metal-organic compounds
Nitrato[N,N,N′,N′-tetrakis(1H-benzimidazol-2-ylmethyl)ethane-1,2-diamine]calcium(II) nitrate methanol trisolvate
aKey Laboratory of Pesticides and Chemical Biology, Department of Chemistry, Central China Normal University, Wuhan, Hubei 430079, People's Republic of China
*Correspondence e-mail: wl_928@mail.ccnu.edu.cn
In the title compound, [Ca(NO3)(C34H32N10)]NO3·3CH4O, the CaII ion is coordinated by six N atoms of the EDTB ligand {EDTB is N,N,N′,N′-tetrakis[(2-benzimidazolyl)methyl]-1,2-ethanediamine} and two O atoms from the nitrate ligand, to form a distorted dodecahedral geometry. The crystal packing is stabilized by intermolecular N—H⋯O, N—H⋯N and O—H⋯O hydrogen bonds, which link the constituent units into a three-dimensional network. The uncoordinated nitrate anion is disordered over two sites, with fixed occupancies of 0.77 and 0.23.
Related literature
For general background, see: Chen et al. (2004); Liao et al. (2001); Pei et al. (2007). For the synthesis of the EDTB ligand, see: Hendriks et al. (1982).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2001); cell SAINT-Plus (Bruker, 2001); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536808037859/ci2674sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808037859/ci2674Isup2.hkl
N,N,N',N'-Tetrakis-[(2-benzimidazolyl)methyl] -1,2-ethanediamine (EDTB) ligand was synthesized according to the literature method (Hendriks et al., 1982). EDTB (0.58 g, 1.0 mmol) in hot methanol (20 ml) was added slowly to a solution of Ca(NO3)2.4H2O (0.236 g, 1.0 mmol) in methanol (10 ml) and the mixture was stirred for 1 h. After filtration, the solution was allowed to stand at room temperature. Block-shaped pale red crystals suitable for X-ray analysis were obtained after several days in 45% yield.
The nitrate anion is disordered over two sites. The site occupancies were initially refined to 0.77 (1) and 0.23 (1) for the major and minor components, respectively, and later fixed. In both disorder components, the N—O distances were restrained to 1.38 (1) Å and the O···O distances were restrained to be equal. C-bound H atoms were positioned geometrically (C—H = 0.93–0.97 Å) and were refined as riding with Uiso(H) = 1.2–1.5Ueq(C). O– and N-bound H atoms were first located in a difference map and then constrained to be at their ideal positions (O—H = 0.82 Å and N—H = 0.86 Å) with Uiso values set at 1.2Ueq(N) and 1.5Ueq(O).
Data collection: SMART (Bruker, 2001); cell
SAINT-Plus (Bruker, 2001); data reduction: SAINT-Plus (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The asymmetric unit of the title compound. Displacement ellipsoids are drawn at the 50% probability level. Only the major component of the disordered nitrate ion is shown. | |
Fig. 2. The crystal structure of the title compound, viewed along the a axis. Hydrogen bonds are shown as dashed lines. |
[Ca(NO3)(C34H32N10)]NO3·3CH4O | F(000) = 1768 |
Mr = 840.92 | Dx = 1.336 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 6962 reflections |
a = 9.5945 (4) Å | θ = 2.2–21.4° |
b = 25.3531 (11) Å | µ = 0.22 mm−1 |
c = 17.8402 (7) Å | T = 294 K |
β = 105.599 (1)° | Block, pale-red |
V = 4179.8 (3) Å3 | 0.20 × 0.20 × 0.10 mm |
Z = 4 |
Bruker SMART CCD area-detector diffractometer | 8189 independent reflections |
Radiation source: fine-focus sealed tube | 4825 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.146 |
ϕ and ω scans | θmax = 26.0°, θmin = 1.4° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2001) | h = −11→11 |
Tmin = 0.948, Tmax = 0.979 | k = −31→31 |
