organic compounds
Ethyl 1-(6-chloro-3-pyridylmethyl)-5-ethoxymethyleneamino-1H-1,2,3-triazole-4-carboxylate
aDepartment of Medicinal Chemistry, Yunyang Medical College, Shiyan 442000, People's Republic of China, and bSchool of Chemistry and Chemical Engineering, Henan Institute of Science and Technology, Xinxiang 453003, Henan, People's Republic of China
*Correspondence e-mail: chenxiaobao@yahoo.com.cn
In the title compound, C14H16ClN5O3, there is evidence for significant electron delocalization in the triazolyl system. Intramolecular C—H⋯O and intermolecular C—H⋯O and C—H⋯N hydrogen bonds stabilize the structure.
Related literature
Many derivatives of triazole have been prepared, and their biological activities have been studied, see: Ogura et al. (2000a,b); Najim et al. (2004); Banks & Chubb (1999a,b); Shuto et al. (1995a,b); Yuan et al. (2006); Chen et al. (2005); Liu et al. (2001). For the synthesis, see: Chen & Shi (2008). For bond-length data, see: Sasada (1984); Wang et al. (1998).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: SMART (Bruker, 2000); cell SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536808037197/at2675sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808037197/at2675Isup2.hkl
A solution of compound 1-((6-chloropyridin-3-yl)methyl)-4-ethoxycarbonyl-5-amine-1H-1,2,3- triazole (2 mmol) in triethyl ortho formate (10 ml) was refluxed for 4 h, cooled briefly and evaporated. The residue was purified by
on a silica gel column by eluting with petroleum ether/acetone (2:1, v/v) to give the title compound (yield 75%). Colourless crystals of (I) suitable for X-ray structure analysis were grown from acetone and petroleum ether (1:3, v/v).H atoms bonded to C were placed at calculated positions, with C—H = 0.93–0.97 Å and refined using a riding model, with Uiso(H) = 1.2Ueq(C), or 1.5Ueq(methyl C).
Data collection: SMART (Bruker, 2000); cell
SAINT (Bruker, 2000); data reduction: SAINT (Bruker, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C14H16ClN5O3 | F(000) = 704 |
Mr = 337.77 | Dx = 1.375 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 4752 reflections |
a = 16.8823 (17) Å | θ = 2.7–27.8° |
b = 6.3134 (6) Å | µ = 0.26 mm−1 |
c = 15.3065 (15) Å | T = 291 K |
β = 90.980 (1)° | Block, colourless |
V = 1631.2 (3) Å3 | 0.50 × 0.47 × 0.36 mm |
Z = 4 |
Bruker SMART APEX CCD area-detector diffractometer | 2551 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.014 |
Graphite monochromator | θmax = 25.5°, θmin = 2.7° |
ϕ and ω scans | h = −20→20 |
10092 measured reflections | k = −7→7 |
2980 independent reflections | l = −18→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.098 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0449P)2 + 0.5005P] where P = (Fo2 + 2Fc2)/3 |
