metal-organic compounds
catena-Poly[[[aquatripyridinecobalt(II)]-μ-5-amino-2,4,6-triiodoisophthalato-κ2O1:O3] pyridine solvate]
aDepartment of Chemistry, Huaiyin Teachers College, Huai'an 223300, Jiangsu, People's Republic of China
*Correspondence e-mail: yuzhang@hytc.edu.cn
The reaction of cobalt(II) nitrate with 5-amino-2,4,6-triiodoisophthalic acid (ATPA) in pyridine solution leads to the formation of the title compound, {[Co(C8H2I3NO4)(C5H5N)3(H2O)]·C5H5N}n. The Co2+ ion is six-coordinated by three N atoms, one water O atom and two O atoms from two ATPA ligands to form a distorted octahedral geometry. The two carboxylate groups of ATPA act as bridging ligands connecting the CoII metal centers to form one-dimensional zigzag chains along the c axis, with Co—O distances in the range 2.104 (4)–2.135 (4) Å. The average Co—N distance is 2.171 Å. A classical O—H⋯N hydrogen bond is formed by the coordinating water molecule and the pyridine solvent molecule. The structure was refined from a racemically twinned crystal with a twin ratio of approximately 8:1.
Related literature
For the structure of a monohydrate of ATPA, see: Beck & Sheldrick (2008). For the Co coordination polymer of 1,3,5-benzenetricarboxylate, see: Livage et al. (2001). For the structure of diaquadiformatodipyridine CoII, see: Zhu et al. (2004). For a reduction of the organic iodine contrast agents in wastewater load, see: Ziegler et al. (1997).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2004); cell SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003).
Supporting information
10.1107/S1600536808032017/si2113sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808032017/si2113Isup2.hkl
0.29 g (1 mmol) Co(NO3)2.6H2O was dissolved in 10 ml ethanol, 0.54 g (1 mmol) 5-amino-2, 4, 6-triiodoisophthalic acid was dissolved in 10 ml pyridine. To mix two solutions gave a pale purple solution which was stirred at room temperature for 2 h, then filtered. After several days well formed light purple single crystals were obtained.
H atoms were positioned geometrically and refined using a riding model with C—H distances = 0.93 Å, N—H distances = 0.86 Å, and O—H distances = 0.85 Å with Uiso(H) = 1.2 times Ueq(C, N, O).
Data collection: APEX2 (Bruker, 2004); cell
SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2003).Fig. 1. The molecular structure of (I), with atom labels and 30% probability displacement ellipsoids for non-H atoms. Atoms labelled with an A belong to the symmetry-related ligand ATPA with symmetry code [A = -x + 3/2, -y, z + 1/2)]. |
[Co(C8H2I3NO4)(C5H5N)3(H2O)]·C5H5N | F(000) = 1812 |
Mr = 950.15 | Dx = 1.974 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 7120 reflections |
a = 9.7759 (2) Å | θ = 4.7–43.0° |
b = 16.9083 (4) Å | µ = 3.48 mm−1 |