43547 measured reflections | l = −22→22 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.065 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.171 | H-atom parameters constrained |
S = 0.90 | w = 1/[σ2(Fo2) + (0.0978P)2] where P = (Fo2 + 2Fc2)/3 |
8189 reflections | (Δ/σ)max = 0.001 |
575 parameters | Δρmax = 0.47 e Å−3 |
23 restraints | Δρmin = −0.38 e Å−3 |
[Ca(NO3)(C34H32N10)]NO3·3CH4O | V = 4179.8 (3) Å3 |
Mr = 840.92 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.5945 (4) Å | µ = 0.22 mm−1 |
b = 25.3531 (11) Å | T = 294 K |
c = 17.8402 (7) Å | 0.20 × 0.20 × 0.10 mm |
β = 105.599 (1)° |
Bruker SMART CCD area-detector diffractometer | 8189 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2001) | 4825 reflections with I > 2σ(I) |
Tmin = 0.948, Tmax = 0.979 | Rint = 0.146 |
43547 measured reflections |
R[F2 > 2σ(F2)] = 0.065 | 23 restraints |
wR(F2) = 0.171 | H-atom parameters constrained |
S = 0.90 | Δρmax = 0.47 e Å−3 |
8189 reflections | Δρmin = −0.38 e Å−3 |
575 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Ca1 | 0.93863 (6) | 0.24863 (2) | 0.58359 (3) | 0.03938 (18) | |
C1 | 0.7836 (3) | 0.14868 (11) | 0.65167 (19) | 0.0572 (8) | |
H1A | 0.7070 | 0.1277 | 0.6628 | 0.069* | |
H1B | 0.8678 | 0.1467 | 0.6962 | 0.069* | |
C2 | 0.8201 (3) | 0.12762 (11) | 0.58169 (19) | 0.0540 (8) | |
C3 | 0.8889 (3) | 0.12150 (12) | 0.47646 (19) | 0.0588 (8) | |
C4 | 0.9379 (4) | 0.12879 (15) | 0.4103 (2) | 0.0768 (11) | |
H4 | 0.9689 | 0.1618 | 0.3986 | 0.092* | |
C5 | 0.9393 (5) | 0.08604 (18) | 0.3627 (3) | 0.1052 (15) | |
H5 | 0.9736 | 0.0900 | 0.3190 | 0.126* | |
C6 | 0.8897 (7) | 0.03698 (19) | 0.3796 (3) | 0.136 (2) | |
H6 | 0.8907 | 0.0088 | 0.3464 | 0.163* | |
C7 | 0.8402 (7) | 0.02916 (18) | 0.4427 (3) | 0.138 (2) | |
H7 | 0.8071 | −0.0037 | 0.4534 | 0.165* | |
C8 | 0.8404 (5) | 0.07194 (13) | 0.4911 (2) | 0.0808 (11) | |
C9 | 0.5963 (3) | 0.20632 (12) | 0.57942 (19) | 0.0571 (8) | |
H9A | 0.5191 | 0.2042 | 0.6049 | 0.069* | |
H9B | 0.5873 | 0.1765 | 0.5444 | 0.069* | |
C10 | 0.5819 (3) | 0.25616 (11) | 0.53395 (17) | 0.0459 (7) | |
C11 | 0.6306 (3) | 0.32351 (11) | 0.47183 (16) | 0.0460 (7) | |
C12 | 0.6945 (4) | 0.36285 (12) | 0.43761 (19) | 0.0595 (8) | |
H12 | 0.7945 | 0.3664 | 0.4495 | 0.071* | |
C13 | 0.6052 (4) | 0.39592 (12) | 0.38618 (19) | 0.0643 (9) | |
H13 | 0.6457 | 0.4223 | 0.3626 | 0.077* | |
C14 | 0.4564 (4) | 0.39146 (12) | 0.3680 (2) | 0.0650 (9) | |
H14 | 0.3989 | 0.4148 | 0.3326 | 0.078* | |
C15 | 0.3923 (3) | 0.35281 (12) | 0.40159 (19) | 0.0594 (8) | |
H15 | 0.2922 | 0.3498 | 0.3902 | 0.071* | |
C16 | 0.4812 (3) | 0.31902 (11) | 0.45229 (17) | 0.0475 (7) | |
C17 | 0.7243 (3) | 0.23028 (13) | 0.71045 (18) | 0.0564 (8) | |
H17A | 0.6663 | 0.2620 | 0.6968 | 0.068* | |
H17B | 0.6743 | 0.2069 | 0.7376 | 0.068* | |
C18 | 0.8664 (3) | 0.24460 (12) | 0.76340 (18) | 0.0558 (8) | |
H18A | 0.8508 | 0.2620 | 0.8089 | 0.067* | |
H18B | 0.9208 | 0.2126 | 0.7808 | 0.067* | |
C19 | 0.8988 (3) | 0.33411 (11) | 0.72146 (19) | 0.0562 (8) | |
H19A | 0.9211 | 0.3500 | 0.7728 | 0.067* | |
H19B | 0.7945 | 0.3343 | 0.7000 | 0.067* | |
C20 | 0.9683 (3) | 0.36492 (11) | 0.67018 (17) | 0.0490 (7) | |
C21 | 1.0657 (3) | 0.38720 (11) | 0.57887 (18) | 0.0492 (7) | |
C22 | 1.1232 (4) | 0.39029 (12) | 0.5158 (2) | 0.0658 (9) | |
H22 | 1.1240 | 0.3608 | 0.4848 | 0.079* | |
C23 | 1.1795 (4) | 0.43753 (13) | 0.4995 (2) | 0.0844 (12) | |
H23 | 1.2177 | 0.4404 | 0.4569 | 0.101* | |
C24 | 1.1788 (5) | 0.48114 (14) | 0.5472 (3) | 0.0960 (14) | |
H24 | 1.2177 | 0.5127 | 0.5355 | 0.115* | |
C25 | 1.1242 (5) | 0.47959 (14) | 0.6094 (3) | 0.0881 (12) | |
H25 | 1.1257 | 0.5091 | 0.6406 | 0.106* | |
C26 | 1.0661 (3) | 0.43219 (11) | 0.6248 (2) | 0.0599 (8) | |
