organic compounds
2-(4-Bromophenoxy)-3-isopropyl-5,6,7,8-tetrahydro-1-benzothieno[2,3-d]pyrimidin-4(3H)-one
aDepartment of Medicinal Chemistry, Yunyang Medical College, Shiyan 442000, People's Republic of China
*Correspondence e-mail: zengken@126.com
In the title compound, C19H19BrN2O2S, the central thienopyrimidine ring system is essentially planar, with a maximum displacement of 0.068 (3) Å. The attached cyclohexene ring adopts a half-chair conformation. The and crystal packing are stabilized by three intramolecular C—H⋯O hydrogen bonds and two C—H⋯π interactions.
Related literature
For background to the use of pyrimidine derivatives as drugs, see: Ding et al. (2004). For a description of the Cambridge Structural Database, see: Allen (2002). For a related structure, see: Zeng et al. (2006).
Experimental
Crystal data
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Data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
Supporting information
10.1107/S160053680803732X/at2674sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053680803732X/at2674Isup2.hkl
To a solution of iminophosphorane (1.45 g, 3 mmol) in anhydrous dichloromethane (15 ml) was added iso-propyl isocyanate (3 mmol) under dry nitrogen at room temperature. After the reaction mixture was left unstirred for 48 h at room temperature, the solvent was removed off under reduced pressure and ether/petroleum ether (1:2 v/v, 20 ml) was added to precipitate triphenylphosphine oxide. After filtration, the solvent was removed, and the residue was dissolved in CH3CN (15 ml). After adding 4-Br-PhOH (3.1 mmol) and excess K2CO3 to the solution of carbodiimide, The mixture was stirred for 24 h at room temperature, the solution was condensed and the residue was recrystallized by EtOH to give the title compound, (I), in yield of 80% (m.p. 478 K). Elemental analysis calculated for C19H19BrN2O2S: C 54.42, H 4.57, N 6.68. Found: C 54.56, H 4.42, N 6.53. Crystals suitable for single crystal X-ray diffraction were obtained by vapor diffusion of hexane and dichloromethane (1:3 v/v) at room temperature.
H atoms were placed at calculated positions and treated as riding atoms, with C—H = 0.93–0.98 Å, and Uiso(H) = 1.2Ueq(C) for CH or 1.5Ueq(C) for CH3.
Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1990); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXTL (Sheldrick, 1997).Fig. 1. View of the molecule of (I) showing the atom-labeling scheme. Displacement ellipsoids are drawn at 50% probability level. H-atoms are represented by circles of arbitrary size. |
C19H19BrN2O2S | F(000) = 428 |
Mr = 419.33 | Dx = 1.499 Mg m−3 |
Monoclinic, P21 | Melting point: 478K K |
Hall symbol: P 2yb | Mo Kα radiation, λ = 0.71073 Å |
a = 13.3957 (7) Å | Cell parameters from 2048 reflections |