2980 reflections | (Δ/σ)max = 0.001 |
210 parameters | Δρmax = 0.25 e Å−3 |
0 restraints | Δρmin = −0.40 e Å−3 |
C14H16ClN5O3 | V = 1631.2 (3) Å3 |
Mr = 337.77 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 16.8823 (17) Å | µ = 0.26 mm−1 |
b = 6.3134 (6) Å | T = 291 K |
c = 15.3065 (15) Å | 0.50 × 0.47 × 0.36 mm |
β = 90.980 (1)° |
Bruker SMART APEX CCD area-detector diffractometer | 2551 reflections with I > 2σ(I) |
10092 measured reflections | Rint = 0.014 |
2980 independent reflections |
R[F2 > 2σ(F2)] = 0.036 | 0 restraints |
wR(F2) = 0.098 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.25 e Å−3 |
2980 reflections | Δρmin = −0.40 e Å−3 |
210 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.36873 (3) | 0.34616 (9) | 0.06142 (3) | 0.07336 (19) | |
O1 | 0.89923 (7) | 0.8586 (2) | −0.04595 (8) | 0.0571 (3) | |
O2 | 0.91635 (9) | 0.6353 (3) | 0.06636 (11) | 0.0821 (5) | |
O3 | 0.80412 (9) | 0.27638 (19) | 0.22225 (8) | 0.0633 (4) | |
N1 | 0.50169 (9) | 0.4258 (2) | 0.14254 (10) | 0.0559 (4) | |
N2 | 0.69532 (8) | 0.9067 (2) | 0.13235 (8) | 0.0440 (3) | |
N3 | 0.69871 (8) | 1.0541 (2) | 0.06795 (9) | 0.0499 (3) | |
N4 | 0.76295 (8) | 1.0162 (2) | 0.02373 (9) | 0.0494 (3) | |
N5 | 0.76407 (8) | 0.6142 (2) | 0.19200 (8) | 0.0470 (3) | |
C1 | 0.44375 (10) | 0.5167 (3) | 0.09780 (10) | 0.0480 (4) | |
C2 | 0.43841 (11) | 0.7289 (3) | 0.07976 (12) | 0.0582 (5) | |
H2 | 0.3959 | 0.7842 | 0.0477 | 0.070* | |
C3 | 0.49856 (10) | 0.8571 (3) | 0.11104 (12) | 0.0545 (4) | |
H3 | 0.4972 | 1.0021 | 0.1004 | 0.065* | |
C4 | 0.56076 (9) | 0.7699 (3) | 0.15809 (10) | 0.0422 (4) | |
C5 | 0.55899 (10) | 0.5546 (3) | 0.17194 (12) | 0.0535 (4) | |
H5 | 0.6006 | 0.4946 | 0.2040 | 0.064* | |
C6 | 0.62874 (10) | 0.9037 (3) | 0.19223 (11) | 0.0504 (4) | |
H6A | 0.6103 | 1.0475 | 0.2012 | 0.061* | |
H6B | 0.6466 | 0.8485 | 0.2483 | 0.061* | |
C7 | 0.80079 (9) | 0.8443 (2) | 0.05900 (10) | 0.0443 (4) | |
C8 | 0.87732 (10) | 0.7667 (3) | 0.02805 (12) | 0.0515 (4) | |
C9 | 0.97474 (11) | 0.7873 (3) | −0.08109 (14) | 0.0676 (5) | |
H9A | 0.9744 | 0.6348 | −0.0885 | 0.081* | |
H9B | 1.0179 | 0.8246 | −0.0414 | 0.081* | |
C10 | 0.98505 (15) | 0.8939 (5) | −0.16692 (17) | 0.0994 (9) | |
H10A | 0.9433 | 0.8509 | −0.2065 | 0.149* | |
H10B | 1.0353 | 0.8547 | −0.1905 | 0.149* | |
H10C | 0.9832 | 1.0446 | −0.1591 | 0.149* | |
C11 | 0.75714 (9) | 0.7719 (2) | 0.12926 (10) | 0.0424 (4) | |
C12 | 0.79167 (12) | 0.4373 (3) | 0.16850 (11) | 0.0580 (5) | |
H12 | 0.8039 | 0.4194 | 0.1100 | 0.070* | |
C13 | 0.78506 (12) | 0.3050 (3) | 0.31347 (11) | 0.0584 (5) | |
H13A | 0.7281 | 0.3109 | 0.3205 | 0.070* | |
H13B | 0.8080 | 0.4356 | 0.3357 | 0.070* | |