C27 | 1.1042 (3) | 0.27818 (12) | 0.77325 (17) | 0.0532 (8) | |
H27A | 1.1090 | 0.2774 | 0.8282 | 0.064* | |
H27B | 1.1536 | 0.3097 | 0.7632 | 0.064* | |
C28 | 1.1768 (3) | 0.23033 (11) | 0.75227 (16) | 0.0471 (7) | |
C29 | 1.2351 (3) | 0.16532 (11) | 0.68917 (17) | 0.0499 (7) | |
C30 | 1.2468 (4) | 0.12775 (13) | 0.6351 (2) | 0.0702 (10) | |
H30 | 1.1819 | 0.1267 | 0.5859 | 0.084* | |
C31 | 1.3574 (4) | 0.09212 (15) | 0.6566 (2) | 0.0813 (11) | |
H31 | 1.3682 | 0.0666 | 0.6212 | 0.098* | |
C32 | 1.4533 (4) | 0.09323 (14) | 0.7297 (2) | 0.0750 (10) | |
H32 | 1.5260 | 0.0679 | 0.7428 | 0.090* | |
C33 | 1.4440 (4) | 0.13041 (14) | 0.7828 (2) | 0.0664 (9) | |
H33 | 1.5094 | 0.1314 | 0.8319 | 0.080* | |
C34 | 1.3342 (3) | 0.16646 (11) | 0.76108 (17) | 0.0494 (7) | |
C35 | 0.3284 (6) | 0.1315 (2) | 0.4261 (3) | 0.1300 (19) | |
H35A | 0.3148 | 0.1053 | 0.4623 | 0.195* | |
H35B | 0.2691 | 0.1232 | 0.3750 | 0.195* | |
H35C | 0.3015 | 0.1655 | 0.4415 | 0.195* | |
C36 | 0.4021 (5) | 0.3258 (2) | 0.6834 (4) | 0.136 (2) | |
H36A | 0.3823 | 0.3240 | 0.7334 | 0.204* | |
H36B | 0.3868 | 0.2917 | 0.6591 | 0.204* | |
H36C | 0.3385 | 0.3510 | 0.6513 | 0.204* | |
C37 | 0.6019 (7) | 0.4540 (3) | 0.5955 (4) | 0.147 (2) | |
H37A | 0.5568 | 0.4879 | 0.5834 | 0.220* | |
H37B | 0.5512 | 0.4285 | 0.5584 | 0.220* | |
H37C | 0.7008 | 0.4561 | 0.5936 | 0.220* | |
N1 | 0.7361 (2) | 0.20398 (9) | 0.63783 (14) | 0.0480 (6) | |
N2 | 0.9530 (2) | 0.27953 (9) | 0.72732 (13) | 0.0463 (6) | |
N3 | 0.8747 (3) | 0.15622 (9) | 0.53404 (14) | 0.0510 (6) | |
N4 | 0.7990 (4) | 0.07761 (10) | 0.55867 (19) | 0.0832 (9) | |
H4A | 0.7653 | 0.0530 | 0.5821 | 0.100* | |
N5 | 0.6927 (2) | 0.28340 (9) | 0.52322 (14) | 0.0488 (6) | |
N6 | 0.4545 (2) | 0.27564 (10) | 0.49387 (15) | 0.0530 (6) | |
H6A | 0.3708 | 0.2635 | 0.4938 | 0.064* | |
N7 | 1.0047 (2) | 0.34531 (9) | 0.60981 (14) | 0.0480 (6) | |
N8 | 1.0045 (3) | 0.41587 (10) | 0.68268 (16) | 0.0637 (7) | |
H8 | 0.9917 | 0.4350 | 0.7201 | 0.076* | |
N9 | 1.1344 (2) | 0.20637 (9) | 0.68459 (13) | 0.0507 (6) | |
N10 | 1.2934 (3) | 0.20879 (10) | 0.79974 (14) | 0.0539 (6) | |
H10 | 1.3361 | 0.2192 | 0.8461 | 0.065* | |
N11 | 1.0825 (3) | 0.25741 (8) | 0.45680 (15) | 0.0452 (6) | |
O1 | 0.9506 (2) | 0.26521 (8) | 0.45075 (11) | 0.0521 (5) | |
O2 | 1.1601 (2) | 0.24507 (8) | 0.52220 (12) | 0.0590 (6) | |
O3 | 1.1313 (2) | 0.26311 (10) | 0.40031 (13) | 0.0689 (6) | |
N12 | 0.8396 (12) | 0.4913 (3) | 0.8304 (5) | 0.109 (5) | 0.77 |
O4 | 0.9043 (11) | 0.4561 (3) | 0.8003 (5) | 0.205 (5) | 0.77 |
O5 | 0.7299 (9) | 0.5142 (3) | 0.7906 (5) | 0.155 (4) | 0.77 |
O6 | 0.8972 (10) | 0.5031 (4) | 0.9014 (5) | 0.142 (4) | 0.77 |
O7 | 0.4716 (5) | 0.13242 (19) | 0.4254 (3) | 0.1470 (14) | |
H7A | 0.4895 | 0.1063 | 0.4025 | 0.220* | |
O8 | 0.5364 (4) | 0.34029 (15) | 0.6924 (4) | 0.177 (2) | |
H8A | 0.5386 | 0.3713 | 0.6795 | 0.265* | |
O9 | 0.5977 (8) | 0.4396 (2) | 0.6665 (3) | 0.208 (2) | |
H9 | 0.6531 | 0.4582 | 0.6988 | 0.312* | |
O5' | 0.7826 (15) | 0.5023 (8) | 0.7646 (13) | 0.128 (10) | 0.23 |
O6' | 0.9780 (19) | 0.4577 (8) | 0.8264 (11) | 0.101 (6) | 0.23 |
N12' | 0.877 (2) | 0.4910 (9) | 0.8299 (11) | 0.13 (2) | 0.23 |
O4' | 0.834 (3) | 0.4922 (11) | 0.8925 (13) | 0.118 (9) | 0.23 |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ca1 | 0.0386 (3) | 0.0402 (3) | 0.0392 (3) | −0.0034 (2) | 0.0104 (2) | 0.0009 (2) |
C1 | 0.065 (2) | 0.0470 (17) | 0.065 (2) | −0.0038 (14) | 0.0252 (16) | 0.0093 (15) |
C2 | 0.0602 (19) | 0.0429 (16) | 0.0598 (19) | −0.0062 (14) | 0.0177 (16) | 0.0041 (14) |
C3 | 0.069 (2) | 0.0490 (18) | 0.059 (2) | −0.0120 (15) | 0.0190 (17) | −0.0078 (15) |
C4 | 0.102 (3) | 0.065 (2) | 0.072 (2) | −0.0244 (19) | 0.038 (2) | −0.0197 (18) |