c = 19.3380 (4) Å | T = 296 K |
V = 3196.45 (12) Å3 | Sheet, light purple |
Z = 4 | 0.30 × 0.25 × 0.08 mm |
Bruker APEXII CCD diffractometer | 6038 independent reflections |
Radiation source: fine-focus sealed tube | 4577 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.027 |
ϕ and ω scans | θmax = 26.0°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | h = −12→9 |
Tmin = 0.38, Tmax = 0.75 | k = −13→20 |
16692 measured reflections | l = −15→23 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.041 | H-atom parameters constrained |
wR(F2) = 0.065 | w = 1/[σ2(Fo2) + (0.0243P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max = 0.001 |
6038 reflections | Δρmax = 0.68 e Å−3 |
379 parameters | Δρmin = −0.67 e Å−3 |
3 restraints | Absolute structure: Flack (1983), with 2515 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.13 (2) |
[Co(C8H2I3NO4)(C5H5N)3(H2O)]·C5H5N | V = 3196.45 (12) Å3 |
Mr = 950.15 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 9.7759 (2) Å | µ = 3.48 mm−1 |
b = 16.9083 (4) Å | T = 296 K |
c = 19.3380 (4) Å | 0.30 × 0.25 × 0.08 mm |
Bruker APEXII CCD diffractometer | 6038 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | 4577 reflections with I > 2σ(I) |
Tmin = 0.38, Tmax = 0.75 | Rint = 0.027 |
16692 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | H-atom parameters constrained |
wR(F2) = 0.065 | Δρmax = 0.68 e Å−3 |
S = 1.04 | Δρmin = −0.67 e Å−3 |
6038 reflections | Absolute structure: Flack (1983), with 2515 Friedel pairs |
379 parameters | Absolute structure parameter: 0.13 (2) |
3 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.8251 (6) | 0.2139 (3) | 0.8550 (3) | 0.0319 (15) | |
C2 | 0.8423 (6) | 0.2494 (3) | 0.7900 (3) | 0.0344 (16) | |
C3 | 0.7752 (6) | 0.2152 (3) | 0.7335 (3) | 0.0299 (15) | |
C4 | 0.6949 (6) | 0.1483 (3) | 0.7390 (3) | 0.0229 (14) | |
C5 | 0.6819 (6) | 0.1159 (3) | 0.8047 (3) | 0.0286 (15) | |
C6 | 0.7445 (6) | 0.1478 (3) | 0.8629 (3) | 0.0243 (14) | |
C7 | 0.6216 (7) | 0.1144 (3) | 0.6765 (3) | 0.0276 (15) | |
C8 | 0.7222 (7) | 0.1122 (3) | 0.9341 (3) | 0.0305 (15) | |
C9 | 0.9902 (7) | 0.0943 (4) | 1.1534 (4) | 0.052 (2) | |
H9 | 1.0468 | 0.0501 | 1.1540 | 0.063* | |
C10 | 1.0171 (8) | 0.1565 (5) | 1.1968 (4) | 0.067 (2) | |
H10 | 1.0909 | 0.1528 | 1.2270 | 0.080* | |
C11 | 0.9406 (10) | 0.2230 (5) | 1.1973 (4) | 0.078 (3) | |
H11 | 0.9607 | 0.2651 | 1.2266 | 0.093* | |
C12 | 0.8332 (9) | 0.2254 (5) | 1.1531 (4) | 0.078 (3) | |
H12 | 0.7768 | 0.2697 | 1.1520 | 0.093* | |
C13 | 0.8073 (7) | 0.1626 (4) | 1.1100 (4) | 0.060 (2) | |
H13 | 0.7342 | 0.1661 | 1.0793 | 0.072* | |
C14 | 1.1101 (6) | −0.0851 (4) | 1.0269 (3) | 0.0397 (18) | |
H14 | 1.0619 | −0.1279 | 1.0447 | 0.048* | |
C15 | 1.2437 (7) | −0.0963 (4) | 1.0090 (3) | 0.0488 (19) | |