C14 | 0.81906 (16) | 0.1190 (4) | 0.36122 (14) | 0.0812 (7) | |
H14A | 0.7993 | −0.0094 | 0.3353 | 0.122* | |
H14B | 0.8040 | 0.1248 | 0.4214 | 0.122* | |
H14C | 0.8758 | 0.1219 | 0.3578 | 0.122* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0601 (3) | 0.0926 (4) | 0.0674 (3) | −0.0200 (3) | 0.0024 (2) | −0.0204 (3) |
O1 | 0.0478 (7) | 0.0593 (7) | 0.0647 (7) | 0.0024 (5) | 0.0108 (6) | 0.0029 (6) |
O2 | 0.0658 (9) | 0.0824 (10) | 0.0985 (11) | 0.0239 (8) | 0.0096 (8) | 0.0267 (9) |
O3 | 0.0954 (10) | 0.0428 (7) | 0.0519 (7) | 0.0049 (6) | 0.0048 (7) | 0.0053 (5) |
N1 | 0.0510 (8) | 0.0480 (8) | 0.0687 (9) | −0.0032 (7) | −0.0003 (7) | 0.0059 (7) |
N2 | 0.0445 (7) | 0.0411 (7) | 0.0464 (7) | −0.0041 (6) | −0.0016 (6) | 0.0019 (6) |
N3 | 0.0495 (8) | 0.0455 (8) | 0.0546 (8) | −0.0002 (6) | −0.0009 (6) | 0.0080 (6) |
N4 | 0.0477 (8) | 0.0475 (8) | 0.0529 (8) | −0.0023 (6) | −0.0001 (6) | 0.0067 (6) |
N5 | 0.0504 (8) | 0.0442 (8) | 0.0461 (7) | −0.0011 (6) | −0.0046 (6) | 0.0045 (6) |
C1 | 0.0440 (9) | 0.0595 (10) | 0.0409 (8) | −0.0040 (7) | 0.0085 (7) | −0.0054 (7) |
C2 | 0.0475 (10) | 0.0673 (12) | 0.0596 (10) | 0.0089 (8) | −0.0050 (8) | 0.0090 (9) |
C3 | 0.0537 (10) | 0.0448 (9) | 0.0652 (11) | 0.0078 (8) | 0.0022 (8) | 0.0091 (8) |
C4 | 0.0437 (8) | 0.0440 (8) | 0.0391 (8) | 0.0033 (7) | 0.0078 (6) | 0.0001 (7) |
C5 | 0.0482 (9) | 0.0501 (10) | 0.0620 (10) | 0.0016 (8) | −0.0058 (8) | 0.0132 (8) |
C6 | 0.0540 (10) | 0.0485 (9) | 0.0490 (9) | −0.0009 (8) | 0.0061 (7) | −0.0045 (7) |
C7 | 0.0437 (9) | 0.0413 (8) | 0.0476 (9) | −0.0043 (7) | −0.0045 (7) | 0.0016 (7) |
C8 | 0.0461 (9) | 0.0477 (9) | 0.0607 (10) | −0.0032 (7) | −0.0022 (8) | 0.0003 (8) |
C9 | 0.0483 (10) | 0.0690 (12) | 0.0859 (14) | 0.0012 (9) | 0.0135 (10) | −0.0138 (11) |
C10 | 0.0811 (16) | 0.127 (2) | 0.0917 (17) | 0.0149 (16) | 0.0392 (14) | 0.0044 (16) |
C11 | 0.0437 (8) | 0.0391 (8) | 0.0441 (8) | −0.0044 (7) | −0.0070 (7) | −0.0013 (7) |
C12 | 0.0857 (13) | 0.0450 (10) | 0.0434 (9) | −0.0065 (9) | 0.0000 (9) | 0.0018 (8) |
C13 | 0.0672 (12) | 0.0585 (11) | 0.0494 (9) | 0.0055 (9) | 0.0033 (8) | 0.0074 (8) |
C14 | 0.1104 (18) | 0.0668 (13) | 0.0665 (13) | 0.0154 (12) | 0.0013 (12) | 0.0190 (11) |
Cl1—C1 | 1.7462 (17) | C4—C5 | 1.376 (2) |
O1—C8 | 1.331 (2) | C4—C6 | 1.511 (2) |
O1—C9 | 1.463 (2) | C5—H5 | 0.9300 |
O2—C8 | 1.205 (2) | C6—H6A | 0.9700 |
O3—C12 | 1.322 (2) | C6—H6B | 0.9700 |
O3—C13 | 1.450 (2) | C7—C11 | 1.391 (2) |
N1—C1 | 1.316 (2) | C7—C8 | 1.468 (2) |
N1—C5 | 1.336 (2) | C9—C10 | 1.489 (3) |
N2—C11 | 1.348 (2) | C9—H9A | 0.9700 |
N2—N3 | 1.3579 (18) | C9—H9B | 0.9700 |
N2—C6 | 1.463 (2) | C10—H10A | 0.9600 |
N3—N4 | 1.3103 (19) | C10—H10B | 0.9600 |
N4—C7 | 1.366 (2) | C10—H10C | 0.9600 |