C5 | 0.152 (4) | 0.090 (3) | 0.092 (3) | −0.031 (3) | 0.064 (3) | −0.033 (3) |
C6 | 0.223 (6) | 0.078 (3) | 0.131 (4) | −0.047 (4) | 0.092 (5) | −0.048 (3) |
C7 | 0.236 (7) | 0.066 (3) | 0.147 (5) | −0.056 (3) | 0.113 (5) | −0.039 (3) |
C8 | 0.120 (3) | 0.049 (2) | 0.085 (3) | −0.0203 (19) | 0.050 (2) | −0.0139 (18) |
C9 | 0.0488 (18) | 0.0552 (18) | 0.070 (2) | −0.0111 (14) | 0.0204 (16) | 0.0041 (16) |
C10 | 0.0356 (15) | 0.0493 (17) | 0.0527 (17) | −0.0026 (13) | 0.0117 (13) | −0.0022 (13) |
C11 | 0.0450 (17) | 0.0437 (16) | 0.0505 (17) | 0.0017 (12) | 0.0150 (13) | −0.0027 (13) |
C12 | 0.0568 (19) | 0.0535 (18) | 0.071 (2) | −0.0020 (15) | 0.0220 (17) | 0.0052 (16) |
C13 | 0.078 (2) | 0.0466 (18) | 0.068 (2) | −0.0015 (16) | 0.0188 (19) | 0.0037 (15) |
C14 | 0.074 (2) | 0.0493 (19) | 0.065 (2) | 0.0160 (17) | 0.0062 (18) | −0.0016 (16) |
C15 | 0.0529 (18) | 0.0546 (19) | 0.066 (2) | 0.0103 (15) | 0.0071 (16) | −0.0084 (16) |
C16 | 0.0443 (17) | 0.0490 (17) | 0.0481 (17) | 0.0025 (13) | 0.0107 (14) | −0.0079 (13) |
C17 | 0.060 (2) | 0.0584 (18) | 0.060 (2) | −0.0037 (15) | 0.0324 (17) | 0.0069 (15) |
C18 | 0.071 (2) | 0.0562 (18) | 0.0481 (17) | −0.0032 (15) | 0.0288 (16) | 0.0014 (14) |
C19 | 0.064 (2) | 0.0507 (18) | 0.062 (2) | 0.0030 (14) | 0.0301 (16) | −0.0033 (14) |
C20 | 0.0485 (17) | 0.0427 (16) | 0.0580 (19) | 0.0012 (13) | 0.0182 (15) | −0.0043 (14) |
C21 | 0.0526 (18) | 0.0419 (16) | 0.0576 (19) | −0.0071 (13) | 0.0222 (15) | −0.0049 (13) |
C22 | 0.085 (2) | 0.0462 (18) | 0.076 (2) | −0.0164 (16) | 0.038 (2) | −0.0129 (16) |
C23 | 0.118 (3) | 0.056 (2) | 0.102 (3) | −0.025 (2) | 0.067 (3) | −0.010 (2) |
C24 | 0.137 (4) | 0.052 (2) | 0.124 (4) | −0.034 (2) | 0.078 (3) | −0.014 (2) |
C25 | 0.126 (3) | 0.046 (2) | 0.109 (3) | −0.021 (2) | 0.061 (3) | −0.021 (2) |
C26 | 0.071 (2) | 0.0416 (17) | 0.076 (2) | −0.0046 (14) | 0.0355 (18) | −0.0061 (15) |
C27 | 0.0584 (19) | 0.0545 (18) | 0.0450 (17) | −0.0018 (14) | 0.0113 (15) | −0.0084 (14) |
C28 | 0.0476 (17) | 0.0537 (16) | 0.0385 (16) | −0.0039 (13) | 0.0089 (14) | −0.0003 (13) |
C29 | 0.0502 (17) | 0.0471 (16) | 0.0515 (18) | 0.0021 (13) | 0.0122 (14) | 0.0004 (13) |
C30 | 0.067 (2) | 0.067 (2) | 0.068 (2) | 0.0117 (17) | 0.0033 (18) | −0.0148 (18) |
C31 | 0.084 (3) | 0.062 (2) | 0.098 (3) | 0.0080 (19) | 0.024 (2) | −0.019 (2) |
C32 | 0.061 (2) | 0.064 (2) | 0.096 (3) | 0.0147 (17) | 0.015 (2) | 0.004 (2) |
C33 | 0.059 (2) | 0.069 (2) | 0.066 (2) | 0.0101 (17) | 0.0093 (17) | 0.0084 (18) |
C34 | 0.0456 (17) | 0.0530 (17) | 0.0482 (17) | −0.0010 (14) | 0.0102 (14) | 0.0057 (14) |
C35 | 0.120 (5) | 0.140 (5) | 0.141 (5) | −0.007 (4) | 0.054 (4) | −0.030 (4) |
C36 | 0.079 (3) | 0.154 (5) | 0.186 (6) | −0.009 (3) | 0.054 (4) | −0.033 (4) |
C37 | 0.193 (6) | 0.135 (5) | 0.122 (5) | −0.006 (4) | 0.059 (5) | 0.003 (4) |
N1 | 0.0480 (14) | 0.0466 (14) | 0.0518 (14) | −0.0044 (10) | 0.0176 (12) | 0.0054 (11) |
N2 | 0.0498 (14) | 0.0475 (14) | 0.0441 (14) | 0.0013 (11) | 0.0172 (11) | 0.0011 (10) |
N3 | 0.0591 (15) | 0.0444 (13) | 0.0510 (15) | −0.0113 (11) | 0.0176 (12) | −0.0040 (11) |
N4 | 0.126 (3) | 0.0428 (16) | 0.097 (2) | −0.0225 (16) | 0.057 (2) | 0.0000 (15) |
N5 | 0.0382 (13) | 0.0489 (14) | 0.0597 (15) | −0.0036 (10) | 0.0138 (12) | 0.0055 (11) |
N6 | 0.0340 (13) | 0.0583 (15) | 0.0665 (17) | −0.0058 (11) | 0.0134 (12) | −0.0002 (13) |
N7 | 0.0517 (14) | 0.0411 (13) | 0.0555 (15) | −0.0048 (11) | 0.0219 (12) | −0.0065 (11) |
N8 | 0.0808 (19) | 0.0448 (14) | 0.0768 (19) | −0.0018 (13) | 0.0407 (16) | −0.0149 (13) |
N9 | 0.0536 (15) | 0.0523 (14) | 0.0424 (14) | 0.0042 (11) | 0.0063 (11) | −0.0014 (11) |