b = 5.7366 (3) Å | θ = 2.9–24.5° |
c = 13.3956 (7) Å | µ = 2.34 mm−1 |
β = 115.541 (1)° | T = 298 K |
V = 928.81 (8) Å3 | Block, colorless |
Z = 2 | 0.20 × 0.10 × 0.10 mm |
Bruker SMART CCD area-detector diffractometer | 3228 independent reflections |
Radiation source: fine-focus sealed tube | 2346 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.106 |
ϕ and ω scans | θmax = 25.0°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −13→15 |
Tmin = 0.652, Tmax = 0.800 | k = −6→6 |
5798 measured reflections | l = −15→15 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.067 | H-atom parameters constrained |
wR(F2) = 0.204 | w = 1/[σ2(Fo2) + (0.1151P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max = 0.001 |
3228 reflections | Δρmax = 0.67 e Å−3 |
228 parameters | Δρmin = −0.63 e Å−3 |
1 restraint | Absolute structure: Flack (1983), 1424 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.00 (8) |
C19H19BrN2O2S | V = 928.81 (8) Å3 |
Mr = 419.33 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 13.3957 (7) Å | µ = 2.34 mm−1 |
b = 5.7366 (3) Å | T = 298 K |
c = 13.3956 (7) Å | 0.20 × 0.10 × 0.10 mm |
β = 115.541 (1)° |
Bruker SMART CCD area-detector diffractometer | 3228 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2346 reflections with I > 2σ(I) |
Tmin = 0.652, Tmax = 0.800 | Rint = 0.106 |
5798 measured reflections |
R[F2 > 2σ(F2)] = 0.067 | H-atom parameters constrained |
wR(F2) = 0.204 | Δρmax = 0.67 e Å−3 |
S = 1.07 | Δρmin = −0.63 e Å−3 |
3228 reflections | Absolute structure: Flack (1983), 1424 Friedel pairs |
228 parameters | Absolute structure parameter: 0.00 (8) |
1 restraint |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Br1 | 0.84533 (6) | 0.7555 (2) | 0.71718 (7) | 0.0762 (4) | |
C1 | 0.0942 (6) | 1.2447 (18) | 0.8813 (6) | 0.0534 (18) | |
H1A | 0.0444 | 1.3157 | 0.8118 | 0.064* | |
H1B | 0.0650 | 1.0921 | 0.8853 | 0.064* | |
C2 | 0.0967 (9) | 1.390 (3) | 0.9738 (10) | 0.103 (5) | |
H2A | 0.0231 | 1.4514 | 0.9536 | 0.124* | |
H2B | 0.1152 | 1.2908 | 1.0380 | 0.124* | |
C3 | 0.1719 (9) | 1.578 (2) | 1.0038 (11) | 0.093 (4) | |
H3A | 0.1730 | 1.6464 | 1.0704 | 0.111* | |
H3B | 0.1416 | 1.6942 | 0.9459 | 0.111* | |
C4 | 0.2917 (7) | 1.537 (2) | 1.0246 (7) | 0.067 (3) | |
H4A | 0.3234 | 1.6797 | 1.0119 | 0.081* | |
H4B | 0.3351 | 1.4885 | 1.1006 | 0.081* | |
C5 | 0.2930 (6) | 1.3513 (13) | 0.9472 (6) | 0.0460 (19) | |
C6 | 0.2071 (5) | 1.2157 (15) | 0.8824 (5) | 0.046 (2) | |
C7 | 0.2363 (6) | 1.0548 (14) | 0.8163 (6) | 0.0405 (16) | |
C8 | 0.3446 (6) | 1.0816 (16) | 0.8335 (6) | 0.052 (2) | |
C9 | 0.1666 (6) | 0.9073 (15) | 0.7312 (6) | 0.0457 (18) | |
C10 | 0.3302 (6) | 0.8295 (14) | 0.7015 (6) | 0.047 (2) | |
C11 | 0.1472 (6) | 0.6545 (14) | 0.5719 (6) | 0.0459 (18) | |
