure, two independent potassium cations occupy special positions. These potassium atoms are located about pseudo-inversion centers, which is most likely the reason for the presence of high level pseudosymmetry in the structure. Both potassium cations are coordinated by six oxygen atoms with K···O bond lengths in the ranges 2.712 (5)-2.815 (7) Å for K1 and 2.642 (5)-2.783 (6) Å for K2.
A view of the asymmetric unit is shown in Fig. 1. The high value of Ueq of atom C3 of the 1,3-diazepane ring compared to those of its neighbors indicates potential disorder of this atom. In the crystal structure, the nitrogen-bound H atoms and the water H atoms are involved in N—H···O, N—H···N and O—H···O hydrogen bonding (Table 1), one of them being intra- and the other three intermolecular, linking anions and water molecules in infinite layers parallel to the bc plane (Fig. 2).