H15 | 1.2859 | −0.1451 | 1.0151 | 0.059* | |
C16 | 1.3142 (7) | −0.0329 (5) | 0.9817 (3) | 0.053 (2) | |
H16 | 1.4044 | −0.0391 | 0.9674 | 0.064* | |
C17 | 1.2528 (6) | 0.0377 (4) | 0.9759 (3) | 0.0471 (19) | |
H17 | 1.3000 | 0.0815 | 0.9592 | 0.057* | |
C18 | 1.1168 (7) | 0.0434 (4) | 0.9955 (3) | 0.0448 (18) | |
H18 | 1.0733 | 0.0921 | 0.9911 | 0.054* | |
C19 | 0.6591 (7) | −0.1424 (4) | 0.9923 (4) | 0.0470 (19) | |
H19 | 0.6114 | −0.1305 | 1.0326 | 0.056* | |
C20 | 0.6061 (7) | −0.1985 (4) | 0.9494 (4) | 0.057 (2) | |
H20 | 0.5249 | −0.2240 | 0.9608 | 0.068* | |
C21 | 0.6717 (9) | −0.2166 (4) | 0.8905 (4) | 0.069 (2) | |
H21 | 0.6357 | −0.2536 | 0.8599 | 0.082* | |
C22 | 0.7916 (9) | −0.1797 (4) | 0.8766 (4) | 0.063 (2) | |
H22 | 0.8416 | −0.1925 | 0.8372 | 0.076* | |
C23 | 0.8384 (7) | −0.1222 (4) | 0.9223 (4) | 0.052 (2) | |
H23 | 0.9188 | −0.0956 | 0.9113 | 0.062* | |
C24 | −0.0436 (7) | 0.0013 (4) | 0.7430 (5) | 0.062 (2) | |
H24 | −0.1309 | −0.0202 | 0.7465 | 0.074* | |
C25 | 0.0132 (9) | 0.0325 (5) | 0.8004 (4) | 0.064 (2) | |
H25 | −0.0337 | 0.0321 | 0.8422 | 0.076* | |
C26 | 0.1384 (11) | 0.0640 (5) | 0.7959 (5) | 0.096 (3) | |
H26 | 0.1804 | 0.0855 | 0.8348 | 0.115* | |
C27 | 0.2020 (9) | 0.0641 (6) | 0.7351 (5) | 0.101 (3) | |
H27 | 0.2884 | 0.0867 | 0.7309 | 0.121* | |
C28 | 0.1404 (9) | 0.0313 (5) | 0.6790 (4) | 0.082 (3) | |
H28 | 0.1862 | 0.0311 | 0.6369 | 0.098* | |
Co1 | 0.83021 (7) | −0.00406 (5) | 1.04654 (4) | 0.0312 (2) | |
I1 | 0.92570 (5) | 0.26385 (3) | 0.94026 (2) | 0.05269 (14) | |
I2 | 0.78262 (5) | 0.27575 (3) | 0.63848 (2) | 0.05874 (16) | |
I3 | 0.56454 (5) | 0.01146 (3) | 0.81795 (2) | 0.05039 (14) | |
N1 | 0.9245 (6) | 0.3143 (3) | 0.7821 (3) | 0.0630 (17) | |
H1A | 0.9357 | 0.3349 | 0.7418 | 0.076* | |
H1B | 0.9649 | 0.3345 | 0.8174 | 0.076* | |
N2 | 0.8833 (5) | 0.0964 (3) | 1.1102 (2) | 0.0393 (14) | |
N3 | 1.0452 (5) | −0.0175 (3) | 1.0205 (2) | 0.0348 (13) | |
N4 | 0.7763 (6) | −0.1033 (3) | 0.9799 (3) | 0.0379 (14) | |
N5 | 0.0172 (7) | −0.0004 (4) | 0.6829 (3) | 0.0660 (19) | |
O1 | 0.6899 (4) | 0.0730 (2) | 0.6366 (2) | 0.0386 (11) | |
O2 | 0.5004 (5) | 0.1311 (3) | 0.6709 (2) | 0.0555 (14) | |
O3 | 0.8147 (4) | 0.0677 (2) | 0.95601 (19) | 0.0329 (10) | |
O4 | 0.6139 (4) | 0.1298 (2) | 0.9646 (2) | 0.0460 (12) | |
O5 | 0.6191 (3) | 0.0161 (2) | 1.05937 (18) | 0.0423 (11) | |
H5B | 0.5951 | 0.0603 | 1.0423 | 0.051* | |
H5A | 0.5963 | 0.0143 | 1.1018 | 0.051* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.041 (4) | 0.029 (4) | 0.026 (4) | 0.003 (3) | −0.003 (3) | −0.007 (3) |
C2 | 0.043 (4) | 0.029 (4) | 0.032 (4) | −0.014 (3) | 0.003 (3) | −0.004 (3) |
C3 | 0.038 (3) | 0.029 (4) | 0.023 (3) | −0.005 (3) | −0.004 (3) | 0.001 (3) |
C4 | 0.026 (4) | 0.022 (3) | 0.020 (3) | 0.004 (3) | −0.001 (3) | −0.007 (3) |