H11 | 0.0726 | 0.6617 | 0.5683 | 0.055* | |
C12 | 0.1754 (9) | 0.3997 (19) | 0.5775 (8) | 0.079 (3) | |
H12A | 0.1906 | 0.3406 | 0.6497 | 0.119* | |
H12B | 0.2395 | 0.3796 | 0.5638 | 0.119* | |
H12C | 0.1142 | 0.3161 | 0.5228 | 0.119* | |
C13 | 0.1386 (8) | 0.767 (2) | 0.4657 (6) | 0.071 (2) | |
H13A | 0.2104 | 0.7707 | 0.4661 | 0.107* | |
H13B | 0.1112 | 0.9233 | 0.4608 | 0.107* | |
H13C | 0.0889 | 0.6784 | 0.4033 | 0.107* | |
C14 | 0.4794 (6) | 0.7242 (18) | 0.6612 (7) | 0.055 (2) | |
C15 | 0.5512 (8) | 0.553 (2) | 0.7233 (8) | 0.073 (3) | |
H15 | 0.5268 | 0.4320 | 0.7536 | 0.087* | |
C16 | 0.6596 (8) | 0.563 (2) | 0.7394 (9) | 0.074 (3) | |
H16 | 0.7096 | 0.4498 | 0.7815 | 0.088* | |
C17 | 0.6938 (5) | 0.741 (2) | 0.6934 (6) | 0.061 (2) | |
C18 | 0.6221 (7) | 0.9049 (19) | 0.6317 (8) | 0.066 (2) | |
H18 | 0.6458 | 1.0245 | 0.6002 | 0.079* | |
C19 | 0.5134 (8) | 0.895 (2) | 0.6152 (9) | 0.073 (3) | |
H19 | 0.4634 | 1.0073 | 0.5720 | 0.088* | |
N1 | 0.3955 (5) | 0.9634 (13) | 0.7793 (6) | 0.0527 (17) | |
N2 | 0.2193 (4) | 0.7931 (13) | 0.6717 (4) | 0.0415 (13) | |
O1 | 0.0683 (4) | 0.8637 (12) | 0.7061 (5) | 0.0664 (19) | |
O2 | 0.3666 (4) | 0.7053 (13) | 0.6384 (5) | 0.072 (2) | |
S1 | 0.41333 (15) | 1.2916 (5) | 0.93045 (17) | 0.0604 (6) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0420 (4) | 0.1275 (10) | 0.0622 (5) | −0.0010 (6) | 0.0253 (4) | −0.0105 (6) |
C1 | 0.048 (4) | 0.055 (5) | 0.061 (4) | −0.001 (5) | 0.027 (3) | 0.001 (5) |
C2 | 0.063 (6) | 0.162 (13) | 0.089 (8) | −0.006 (7) | 0.037 (6) | −0.052 (8) |
C3 | 0.079 (7) | 0.105 (10) | 0.106 (9) | −0.008 (7) | 0.051 (7) | −0.036 (8) |
C4 | 0.059 (5) | 0.090 (7) | 0.043 (4) | 0.009 (5) | 0.013 (4) | −0.009 (5) |
C5 | 0.045 (4) | 0.050 (5) | 0.038 (4) | 0.004 (3) | 0.014 (3) | 0.001 (3) |
C6 | 0.039 (4) | 0.057 (6) | 0.036 (3) | 0.007 (4) | 0.011 (3) | 0.004 (4) |
C7 | 0.032 (3) | 0.052 (4) | 0.033 (3) | 0.007 (3) | 0.010 (3) | 0.002 (3) |
C8 | 0.033 (4) | 0.070 (6) | 0.043 (4) | −0.004 (4) | 0.006 (3) | −0.002 (4) |
C9 | 0.037 (4) | 0.055 (5) | 0.040 (4) | −0.004 (4) | 0.012 (3) | 0.006 (3) |
C10 | 0.038 (4) | 0.053 (5) | 0.049 (4) | 0.004 (3) | 0.018 (3) | −0.006 (3) |
C11 | 0.037 (4) | 0.053 (5) | 0.044 (4) | −0.009 (3) | 0.013 (3) | −0.004 (3) |
C12 | 0.100 (8) | 0.058 (6) | 0.061 (6) | −0.002 (6) | 0.016 (6) | 0.001 (5) |
C13 | 0.083 (6) | 0.069 (6) | 0.044 (4) | 0.001 (6) | 0.011 (4) | 0.007 (5) |
C14 | 0.039 (4) | 0.068 (6) | 0.061 (4) | −0.009 (4) | 0.024 (3) | −0.022 (5) |
C15 | 0.054 (5) | 0.088 (8) | 0.076 (7) | −0.002 (5) | 0.028 (5) | 0.010 (6) |
C16 | 0.050 (5) | 0.093 (8) | 0.076 (6) | 0.004 (5) | 0.027 (5) | 0.019 (6) |
C17 | 0.034 (3) | 0.106 (7) | 0.043 (4) | 0.005 (6) | 0.016 (3) | −0.019 (6) |
C18 | 0.049 (5) | 0.072 (6) | 0.074 (6) | 0.000 (5) | 0.023 (5) | 0.016 (5) |