N5—C12 | 1.264 (2) | C12—H12 | 0.9300 |
N5—C11 | 1.387 (2) | C13—C14 | 1.493 (3) |
C1—C2 | 1.371 (3) | C13—H13A | 0.9700 |
C2—C3 | 1.378 (3) | C13—H13B | 0.9700 |
C2—H2 | 0.9300 | C14—H14A | 0.9600 |
C3—C4 | 1.378 (2) | C14—H14B | 0.9600 |
C3—H3 | 0.9300 | C14—H14C | 0.9600 |
C8—O1—C9 | 115.82 (15) | O2—C8—O1 | 123.82 (16) |
C12—O3—C13 | 117.92 (14) | O2—C8—C7 | 123.34 (17) |
C1—N1—C5 | 115.93 (15) | O1—C8—C7 | 112.83 (15) |
C11—N2—N3 | 111.41 (13) | O1—C9—C10 | 107.54 (18) |
C11—N2—C6 | 128.15 (13) | O1—C9—H9A | 110.2 |
N3—N2—C6 | 120.40 (13) | C10—C9—H9A | 110.2 |
N4—N3—N2 | 107.16 (13) | O1—C9—H9B | 110.2 |
N3—N4—C7 | 109.08 (13) | C10—C9—H9B | 110.2 |
C12—N5—C11 | 117.65 (14) | H9A—C9—H9B | 108.5 |
N1—C1—C2 | 125.22 (16) | C9—C10—H10A | 109.5 |
N1—C1—Cl1 | 115.20 (13) | C9—C10—H10B | 109.5 |
C2—C1—Cl1 | 119.57 (14) | H10A—C10—H10B | 109.5 |
C1—C2—C3 | 117.28 (16) | C9—C10—H10C | 109.5 |
C1—C2—H2 | 121.4 | H10A—C10—H10C | 109.5 |
C3—C2—H2 | 121.4 | H10B—C10—H10C | 109.5 |
C4—C3—C2 | 119.84 (16) | N2—C11—N5 | 119.02 (14) |
C4—C3—H3 | 120.1 | N2—C11—C7 | 103.90 (13) |
C2—C3—H3 | 120.1 | N5—C11—C7 | 137.02 (15) |
C5—C4—C3 | 117.18 (16) | N5—C12—O3 | 123.85 (16) |
C5—C4—C6 | 121.16 (15) | N5—C12—H12 | 118.1 |
C3—C4—C6 | 121.65 (15) | O3—C12—H12 | 118.1 |
N1—C5—C4 | 124.54 (16) | O3—C13—C14 | 106.49 (16) |
N1—C5—H5 | 117.7 | O3—C13—H13A | 110.4 |
C4—C5—H5 | 117.7 | C14—C13—H13A | 110.4 |
N2—C6—C4 | 112.19 (13) | O3—C13—H13B | 110.4 |
N2—C6—H6A | 109.2 | C14—C13—H13B | 110.4 |
C4—C6—H6A | 109.2 | H13A—C13—H13B | 108.6 |
N2—C6—H6B | 109.2 | C13—C14—H14A | 109.5 |
C4—C6—H6B | 109.2 | C13—C14—H14B | 109.5 |
H6A—C6—H6B | 107.9 | H14A—C14—H14B | 109.5 |
N4—C7—C11 | 108.44 (14) | C13—C14—H14C | 109.5 |
N4—C7—C8 | 123.09 (14) | H14A—C14—H14C | 109.5 |
C11—C7—C8 | 128.35 (15) | H14B—C14—H14C | 109.5 |
C11—N2—N3—N4 | −0.55 (17) | C9—O1—C8—C7 | −179.47 (14) |
C6—N2—N3—N4 | −178.53 (13) | N4—C7—C8—O2 | 169.02 (17) |
N2—N3—N4—C7 | 0.30 (17) | C11—C7—C8—O2 | −6.6 (3) |
C5—N1—C1—C2 | 0.0 (3) | N4—C7—C8—O1 | −10.2 (2) |
C5—N1—C1—Cl1 | −179.06 (13) | C11—C7—C8—O1 | 174.16 (15) |
N1—C1—C2—C3 | 0.0 (3) | C8—O1—C9—C10 | 175.16 (19) |
Cl1—C1—C2—C3 | 179.07 (13) | N3—N2—C11—N5 | 178.28 (13) |
C1—C2—C3—C4 | 0.2 (3) | C6—N2—C11—N5 | −3.9 (2) |
C2—C3—C4—C5 | −0.4 (2) | N3—N2—C11—C7 | 0.55 (17) |
C2—C3—C4—C6 | 178.87 (15) | C6—N2—C11—C7 | 178.34 (14) |
C1—N1—C5—C4 | −0.3 (3) | C12—N5—C11—N2 | 144.61 (16) |
C3—C4—C5—N1 | 0.4 (3) | C12—N5—C11—C7 | −38.6 (3) |
C6—C4—C5—N1 | −178.81 (16) | N4—C7—C11—N2 | −0.36 (17) |
C11—N2—C6—C4 | −88.86 (19) | C8—C7—C11—N2 | 175.79 (15) |
N3—N2—C6—C4 | 88.75 (17) | N4—C7—C11—N5 | −177.45 (17) |
C5—C4—C6—N2 | 85.12 (19) | C8—C7—C11—N5 | −1.3 (3) |