C5 | 0.032 (3) | 0.032 (4) | 0.022 (4) | −0.002 (3) | 0.003 (3) | −0.003 (3) |
C6 | 0.033 (4) | 0.022 (3) | 0.017 (3) | 0.006 (3) | −0.004 (3) | −0.002 (3) |
C7 | 0.041 (4) | 0.020 (4) | 0.021 (4) | 0.010 (3) | 0.005 (3) | 0.004 (3) |
C8 | 0.045 (4) | 0.027 (4) | 0.019 (4) | −0.006 (3) | −0.005 (4) | −0.007 (3) |
C9 | 0.050 (4) | 0.053 (5) | 0.053 (5) | −0.004 (4) | −0.023 (4) | 0.006 (4) |
C10 | 0.078 (6) | 0.071 (6) | 0.052 (5) | −0.045 (5) | −0.022 (5) | −0.004 (5) |
C11 | 0.122 (8) | 0.054 (6) | 0.058 (5) | −0.033 (6) | 0.009 (6) | −0.022 (5) |
C12 | 0.103 (7) | 0.056 (6) | 0.075 (6) | 0.004 (5) | −0.025 (5) | −0.024 (5) |
C13 | 0.067 (5) | 0.054 (5) | 0.059 (5) | 0.011 (5) | −0.006 (5) | −0.020 (4) |
C14 | 0.042 (4) | 0.043 (4) | 0.035 (4) | 0.004 (4) | 0.001 (3) | 0.000 (4) |
C15 | 0.046 (5) | 0.057 (5) | 0.043 (5) | 0.020 (4) | 0.002 (4) | −0.008 (4) |
C16 | 0.028 (4) | 0.088 (6) | 0.044 (5) | 0.013 (4) | 0.003 (3) | −0.009 (4) |
C17 | 0.032 (4) | 0.064 (6) | 0.045 (4) | −0.008 (4) | −0.001 (3) | 0.010 (4) |
C18 | 0.046 (5) | 0.041 (4) | 0.048 (5) | 0.001 (4) | 0.003 (4) | 0.004 (4) |
C19 | 0.048 (5) | 0.037 (4) | 0.056 (5) | 0.005 (4) | 0.003 (4) | 0.004 (4) |
C20 | 0.047 (5) | 0.043 (5) | 0.080 (6) | −0.017 (4) | −0.010 (4) | 0.001 (5) |
C21 | 0.088 (7) | 0.050 (5) | 0.068 (5) | −0.009 (5) | −0.026 (5) | −0.008 (5) |
C22 | 0.085 (6) | 0.060 (6) | 0.046 (5) | 0.000 (5) | −0.004 (5) | −0.028 (4) |
C23 | 0.055 (5) | 0.051 (5) | 0.049 (5) | −0.011 (4) | 0.006 (4) | −0.005 (4) |
C24 | 0.041 (5) | 0.061 (5) | 0.083 (6) | 0.005 (4) | 0.005 (5) | −0.002 (6) |
C25 | 0.078 (6) | 0.067 (6) | 0.046 (5) | 0.019 (5) | 0.010 (5) | 0.001 (5) |
C26 | 0.115 (9) | 0.122 (8) | 0.050 (6) | −0.044 (7) | −0.034 (6) | 0.010 (6) |
C27 | 0.059 (6) | 0.167 (10) | 0.078 (7) | −0.047 (6) | −0.011 (6) | 0.020 (8) |
C28 | 0.063 (6) | 0.131 (9) | 0.051 (6) | −0.003 (6) | 0.014 (5) | 0.023 (6) |
Co1 | 0.0333 (4) | 0.0350 (5) | 0.0254 (5) | −0.0001 (4) | −0.0013 (4) | 0.0022 (5) |
I1 | 0.0737 (3) | 0.0481 (3) | 0.0363 (3) | −0.0171 (3) | −0.0127 (3) | −0.0058 (2) |
I2 | 0.0883 (4) | 0.0569 (3) | 0.0311 (3) | −0.0191 (3) | 0.0001 (3) | 0.0134 (3) |
I3 | 0.0633 (3) | 0.0495 (3) | 0.0384 (3) | −0.0231 (3) | −0.0053 (2) | 0.0067 (2) |
N1 | 0.092 (4) | 0.062 (4) | 0.035 (3) | −0.045 (4) | −0.014 (4) | 0.007 (3) |
N2 | 0.048 (4) | 0.042 (4) | 0.027 (3) | −0.004 (3) | 0.000 (3) | −0.001 (3) |
N3 | 0.031 (3) | 0.038 (3) | 0.035 (3) | 0.002 (3) | 0.003 (2) | 0.006 (3) |
N4 | 0.043 (3) | 0.039 (4) | 0.031 (3) | 0.003 (3) | 0.002 (3) | −0.002 (3) |
N5 | 0.063 (4) | 0.089 (5) | 0.047 (4) | 0.014 (4) | −0.012 (4) | −0.011 (4) |
O1 | 0.047 (3) | 0.041 (3) | 0.028 (2) | −0.001 (2) | 0.002 (2) | −0.013 (2) |
O2 | 0.048 (3) | 0.075 (4) | 0.044 (3) | 0.015 (3) | −0.012 (3) | −0.020 (3) |