C19 | 0.048 (5) | 0.077 (7) | 0.084 (7) | 0.011 (5) | 0.019 (5) | 0.009 (5) |
N1 | 0.034 (3) | 0.063 (5) | 0.057 (4) | −0.007 (3) | 0.016 (3) | −0.022 (4) |
N2 | 0.031 (3) | 0.049 (4) | 0.043 (3) | −0.005 (3) | 0.013 (2) | 0.002 (3) |
O1 | 0.033 (3) | 0.103 (6) | 0.062 (3) | −0.012 (3) | 0.018 (2) | −0.019 (3) |
O2 | 0.039 (3) | 0.098 (6) | 0.079 (4) | −0.011 (3) | 0.025 (3) | −0.041 (4) |
S1 | 0.0373 (9) | 0.0736 (16) | 0.0600 (11) | −0.0053 (11) | 0.0114 (8) | −0.0194 (12) |
Br1—C17 | 1.916 (7) | C10—O2 | 1.347 (9) |
C1—C2 | 1.481 (14) | C10—N2 | 1.378 (8) |
C1—C6 | 1.515 (9) | C11—N2 | 1.497 (9) |
C1—H1A | 0.9700 | C11—C12 | 1.504 (14) |
C1—H1B | 0.9700 | C11—C13 | 1.521 (12) |
C2—C3 | 1.410 (18) | C11—H11 | 0.9800 |
C2—H2A | 0.9700 | C12—H12A | 0.9600 |
C2—H2B | 0.9700 | C12—H12B | 0.9600 |
C3—C4 | 1.523 (14) | C12—H12C | 0.9600 |
C3—H3A | 0.9700 | C13—H13A | 0.9600 |
C3—H3B | 0.9700 | C13—H13B | 0.9600 |
C4—C5 | 1.492 (12) | C13—H13C | 0.9600 |
C4—H4A | 0.9700 | C14—C19 | 1.336 (15) |
C4—H4B | 0.9700 | C14—C15 | 1.377 (15) |
C5—C6 | 1.350 (11) | C14—O2 | 1.412 (9) |
C5—S1 | 1.754 (8) | C15—C16 | 1.374 (13) |
C6—C7 | 1.445 (10) | C15—H15 | 0.9300 |
C7—C8 | 1.375 (10) | C16—C17 | 1.370 (15) |
C7—C9 | 1.404 (11) | C16—H16 | 0.9300 |
C8—N1 | 1.370 (10) | C17—C18 | 1.342 (14) |
C8—S1 | 1.719 (9) | C18—C19 | 1.377 (12) |
C9—O1 | 1.236 (9) | C18—H18 | 0.9300 |
C9—N2 | 1.431 (10) | C19—H19 | 0.9300 |
C10—N1 | 1.287 (10) | ||
C2—C1—C6 | 113.0 (7) | N2—C11—C12 | 114.8 (7) |
C2—C1—H1A | 109.0 | N2—C11—C13 | 111.6 (7) |
C6—C1—H1A | 109.0 | C12—C11—C13 | 112.1 (8) |
C2—C1—H1B | 109.0 | N2—C11—H11 | 105.8 |
C6—C1—H1B | 109.0 | C12—C11—H11 | 105.8 |
H1A—C1—H1B | 107.8 | C13—C11—H11 | 105.8 |
C3—C2—C1 | 115.1 (10) | C11—C12—H12A | 109.5 |
C3—C2—H2A | 108.5 | C11—C12—H12B | 109.5 |
C1—C2—H2A | 108.5 | H12A—C12—H12B | 109.5 |
C3—C2—H2B | 108.5 | C11—C12—H12C | 109.5 |
C1—C2—H2B | 108.5 | H12A—C12—H12C | 109.5 |
H2A—C2—H2B | 107.5 | H12B—C12—H12C | 109.5 |
C2—C3—C4 | 120.1 (11) | C11—C13—H13A | 109.5 |
C2—C3—H3A | 107.3 | C11—C13—H13B | 109.5 |
C4—C3—H3A | 107.3 | H13A—C13—H13B | 109.5 |
C2—C3—H3B | 107.3 | C11—C13—H13C | 109.5 |
C4—C3—H3B | 107.3 | H13A—C13—H13C | 109.5 |
H3A—C3—H3B | 106.9 | H13B—C13—H13C | 109.5 |
C5—C4—C3 | 108.0 (8) | C19—C14—C15 | 121.0 (8) |
C5—C4—H4A | 110.1 | C19—C14—O2 | 120.1 (9) |
C3—C4—H4A | 110.1 | C15—C14—O2 | 118.6 (9) |
C5—C4—H4B | 110.1 | C16—C15—C14 | 118.6 (10) |
C3—C4—H4B | 110.1 | C16—C15—H15 | 120.7 |
H4A—C4—H4B | 108.4 | C14—C15—H15 | 120.7 |
C6—C5—C4 | 126.6 (7) | C17—C16—C15 | 119.9 (10) |
C6—C5—S1 | 112.4 (5) | C17—C16—H16 | 120.1 |
C4—C5—S1 | 121.0 (6) | C15—C16—H16 | 120.1 |
C5—C6—C7 | 112.3 (6) | C18—C17—C16 | 120.6 (7) |
C5—C6—C1 | 120.9 (7) | C18—C17—Br1 | 119.9 (8) |