N10 | 0.0521 (15) | 0.0625 (16) | 0.0404 (14) | 0.0001 (12) | 0.0009 (12) | −0.0049 (12) |
N11 | 0.0423 (14) | 0.0449 (13) | 0.0499 (15) | −0.0071 (10) | 0.0152 (12) | 0.0003 (11) |
O1 | 0.0349 (11) | 0.0757 (14) | 0.0457 (12) | −0.0008 (9) | 0.0107 (9) | 0.0087 (10) |
O2 | 0.0432 (11) | 0.0752 (15) | 0.0525 (13) | 0.0030 (10) | 0.0025 (10) | 0.0073 (11) |
O3 | 0.0608 (14) | 0.0940 (17) | 0.0617 (15) | −0.0026 (12) | 0.0334 (12) | 0.0064 (12) |
N12 | 0.169 (9) | 0.063 (6) | 0.134 (12) | −0.034 (5) | 0.107 (10) | −0.030 (6) |
O4 | 0.319 (12) | 0.123 (6) | 0.252 (11) | 0.008 (7) | 0.214 (10) | −0.065 (6) |
O5 | 0.243 (10) | 0.101 (4) | 0.126 (5) | −0.001 (5) | 0.058 (6) | −0.003 (4) |
O6 | 0.150 (7) | 0.116 (6) | 0.179 (8) | −0.010 (5) | 0.077 (6) | −0.051 (5) |
O7 | 0.128 (3) | 0.170 (4) | 0.132 (3) | −0.008 (3) | 0.018 (2) | −0.053 (3) |
O8 | 0.096 (3) | 0.113 (3) | 0.342 (7) | 0.029 (2) | 0.096 (3) | 0.051 (4) |
O9 | 0.299 (7) | 0.161 (4) | 0.176 (5) | −0.108 (4) | 0.086 (5) | −0.012 (4) |
O5' | 0.037 (7) | 0.111 (15) | 0.19 (2) | −0.029 (8) | −0.048 (11) | 0.074 (15) |
O6' | 0.157 (16) | 0.079 (11) | 0.068 (8) | −0.031 (10) | 0.031 (10) | 0.001 (7) |
N12' | 0.14 (3) | 0.12 (3) | 0.14 (4) | −0.03 (2) | 0.05 (3) | 0.00 (3) |
O4' | 0.13 (2) | 0.090 (15) | 0.130 (18) | 0.016 (14) | 0.034 (12) | −0.066 (12) |
Ca1—O1 | 2.440 (2) | C21—N7 | 1.396 (4) |
Ca1—N9 | 2.470 (2) | C21—C26 | 1.404 (4) |
Ca1—N5 | 2.477 (2) | C22—C23 | 1.377 (4) |
Ca1—N3 | 2.521 (2) | C22—H22 | 0.93 |
Ca1—N7 | 2.543 (2) | C23—C24 | 1.396 (5) |
Ca1—O2 | 2.641 (2) | C23—H23 | 0.93 |
Ca1—N1 | 2.647 (2) | C24—C25 | 1.349 (5) |
Ca1—N2 | 2.649 (2) | C24—H24 | 0.93 |
C1—N1 | 1.474 (4) | C25—C26 | 1.383 (5) |
C1—C2 | 1.484 (4) | C25—H25 | 0.93 |
C1—H1A | 0.97 | C26—N8 | 1.384 (4) |
C1—H1B | 0.97 | C27—N2 | 1.462 (3) |
C2—N3 | 1.328 (4) | C27—C28 | 1.496 (4) |
C2—N4 | 1.331 (4) | C27—H27A | 0.97 |
C3—N3 | 1.387 (4) | C27—H27B | 0.97 |
C3—C8 | 1.389 (4) | C28—N9 | 1.315 (3) |
C3—C4 | 1.394 (5) | C28—N10 | 1.326 (3) |
C4—C5 | 1.380 (5) | C29—C34 | 1.376 (4) |
C4—H4 | 0.93 | C29—C30 | 1.382 (4) |
C5—C6 | 1.394 (6) | C29—N9 | 1.407 (3) |
C5—H5 | 0.93 | C30—C31 | 1.368 (5) |
C6—C7 | 1.348 (6) | C30—H30 | 0.93 |
C6—H6 | 0.93 | C31—C32 | 1.379 (5) |
C7—C8 | 1.385 (5) | C31—H31 | 0.93 |
C7—H7 | 0.93 | C32—C33 | 1.357 (5) |
C8—N4 | 1.375 (4) | C32—H32 | 0.93 |
C9—N1 | 1.462 (4) | C33—C34 | 1.370 (4) |
C9—C10 | 1.488 (4) | C33—H33 | 0.93 |
C9—H9A | 0.97 | C34—N10 | 1.388 (4) |
C9—H9B | 0.97 | C35—O7 | 1.377 (6) |
C10—N5 | 1.324 (3) | C35—H35A | 0.96 |
C10—N6 | 1.334 (3) | C35—H35B | 0.96 |
C11—C16 | 1.386 (4) | C35—H35C | 0.96 |
C11—N5 | 1.391 (3) | C36—O8 | 1.308 (5) |
C11—C12 | 1.395 (4) | C36—H36A | 0.96 |
C12—C13 | 1.362 (4) | C36—H36B | 0.96 |
C12—H12 | 0.93 | C36—H36C | 0.96 |
C13—C14 | 1.381 (4) | C37—O9 | 1.328 (6) |
C13—H13 | 0.93 | C37—H37A | 0.96 |
C14—C15 | 1.377 (5) | C37—H37B | 0.96 |
C14—H14 | 0.93 | C37—H37C | 0.96 |
C15—C16 | 1.366 (4) | N4—H4A | 0.86 |
C15—H15 | 0.93 | N6—H6A | 0.86 |
C16—N6 | 1.388 (4) | N8—H8 | 0.86 |
C17—C18 | 1.480 (4) | N10—H10 | 0.86 |
C17—N1 | 1.488 (4) | N11—O3 | 1.229 (3) |
C17—H17A | 0.97 | N11—O2 | 1.244 (3) |
C17—H17B | 0.97 | N11—O1 | 1.257 (3) |
C18—N2 | 1.476 (4) | N12—O5 | 1.245 (8) |
C18—H18A | 0.97 | N12—O6 | 1.275 (7) |
C18—H18B | 0.97 | N12—O4 | 1.283 (8) |
C19—N2 | 1.472 (4) | O7—H7A | 0.82 |
C19—C20 | 1.490 (4) | O8—H8A | 0.82 |
C19—H19A | 0.97 | O9—H9 | 0.82 |
C19—H19B | 0.97 | O5'—N12' | 1.301 (10) |
C20—N7 | 1.316 (3) | O6'—N12' | 1.297 (10) |
C20—N8 | 1.340 (4) | N12'—O4' | 1.292 (10) |
C21—C22 | 1.382 (4) | ||
O1—Ca1—N9 | 123.93 (8) | C21—C22—H22 | 120.4 |