O3 | 0.037 (3) | 0.036 (3) | 0.026 (2) | 0.001 (2) | −0.005 (2) | 0.007 (2) |
O4 | 0.049 (3) | 0.064 (3) | 0.025 (3) | 0.021 (2) | 0.010 (2) | 0.001 (2) |
O5 | 0.045 (3) | 0.048 (3) | 0.034 (2) | 0.007 (2) | 0.006 (2) | 0.010 (2) |
C1—C6 | 1.376 (7) | C18—N3 | 1.336 (7) |
C1—C2 | 1.404 (7) | C18—H18 | 0.9300 |
C1—I1 | 2.097 (6) | C19—N4 | 1.344 (7) |
C2—N1 | 1.368 (7) | C19—C20 | 1.363 (9) |
C2—C3 | 1.400 (7) | C19—H19 | 0.9300 |
C3—C4 | 1.381 (7) | C20—C21 | 1.342 (9) |
C3—I2 | 2.105 (5) | C20—H20 | 0.9300 |
C4—C5 | 1.389 (7) | C21—C22 | 1.355 (9) |
C4—C7 | 1.517 (8) | C21—H21 | 0.9300 |
C5—C6 | 1.390 (7) | C22—C23 | 1.391 (8) |
C5—I3 | 2.122 (6) | C22—H22 | 0.9300 |
C6—C8 | 1.519 (4) | C23—N4 | 1.309 (7) |
C7—O2 | 1.223 (6) | C23—H23 | 0.9300 |
C7—O1 | 1.238 (6) | C24—N5 | 1.306 (8) |
C8—O4 | 1.248 (6) | C24—C25 | 1.348 (9) |
C8—O3 | 1.250 (6) | C24—H24 | 0.9300 |
C9—N2 | 1.337 (7) | C25—C26 | 1.338 (10) |
C9—C10 | 1.372 (9) | C25—H25 | 0.9300 |
C9—H9 | 0.9300 | C26—C27 | 1.331 (11) |
C10—C11 | 1.350 (10) | C26—H26 | 0.9300 |
C10—H10 | 0.9300 | C27—C28 | 1.359 (11) |
C11—C12 | 1.355 (10) | C27—H27 | 0.9300 |
C11—H11 | 0.9300 | C28—N5 | 1.321 (9) |
C12—C13 | 1.373 (9) | C28—H28 | 0.9300 |
C12—H12 | 0.9300 | Co1—O1i | 2.104 (4) |
C13—N2 | 1.345 (7) | Co1—O5 | 2.106 (3) |
C13—H13 | 0.9300 | Co1—O3 | 2.135 (4) |
C14—N3 | 1.312 (7) | Co1—N2 | 2.161 (5) |
C14—C15 | 1.365 (8) | Co1—N3 | 2.173 (5) |
C14—H14 | 0.9300 | Co1—N4 | 2.180 (5) |
C15—C16 | 1.379 (9) | N1—H1A | 0.8600 |
C15—H15 | 0.9300 | N1—H1B | 0.8600 |
C16—C17 | 1.342 (8) | O1—Co1ii | 2.104 (4) |
C16—H16 | 0.9300 | O5—H5B | 0.8500 |
C17—C18 | 1.386 (8) | O5—H5A | 0.8499 |
C17—H17 | 0.9300 | ||
C6—C1—C2 | 121.0 (5) | C19—C20—H20 | 120.2 |
C6—C1—I1 | 120.6 (4) | C20—C21—C22 | 118.4 (8) |
C2—C1—I1 | 118.4 (4) | C20—C21—H21 | 120.8 |
N1—C2—C3 | 121.3 (5) | C22—C21—H21 | 120.8 |
N1—C2—C1 | 120.9 (5) | C21—C22—C23 | 118.7 (8) |
C3—C2—C1 | 117.8 (5) | C21—C22—H22 | 120.6 |
C4—C3—C2 | 123.0 (5) | C23—C22—H22 | 120.6 |
C4—C3—I2 | 119.1 (4) | N4—C23—C22 | 124.0 (7) |
C2—C3—I2 | 117.7 (4) | N4—C23—H23 | 118.0 |
C3—C4—C5 | 116.5 (5) | C22—C23—H23 | 118.0 |
C3—C4—C7 | 121.1 (5) | N5—C24—C25 | 123.6 (7) |
C5—C4—C7 | 122.5 (5) | N5—C24—H24 | 118.2 |
C4—C5—C6 | 123.2 (5) | C25—C24—H24 | 118.2 |
C4—C5—I3 | 119.2 (4) | C26—C25—C24 | 118.6 (8) |
C6—C5—I3 | 117.6 (4) | C26—C25—H25 | 120.7 |
C1—C6—C5 | 118.5 (5) | C24—C25—H25 | 120.7 |
C1—C6—C8 | 120.3 (5) | C27—C26—C25 | 119.0 (9) |
C5—C6—C8 | 121.1 (5) | C27—C26—H26 | 120.5 |
O2—C7—O1 | 126.7 (7) | C25—C26—H26 | 120.5 |
O2—C7—C4 | 116.2 (6) | C26—C27—C28 | 119.9 (8) |
O1—C7—C4 | 117.2 (5) | C26—C27—H27 | 120.1 |
O4—C8—O3 | 126.7 (5) | C28—C27—H27 | 120.1 |
O4—C8—C6 | 117.0 (6) | N5—C28—C27 | 121.6 (8) |
O3—C8—C6 | 116.2 (5) | N5—C28—H28 | 119.2 |