C3—C4—C6—N2 | −94.08 (18) | C11—N5—C12—O3 | 177.40 (16) |
N3—N4—C7—C11 | 0.04 (18) | C13—O3—C12—N5 | −0.1 (3) |
N3—N4—C7—C8 | −176.36 (15) | C12—O3—C13—C14 | −169.17 (18) |
C9—O1—C8—O2 | 1.3 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···N3i | 0.93 | 2.57 | 3.488 (2) | 167 |
C9—H9A···O2ii | 0.97 | 2.53 | 3.246 (3) | 131 |
C12—H12···O2 | 0.93 | 2.44 | 2.924 (3) | 112 |
Symmetry codes: (i) −x+1, −y+2, −z; (ii) −x+2, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C14H16ClN5O3 |
Mr | 337.77 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 291 |
a, b, c (Å) | 16.8823 (17), 6.3134 (6), 15.3065 (15) |
β (°) | 90.980 (1) |
V (Å3) | 1631.2 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.26 |
Crystal size (mm) | 0.50 × 0.47 × 0.36 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD area-detector diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10092, 2980, 2551 |
Rint | 0.014 |
(sin θ/λ)max (Å−1) | 0.606 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.036, 0.098, 1.04 |
No. of reflections | 2980 |
No. of parameters | 210 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.25, −0.40 |
Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 2000), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···N3i | 0.93 | 2.57 | 3.488 (2) | 167.00 |
C9—H9A···O2ii | 0.97 | 2.53 | 3.246 (3) | 131.00 |
C12—H12···O2 | 0.93 | 2.44 | 2.924 (3) | 112.00 |
Symmetry codes: (i) −x+1, −y+2, −z; (ii) −x+2, −y+1, −z. |
Acknowledgements
The authors gratefully acknowledge financial support of this work by Yunyang Medical College (grant No. 2007ZQB24).
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It is well known that many triazole-related molecules play an important role in the development of agrochemicals such as insecticides, nematocides, acaricide and plant growth regulators (Ogura et al., 2000a,b; Najim et al., 2004; Banks & Chubb, 1999a,b); Shuto et al., 1995a,b; Yuan et al., 2006; Chen et al., 2005 and Liu et al., 2001). Since the structure-activity relationship is very useful in the rational design of pharmaceuticals and agrochemicals. We report here the crystal structure of the title compound, (I) (Fig. 1), which was synthesized by introducing pyridine rings into a 1,2,3-triazole molecular framework.
In the title compound (I), the C7—N4 and C11—N2 bonds [1.366 (2) and 1.348 (2) Å] are significantly shorter than that of the single bond of C—N (1.47 Å; Sasada, 1984) and close to the value of the double bond of C—N (1.28 Å; Wang et al., 1998). This indicates significant electron delocalization in the triazolyl system. Intramolecular C—H···O and intermolecular C—H···O and C—H···N hydrogen bonds contribute strongly to the stability of the molecular configuration (Fig.2, Table 1).