C7—C6—C1 | 126.7 (7) | C16—C17—Br1 | 119.5 (8) |
C8—C7—C9 | 119.2 (7) | C17—C18—C19 | 119.7 (10) |
C8—C7—C6 | 111.8 (7) | C17—C18—H18 | 120.1 |
C9—C7—C6 | 128.4 (6) | C19—C18—H18 | 120.1 |
N1—C8—C7 | 125.8 (7) | C14—C19—C18 | 120.2 (9) |
N1—C8—S1 | 121.3 (5) | C14—C19—H19 | 119.9 |
C7—C8—S1 | 112.8 (6) | C18—C19—H19 | 119.9 |
O1—C9—C7 | 126.9 (7) | C10—N1—C8 | 113.9 (6) |
O1—C9—N2 | 118.7 (7) | C10—N2—C9 | 119.9 (6) |
C7—C9—N2 | 114.4 (6) | C10—N2—C11 | 122.7 (6) |
N1—C10—O2 | 121.4 (6) | C9—N2—C11 | 117.2 (5) |
N1—C10—N2 | 126.6 (7) | C10—O2—C14 | 117.8 (6) |
O2—C10—N2 | 112.0 (6) | C8—S1—C5 | 90.6 (4) |
C6—C1—C2—C3 | 36.3 (16) | Br1—C17—C18—C19 | −179.7 (8) |
C1—C2—C3—C4 | −50.1 (18) | C15—C14—C19—C18 | −1.6 (16) |
C2—C3—C4—C5 | 34.6 (16) | O2—C14—C19—C18 | −175.9 (9) |
C3—C4—C5—C6 | −9.8 (13) | C17—C18—C19—C14 | 0.5 (16) |
C3—C4—C5—S1 | 169.1 (8) | O2—C10—N1—C8 | 178.4 (7) |
C4—C5—C6—C7 | 179.3 (8) | N2—C10—N1—C8 | −1.7 (13) |
S1—C5—C6—C7 | 0.4 (8) | C7—C8—N1—C10 | 4.8 (13) |
C4—C5—C6—C1 | 1.0 (12) | S1—C8—N1—C10 | −173.3 (6) |
S1—C5—C6—C1 | −177.9 (6) | N1—C10—N2—C9 | −1.2 (12) |
C2—C1—C6—C5 | −13.3 (13) | O2—C10—N2—C9 | 178.8 (7) |
C2—C1—C6—C7 | 168.6 (10) | N1—C10—N2—C11 | 173.0 (8) |
C5—C6—C7—C8 | −1.3 (10) | O2—C10—N2—C11 | −7.0 (10) |
C1—C6—C7—C8 | 176.9 (7) | O1—C9—N2—C10 | −176.8 (7) |
C5—C6—C7—C9 | −172.1 (8) | C7—C9—N2—C10 | 1.2 (10) |
C1—C6—C7—C9 | 6.1 (13) | O1—C9—N2—C11 | 8.7 (10) |
C9—C7—C8—N1 | −4.8 (13) | C7—C9—N2—C11 | −173.3 (7) |
C6—C7—C8—N1 | −176.6 (8) | C12—C11—N2—C10 | 66.0 (10) |
C9—C7—C8—S1 | 173.4 (6) | C13—C11—N2—C10 | −63.0 (10) |
C6—C7—C8—S1 | 1.6 (9) | C12—C11—N2—C9 | −119.6 (9) |
C8—C7—C9—O1 | 179.4 (8) | C13—C11—N2—C9 | 111.4 (8) |
C6—C7—C9—O1 | −10.4 (14) | N1—C10—O2—C14 | 0.8 (13) |
C8—C7—C9—N2 | 1.5 (11) | N2—C10—O2—C14 | −179.2 (7) |
C6—C7—C9—N2 | 171.7 (7) | C19—C14—O2—C10 | −86.5 (11) |
C19—C14—C15—C16 | 1.5 (15) | C15—C14—O2—C10 | 99.1 (10) |
O2—C14—C15—C16 | 175.9 (9) | N1—C8—S1—C5 | 177.1 (8) |
C14—C15—C16—C17 | −0.4 (16) | C7—C8—S1—C5 | −1.2 (7) |
C15—C16—C17—C18 | −0.6 (16) | C6—C5—S1—C8 | 0.4 (6) |
C15—C16—C17—Br1 | 179.7 (8) | C4—C5—S1—C8 | −178.6 (7) |
C16—C17—C18—C19 | 0.6 (15) |
D—H···A | D—H | H···A | D···A | D—H···A |
C11—H11···O1 | 0.98 | 2.20 | 2.726 (10) | 112 |
C12—H12B···O2 | 0.96 | 2.43 | 2.915 (13) | 111 |
C13—H13A···O2 | 0.96 | 2.38 | 2.951 (10) | 117 |
C12—H12B···Cg1 | 0.96 | 2.92 | 3.854 (11) | 165 |
C12—H12B···Cg2 | 0.96 | 2.71 | 3.434 (11) | 133 |
Experimental details
Crystal data | |
Chemical formula | C19H19BrN2O2S |
Mr | 419.33 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 298 |
a, b, c (Å) | 13.3957 (7), 5.7366 (3), 13.3956 (7) |
β (°) | 115.541 (1) |
V (Å3) | 928.81 (8) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 2.34 |