N2—C9—C10 | 120.7 (7) | C27—C28—H28 | 119.2 |
N2—C9—H9 | 119.6 | O1i—Co1—O5 | 84.29 (15) |
C10—C9—H9 | 119.6 | O1i—Co1—O3 | 170.52 (16) |
C11—C10—C9 | 122.5 (8) | O5—Co1—O3 | 86.29 (15) |
C11—C10—H10 | 118.7 | O1i—Co1—N2 | 89.21 (16) |
C9—C10—H10 | 118.7 | O5—Co1—N2 | 92.37 (17) |
C10—C11—C12 | 116.7 (8) | O3—Co1—N2 | 92.18 (17) |
C10—C11—H11 | 121.7 | O1i—Co1—N3 | 102.93 (17) |
C12—C11—H11 | 121.7 | O5—Co1—N3 | 172.68 (17) |
C11—C12—C13 | 120.2 (8) | O3—Co1—N3 | 86.47 (17) |
C11—C12—H12 | 119.9 | N2—Co1—N3 | 88.95 (19) |
C13—C12—H12 | 119.9 | O1i—Co1—N4 | 92.29 (17) |
N2—C13—C12 | 122.7 (7) | O5—Co1—N4 | 87.53 (18) |
N2—C13—H13 | 118.7 | O3—Co1—N4 | 86.31 (16) |
C12—C13—H13 | 118.7 | N2—Co1—N4 | 178.48 (19) |
N3—C14—C15 | 124.1 (6) | N3—Co1—N4 | 91.0 (2) |
N3—C14—H14 | 118.0 | C2—N1—H1A | 120.0 |
C15—C14—H14 | 118.0 | C2—N1—H1B | 120.0 |
C14—C15—C16 | 117.8 (7) | H1A—N1—H1B | 120.0 |
C14—C15—H15 | 121.1 | C9—N2—C13 | 117.2 (6) |
C16—C15—H15 | 121.1 | C9—N2—Co1 | 121.5 (5) |
C17—C16—C15 | 120.0 (6) | C13—N2—Co1 | 121.3 (5) |
C17—C16—H16 | 120.0 | C14—N3—C18 | 116.9 (5) |
C15—C16—H16 | 120.0 | C14—N3—Co1 | 122.5 (4) |
C16—C17—C18 | 117.9 (7) | C18—N3—Co1 | 120.7 (4) |
C16—C17—H17 | 121.0 | C23—N4—C19 | 115.3 (6) |
C18—C17—H17 | 121.0 | C23—N4—Co1 | 125.4 (5) |
N3—C18—C17 | 123.2 (6) | C19—N4—Co1 | 118.7 (5) |
N3—C18—H18 | 118.4 | C24—N5—C28 | 117.2 (7) |
C17—C18—H18 | 118.4 | C7—O1—Co1ii | 141.2 (4) |
N4—C19—C20 | 123.9 (7) | C8—O3—Co1 | 132.1 (4) |
N4—C19—H19 | 118.0 | Co1—O5—H5B | 111.5 |
C20—C19—H19 | 118.0 | Co1—O5—H5A | 111.4 |
C21—C20—C19 | 119.6 (7) | H5B—O5—H5A | 109.4 |
C21—C20—H20 | 120.2 |
Symmetry codes: (i) −x+3/2, −y, z+1/2; (ii) −x+3/2, −y, z−1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5A···N5iii | 0.85 | 1.94 | 2.748 (7) | 159 |
Symmetry code: (iii) −x+1/2, −y, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [Co(C8H2I3NO4)(C5H5N)3(H2O)]·C5H5N |
Mr | 950.15 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 296 |
a, b, c (Å) | 9.7759 (2), 16.9083 (4), 19.3380 (4) |
V (Å3) | 3196.45 (12) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 3.48 |
Crystal size (mm) | 0.30 × 0.25 × 0.08 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2000) |
Tmin, Tmax | 0.38, 0.75 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16692, 6038, 4577 |
Rint | 0.027 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.065, 1.04 |
No. of reflections | 6038 |
No. of parameters | 379 |
No. of restraints | 3 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.68, −0.67 |
Absolute structure | Flack (1983), with 2515 Friedel pairs |
Absolute structure parameter | 0.13 (2) |
Computer programs: APEX2 (Bruker, 2004), SAINT (Bruker, 2004), SHELXS97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2003).