O1—Ca1—N5 | 78.72 (7) | C22—C23—C24 | 119.6 (3) |
N9—Ca1—N5 | 156.91 (8) | C22—C23—H23 | 120.2 |
O1—Ca1—N3 | 83.69 (8) | C24—C23—H23 | 120.2 |
N9—Ca1—N3 | 85.31 (8) | C25—C24—C23 | 123.0 (3) |
N5—Ca1—N3 | 93.72 (8) | C25—C24—H24 | 118.5 |
O1—Ca1—N7 | 86.46 (8) | C23—C24—H24 | 118.5 |
N9—Ca1—N7 | 100.42 (8) | C24—C25—C26 | 117.1 (3) |
N5—Ca1—N7 | 84.15 (8) | C24—C25—H25 | 121.4 |
N3—Ca1—N7 | 170.14 (8) | C26—C25—H25 | 121.4 |
O1—Ca1—O2 | 49.45 (6) | C25—C26—N8 | 133.2 (3) |
N9—Ca1—O2 | 75.46 (7) | C25—C26—C21 | 121.8 (3) |
N5—Ca1—O2 | 127.61 (7) | N8—C26—C21 | 105.0 (2) |
N3—Ca1—O2 | 88.27 (7) | N2—C27—C28 | 109.7 (2) |
N7—Ca1—O2 | 85.46 (7) | N2—C27—H27A | 109.7 |
O1—Ca1—N1 | 131.28 (7) | C28—C27—H27A | 109.7 |
N9—Ca1—N1 | 92.11 (8) | N2—C27—H27B | 109.7 |
N5—Ca1—N1 | 66.68 (7) | C28—C27—H27B | 109.7 |
N3—Ca1—N1 | 66.25 (8) | H27A—C27—H27B | 108.2 |
N7—Ca1—N1 | 121.07 (8) | N9—C28—N10 | 113.3 (3) |
O2—Ca1—N1 | 152.71 (7) | N9—C28—C27 | 123.7 (2) |
O1—Ca1—N2 | 152.31 (7) | N10—C28—C27 | 123.0 (2) |
N9—Ca1—N2 | 65.84 (7) | C34—C29—C30 | 120.0 (3) |
N5—Ca1—N2 | 96.39 (8) | C34—C29—N9 | 109.3 (3) |
N3—Ca1—N2 | 123.96 (8) | C30—C29—N9 | 130.7 (3) |
N7—Ca1—N2 | 65.88 (7) | C31—C30—C29 | 117.5 (3) |
O2—Ca1—N2 | 124.98 (7) | C31—C30—H30 | 121.2 |
N1—Ca1—N2 | 67.97 (7) | C29—C30—H30 | 121.2 |
N1—C1—C2 | 109.5 (2) | C30—C31—C32 | 121.5 (3) |
N1—C1—H1A | 109.8 | C30—C31—H31 | 119.3 |
C2—C1—H1A | 109.8 | C32—C31—H31 | 119.3 |
N1—C1—H1B | 109.8 | C33—C32—C31 | 121.5 (3) |
C2—C1—H1B | 109.8 | C33—C32—H32 | 119.2 |
H1A—C1—H1B | 108.2 | C31—C32—H32 | 119.2 |
N3—C2—N4 | 112.1 (3) | C32—C33—C34 | 117.1 (3) |
N3—C2—C1 | 124.4 (3) | C32—C33—H33 | 121.4 |
N4—C2—C1 | 123.5 (3) | C34—C33—H33 | 121.4 |
N3—C3—C8 | 109.3 (3) | C33—C34—C29 | 122.4 (3) |
N3—C3—C4 | 131.7 (3) | C33—C34—N10 | 132.3 (3) |
C8—C3—C4 | 119.0 (3) | C29—C34—N10 | 105.3 (2) |
C5—C4—C3 | 118.6 (4) | O7—C35—H35A | 109.5 |
C5—C4—H4 | 120.7 | O7—C35—H35B | 109.5 |
C3—C4—H4 | 120.7 | H35A—C35—H35B | 109.5 |
C4—C5—C6 | 120.5 (4) | O7—C35—H35C | 109.5 |
C4—C5—H5 | 119.8 | H35A—C35—H35C | 109.5 |
C6—C5—H5 | 119.8 | H35B—C35—H35C | 109.5 |
C7—C6—C5 | 122.0 (4) | O8—C36—H36A | 109.5 |
C7—C6—H6 | 119.0 | O8—C36—H36B | 109.5 |
C5—C6—H6 | 119.0 | H36A—C36—H36B | 109.5 |
C6—C7—C8 | 117.6 (4) | O8—C36—H36C | 109.5 |
C6—C7—H7 | 121.2 | H36A—C36—H36C | 109.5 |
C8—C7—H7 | 121.2 | H36B—C36—H36C | 109.5 |
N4—C8—C7 | 132.5 (4) | O9—C37—H37A | 109.5 |
N4—C8—C3 | 105.1 (3) | O9—C37—H37B | 109.5 |
C7—C8—C3 | 122.4 (4) | H37A—C37—H37B | 109.5 |
N1—C9—C10 | 110.9 (2) | O9—C37—H37C | 109.5 |
N1—C9—H9A | 109.5 | H37A—C37—H37C | 109.5 |
C10—C9—H9A | 109.5 | H37B—C37—H37C | 109.5 |
N1—C9—H9B | 109.5 | C9—N1—C1 | 110.0 (2) |
C10—C9—H9B | 109.5 | C9—N1—C17 | 109.4 (2) |
H9A—C9—H9B | 108.1 | C1—N1—C17 | 111.9 (2) |
N5—C10—N6 | 112.7 (3) | C9—N1—Ca1 | 110.18 (16) |
N5—C10—C9 | 124.1 (2) | C1—N1—Ca1 | 104.11 (17) |
N6—C10—C9 | 123.0 (2) | C17—N1—Ca1 | 111.23 (16) |
C16—C11—N5 | 109.7 (2) | C27—N2—C19 | 109.9 (2) |
C16—C11—C12 | 119.7 (3) | C27—N2—C18 | 109.4 (2) |
N5—C11—C12 | 130.6 (3) | C19—N2—C18 | 111.4 (2) |
C13—C12—C11 | 117.7 (3) | C27—N2—Ca1 | 108.73 (16) |
C13—C12—H12 | 121.2 | C19—N2—Ca1 | 106.49 (17) |
C11—C12—H12 | 121.2 | C18—N2—Ca1 | 110.85 (17) |
C12—C13—C14 | 122.1 (3) | C2—N3—C3 | 105.2 (2) |
C12—C13—H13 | 119.0 | C2—N3—Ca1 | 112.57 (19) |
C14—C13—H13 | 119.0 | C3—N3—Ca1 | 141.8 (2) |
C15—C14—C13 | 120.7 (3) | C2—N4—C8 | 108.3 (3) |
C15—C14—H14 | 119.7 | C2—N4—H4A | 125.8 |
C13—C14—H14 | 119.7 | C8—N4—H4A | 125.8 |
C16—C15—C14 | 117.5 (3) | C10—N5—C11 | 104.9 (2) |
C16—C15—H15 | 121.2 | C10—N5—Ca1 | 117.35 (18) |
C14—C15—H15 | 121.2 | C11—N5—Ca1 | 137.37 (18) |