Crystal size (mm) | 0.20 × 0.10 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.652, 0.800 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5798, 3228, 2346 |
Rint | 0.106 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.067, 0.204, 1.07 |
No. of reflections | 3228 |
No. of parameters | 228 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.67, −0.63 |
Absolute structure | Flack (1983), 1424 Friedel pairs |
Absolute structure parameter | 0.00 (8) |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SAINT, SHELXS97 (Sheldrick, 1990), SHELXL97 (Sheldrick, 1997), PLATON (Spek, 2003), SHELXTL (Sheldrick, 1997).
D—H···A | D—H | H···A | D···A | D—H···A |
C11—H11···O1 | 0.98 | 2.20 | 2.726 (10) | 112.1 |
C12—H12B···O2 | 0.96 | 2.43 | 2.915 (13) | 110.7 |
C13—H13A···O2 | 0.96 | 2.38 | 2.951 (10) | 117.4 |
C12—H12B···Cg1 | 0.96 | 2.92 | 3.854 (11) | 165 |
C12—H12B···Cg2 | 0.96 | 2.71 | 3.434 (11) | 133 |
Acknowledgements
We gratefully acknowledge financial support of this work by the Research Foundation for Students and Teachers of Yunyang Medical College (grant Nos. 2007QDJ15, 2007ZQB19, 2007ZQB20).
References
Allen, F. H. (2002). Acta Cryst. B58, 380–388. Web of Science CrossRef CAS IUCr Journals Google Scholar
Bruker (2001). SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Ding, M. W., Xu, S. Z. & Zhao, J. F. (2004). J. Org. Chem. 69, 8366–8371. Web of Science CrossRef PubMed CAS Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2003). J. Appl. Cryst. 36, 7–13. Web of Science CrossRef CAS IUCr Journals Google Scholar
Zeng, X.-H., Ding, M.-W. & He, H.-W. (2006). Acta Cryst. E62, o731–o732. Web of Science CSD CrossRef IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Pyrimidine derivatives are attracting the increasing attention of synthetic community because of the important role played by such systems in many natural products, antibiotics and drugs (Ding et al., 2004). In recent years, we have been engaged in the preparation of the derivatives of heterocycles via aza-Wittig reaction. The title compound, (I), was synthesized and structurally characterized in this context.
The molecular structure indicates that the thieno[2,3-d]pyrimidine moiety is a conjugated system (Fig. 1). All ring atoms in thieno[2,3-d]pyrimidine are essentially coplanar (Zeng et al., 2006). The bond lengths and angles are within experimental error, in the ranges of values in previously reported structures in the Cambridge Structural Database (Version 5.26; Allen, 2002).
The cyclohexene ring adopts a half-chair conformation. The crystal packing is stabilized by three intramolecular C—H···O hydrogen bonds and two C—H···π interactions (Table 1). There exist no intermolecular hydrogen bonding interactions and no π-π stackings.