Co1—O1i | 2.104 (4) | Co1—N2 | 2.161 (5) |
Co1—O5 | 2.106 (3) | Co1—N3 | 2.173 (5) |
Co1—O3 | 2.135 (4) | Co1—N4 | 2.180 (5) |
O1i—Co1—O3 | 170.52 (16) | O5—Co1—N3 | 172.68 (17) |
O1i—Co1—N3 | 102.93 (17) | N2—Co1—N4 | 178.48 (19) |
Symmetry code: (i) −x+3/2, −y, z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5A···N5ii | 0.85 | 1.94 | 2.748 (7) | 159 |
Symmetry code: (ii) −x+1/2, −y, z+1/2. |
Acknowledgements
This work was financially supported by the Natural Science Foundation of Jiangsu Province Education Office (grant No. 04KJB150015). We also thank Dr Zaichao Zhang for his support.
References
Beck, T. & Sheldrick, G. M. (2008). Acta Cryst. E64, o1286. Web of Science CSD CrossRef IUCr Journals Google Scholar
Bruker (2000). SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Bruker (2004). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
Livage, C., Guillou, N., Marrot, J. & Férey, G. (2001). Chem. Mater. 13, 4387–4392. Web of Science CSD CrossRef CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2003). J. Appl. Cryst. 36, 7–13. Web of Science CrossRef CAS IUCr Journals Google Scholar
Zhu, Z.-B., Gao, S., Liu, J.-W., Huo, L.-H. & Zhao, H. (2004). Acta Cryst. E60, m808–m810. Web of Science CSD CrossRef IUCr Journals Google Scholar
Ziegler, M., Schulze-Karal, C., Steiof, M. & Rüden, H. (1997). Korresp. Abwasser, 44, 1404–1408. CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The crystal structure of ATPA (Beck & Sheldrick, 2008) is the precursor of the synthesis of a wide range of contrast agents with different amide-bound aliphatic side chains, which modulate their physical and physiological properties (Ziegler et al. 1997). However, to the best of our knowledge, there is no information about the structural characterization of its transition metal complexes.
The molecular structure of the title complex comprises of polymeric chains which extend along the c-axis. In the chain, each Co atom shows a distorted octahedron environment with a [3N+3O] coordination: three nitrogen atoms originate from pyridines, one oxygen from a water molecule and two oxygen atoms from two ATPA ligands. The two CO2- groups of the ATPA ligand coordinate to Co2+, bridging the Co metal centers. The bond lengths of the distorted octahedron are presented in Table 1. The average Co—N bond distance of the three pyridine ligands is 2.171 Å. The Co—O bond lengths in the title complex are slightly longer than those in the reported coordination polymers of cobalt and 1,3,5-benzenetricarboxylate (2.055 (2) Å) (Livage et al., 2001). The bond angles shown in Table 1 demonstrate the distorted octahedron in the Co coordination center. Compared with the data of the free ligand ATPA (Beck & Sheldrick, 2008), the C—O bond lengths are lengthened, the C—I and C—N bond distances are almost unchanged and the O—C—O bond angles are slightly expanded when the carboxylate groups are coordinated to central cations. The Co—N(py) and Co—O(H2O) distances are in good agreement with those in diaqua-diformato-dipyridine-cobalt(II) (Zhu et al., 2004), where they are equal to 2.159 (4) Å and 2.143 (3) Å, respectively. A classic O—H···N hydrogen bond is formed by the coordinating water and the uncoordinated pyridine molecule (Table 2).