C15—C16—C11 | 122.3 (3) | C10—N6—C16 | 107.8 (2) |
C15—C16—N6 | 132.8 (3) | C10—N6—H6A | 126.1 |
C11—C16—N6 | 104.9 (2) | C16—N6—H6A | 126.1 |
C18—C17—N1 | 113.1 (2) | C20—N7—C21 | 105.6 (2) |
C18—C17—H17A | 109.0 | C20—N7—Ca1 | 114.01 (18) |
N1—C17—H17A | 109.0 | C21—N7—Ca1 | 140.40 (19) |
C18—C17—H17B | 109.0 | C20—N8—C26 | 107.9 (2) |
N1—C17—H17B | 109.0 | C20—N8—H8 | 126.0 |
H17A—C17—H17B | 107.8 | C26—N8—H8 | 126.0 |
N2—C18—C17 | 113.5 (2) | C28—N9—C29 | 104.5 (2) |
N2—C18—H18A | 108.9 | C28—N9—Ca1 | 117.15 (19) |
C17—C18—H18A | 108.9 | C29—N9—Ca1 | 137.61 (18) |
N2—C18—H18B | 108.9 | C28—N10—C34 | 107.7 (2) |
C17—C18—H18B | 108.9 | C28—N10—H10 | 126.2 |
H18A—C18—H18B | 107.7 | C34—N10—H10 | 126.2 |
N2—C19—C20 | 109.2 (2) | O3—N11—O2 | 122.4 (2) |
N2—C19—H19A | 109.8 | O3—N11—O1 | 120.5 (2) |
C20—C19—H19A | 109.8 | O2—N11—O1 | 117.1 (2) |
N2—C19—H19B | 109.8 | N11—O1—Ca1 | 101.47 (15) |
C20—C19—H19B | 109.8 | N11—O2—Ca1 | 92.01 (15) |
H19A—C19—H19B | 108.3 | O5—N12—O6 | 122.0 (7) |
N7—C20—N8 | 112.7 (3) | O5—N12—O4 | 121.1 (7) |
N7—C20—C19 | 124.4 (3) | O6—N12—O4 | 116.8 (8) |
N8—C20—C19 | 122.8 (3) | C35—O7—H7A | 109.5 |
C22—C21—N7 | 131.8 (3) | C36—O8—H8A | 109.5 |
C22—C21—C26 | 119.4 (3) | C37—O9—H9 | 109.5 |
N7—C21—C26 | 108.8 (3) | O4'—N12'—O6' | 118.1 (10) |
C23—C22—C21 | 119.1 (3) | O4'—N12'—O5' | 117.4 (10) |
C23—C22—H22 | 120.4 | O6'—N12'—O5' | 116.7 (9) |
N1—C1—C2—N3 | 32.3 (4) | C1—C2—N3—Ca1 | 6.9 (4) |
N1—C1—C2—N4 | −146.5 (3) | C8—C3—N3—C2 | 0.4 (4) |
N3—C3—C4—C5 | −179.8 (4) | C4—C3—N3—C2 | 178.9 (4) |
C8—C3—C4—C5 | −1.5 (6) | C8—C3—N3—Ca1 | 172.0 (3) |
C3—C4—C5—C6 | 1.4 (7) | C4—C3—N3—Ca1 | −9.6 (6) |
C4—C5—C6—C7 | −0.6 (9) | O1—Ca1—N3—C2 | −165.3 (2) |
C5—C6—C7—C8 | −0.1 (10) | N9—Ca1—N3—C2 | 69.7 (2) |
C6—C7—C8—N4 | −179.7 (5) | N5—Ca1—N3—C2 | −87.1 (2) |
C6—C7—C8—C3 | 0.1 (9) | O2—Ca1—N3—C2 | 145.3 (2) |
N3—C3—C8—N4 | −0.8 (4) | N1—Ca1—N3—C2 | −24.65 (19) |
C4—C3—C8—N4 | −179.4 (3) | N2—Ca1—N3—C2 | 13.1 (2) |
N3—C3—C8—C7 | 179.4 (4) | O1—Ca1—N3—C3 | 23.5 (3) |
C4—C3—C8—C7 | 0.7 (7) | N9—Ca1—N3—C3 | −101.5 (3) |
N1—C9—C10—N5 | 26.2 (4) | N5—Ca1—N3—C3 | 101.7 (3) |
N1—C9—C10—N6 | −159.9 (3) | O2—Ca1—N3—C3 | −25.9 (3) |
C16—C11—C12—C13 | 0.6 (4) | N1—Ca1—N3—C3 | 164.2 (3) |
N5—C11—C12—C13 | 177.2 (3) | N2—Ca1—N3—C3 | −158.1 (3) |
C11—C12—C13—C14 | 0.2 (5) | N3—C2—N4—C8 | −0.6 (4) |
C12—C13—C14—C15 | −0.1 (5) | C1—C2—N4—C8 | 178.3 (3) |
C13—C14—C15—C16 | −0.9 (5) | C7—C8—N4—C2 | −179.3 (5) |
C14—C15—C16—C11 | 1.8 (4) | C3—C8—N4—C2 | 0.8 (4) |
C14—C15—C16—N6 | −177.8 (3) | N6—C10—N5—C11 | −0.2 (3) |
N5—C11—C16—C15 | −178.9 (3) | C9—C10—N5—C11 | 174.3 (3) |
C12—C11—C16—C15 | −1.7 (4) | N6—C10—N5—Ca1 | −174.70 (18) |
N5—C11—C16—N6 | 0.7 (3) | C9—C10—N5—Ca1 | −0.2 (4) |
C12—C11—C16—N6 | 178.0 (3) | C16—C11—N5—C10 | −0.4 (3) |
N1—C17—C18—N2 | 57.6 (3) | C12—C11—N5—C10 | −177.2 (3) |
N2—C19—C20—N7 | 33.5 (4) | C16—C11—N5—Ca1 | 172.5 (2) |
N2—C19—C20—N8 | −144.3 (3) | C12—C11—N5—Ca1 | −4.4 (5) |
N7—C21—C22—C23 | −178.7 (3) | O1—Ca1—N5—C10 | 130.8 (2) |
C26—C21—C22—C23 | −0.1 (5) | N9—Ca1—N5—C10 | −38.7 (3) |
C21—C22—C23—C24 | 0.7 (6) | N3—Ca1—N5—C10 | 48.0 (2) |
C22—C23—C24—C25 | −0.4 (7) | N7—Ca1—N5—C10 | −141.6 (2) |
C23—C24—C25—C26 | −0.5 (7) | O2—Ca1—N5—C10 | 138.70 (19) |
C24—C25—C26—N8 | 178.7 (4) | N1—Ca1—N5—C10 | −14.1 (2) |
C24—C25—C26—C21 | 1.1 (6) | N2—Ca1—N5—C10 | −76.8 (2) |
C22—C21—C26—C25 | −0.8 (5) | O1—Ca1—N5—C11 | −41.4 (3) |
N7—C21—C26—C25 | 178.1 (3) | N9—Ca1—N5—C11 | 149.1 (2) |
C22—C21—C26—N8 | −179.0 (3) | N3—Ca1—N5—C11 | −124.2 (3) |
N7—C21—C26—N8 | 0.0 (3) | N7—Ca1—N5—C11 | 46.2 (3) |
N2—C27—C28—N9 | 25.6 (4) | O2—Ca1—N5—C11 | −33.5 (3) |
N2—C27—C28—N10 | −156.4 (3) | N1—Ca1—N5—C11 | 173.7 (3) |
C34—C29—C30—C31 | 1.1 (5) | N2—Ca1—N5—C11 | 111.0 (3) |
N9—C29—C30—C31 | −179.7 (3) | N5—C10—N6—C16 | 0.6 (3) |
C29—C30—C31—C32 | 0.5 (6) | C9—C10—N6—C16 | −173.9 (3) |
C30—C31—C32—C33 | −1.5 (6) | C15—C16—N6—C10 | 178.8 (3) |
C31—C32—C33—C34 | 0.7 (6) | C11—C16—N6—C10 | −0.8 (3) |
C32—C33—C34—C29 | 0.9 (5) | N8—C20—N7—C21 | −1.9 (3) |
C32—C33—C34—N10 | 179.9 (3) | C19—C20—N7—C21 | −179.9 (3) |
C30—C29—C34—C33 | −1.9 (5) | N8—C20—N7—Ca1 | 179.92 (19) |
N9—C29—C34—C33 | 178.8 (3) | C19—C20—N7—Ca1 | 1.9 (3) |
C30—C29—C34—N10 | 178.9 (3) | C22—C21—N7—C20 | 179.9 (3) |
N9—C29—C34—N10 | −0.5 (3) | C26—C21—N7—C20 | 1.1 (3) |
C10—C9—N1—C1 | −149.5 (3) | C22—C21—N7—Ca1 | −2.7 (5) |
C10—C9—N1—C17 | 87.3 (3) | C26—C21—N7—Ca1 | 178.5 (2) |
C10—C9—N1—Ca1 | −35.3 (3) | O1—Ca1—N7—C20 | 158.32 (19) |
C2—C1—N1—C9 | 68.8 (3) | N9—Ca1—N7—C20 | −77.8 (2) |
C2—C1—N1—C17 | −169.4 (2) | N5—Ca1—N7—C20 | 79.3 (2) |
C2—C1—N1—Ca1 | −49.2 (3) | O2—Ca1—N7—C20 | −152.1 (2) |
C18—C17—N1—C9 | −162.2 (2) | N1—Ca1—N7—C20 | 21.1 (2) |
C18—C17—N1—C1 | 75.7 (3) | N2—Ca1—N7—C20 | −20.38 (18) |
C18—C17—N1—Ca1 | −40.2 (3) | O1—Ca1—N7—C21 | −18.9 (3) |
O1—Ca1—N1—C9 | −22.1 (2) | N9—Ca1—N7—C21 | 104.9 (3) |
N9—Ca1—N1—C9 | −162.98 (19) | N5—Ca1—N7—C21 | −98.0 (3) |
N5—Ca1—N1—C9 | 26.43 (18) | O2—Ca1—N7—C21 | 30.6 (3) |
N3—Ca1—N1—C9 | −79.05 (19) | N1—Ca1—N7—C21 | −156.2 (3) |
N7—Ca1—N1—C9 | 93.51 (19) | N2—Ca1—N7—C21 | 162.4 (3) |
O2—Ca1—N1—C9 | −101.5 (2) | N7—C20—N8—C26 | 1.9 (3) |
N2—Ca1—N1—C9 | 134.2 (2) | C19—C20—N8—C26 | −180.0 (3) |
O1—Ca1—N1—C1 | 95.72 (18) | C25—C26—N8—C20 | −178.9 (4) |
N9—Ca1—N1—C1 | −45.13 (18) | C21—C26—N8—C20 | −1.1 (3) |
N5—Ca1—N1—C1 | 144.28 (19) | N10—C28—N9—C29 | −0.3 (3) |
N3—Ca1—N1—C1 | 38.81 (17) | C27—C28—N9—C29 | 177.8 (3) |
N7—Ca1—N1—C1 | −148.63 (17) | N10—C28—N9—Ca1 | −172.16 (19) |
O2—Ca1—N1—C1 | 16.4 (3) | C27—C28—N9—Ca1 | 6.0 (4) |
N2—Ca1—N1—C1 | −107.96 (18) | C34—C29—N9—C28 | 0.5 (3) |
O1—Ca1—N1—C17 | −143.63 (17) | C30—C29—N9—C28 | −178.7 (3) |
N9—Ca1—N1—C17 | 75.53 (18) | C34—C29—N9—Ca1 | 169.7 (2) |
N5—Ca1—N1—C17 | −95.06 (19) | C30—C29—N9—Ca1 | −9.6 (5) |
N3—Ca1—N1—C17 | 159.5 (2) | O1—Ca1—N9—C28 | 130.0 (2) |
N7—Ca1—N1—C17 | −28.0 (2) | N5—Ca1—N9—C28 | −62.4 (3) |
O2—Ca1—N1—C17 | 137.05 (19) | N3—Ca1—N9—C28 | −150.9 (2) |
N2—Ca1—N1—C17 | 12.70 (17) | N7—Ca1—N9—C28 | 37.2 (2) |
C28—C27—N2—C19 | −156.1 (2) | O2—Ca1—N9—C28 | 119.7 (2) |
C28—C27—N2—C18 | 81.3 (3) | N1—Ca1—N9—C28 | −84.9 (2) |
C28—C27—N2—Ca1 | −39.9 (3) | N2—Ca1—N9—C28 | −20.3 (2) |
C20—C19—N2—C27 | 70.5 (3) | O1—Ca1—N9—C29 | −38.3 (3) |
C20—C19—N2—C18 | −168.0 (2) | N5—Ca1—N9—C29 | 129.4 (3) |
C20—C19—N2—Ca1 | −47.1 (3) | N3—Ca1—N9—C29 | 40.9 (3) |
C17—C18—N2—C27 | −162.4 (2) | N7—Ca1—N9—C29 | −131.0 (3) |
C17—C18—N2—C19 | 75.9 (3) | O2—Ca1—N9—C29 | −48.5 (3) |
C17—C18—N2—Ca1 | −42.5 (3) | N1—Ca1—N9—C29 | 106.8 (3) |
O1—Ca1—N2—C27 | −85.5 (2) | N2—Ca1—N9—C29 | 171.5 (3) |
N9—Ca1—N2—C27 | 32.01 (17) | N9—C28—N10—C34 | 0.0 (3) |
N5—Ca1—N2—C27 | −163.35 (17) | C27—C28—N10—C34 | −178.1 (3) |
N3—Ca1—N2—C27 | 97.79 (18) | C33—C34—N10—C28 | −178.9 (3) |
N7—Ca1—N2—C27 | −82.70 (17) | C29—C34—N10—C28 | 0.3 (3) |
O2—Ca1—N2—C27 | −17.5 (2) | O3—N11—O1—Ca1 | −178.7 (2) |
N1—Ca1—N2—C27 | 135.01 (18) | O2—N11—O1—Ca1 | −0.3 (2) |
O1—Ca1—N2—C19 | 32.9 (2) | N9—Ca1—O1—N11 | −12.96 (18) |
N9—Ca1—N2—C19 | 150.38 (19) | N5—Ca1—O1—N11 | 171.96 (16) |
N5—Ca1—N2—C19 | −44.97 (17) | N3—Ca1—O1—N11 | −92.96 (16) |
N3—Ca1—N2—C19 | −143.84 (17) | N7—Ca1—O1—N11 | 87.23 (16) |
N7—Ca1—N2—C19 | 35.67 (17) | O2—Ca1—O1—N11 | 0.18 (13) |
O2—Ca1—N2—C19 | 100.90 (17) | N1—Ca1—O1—N11 | −143.45 (14) |
N1—Ca1—N2—C19 | −106.62 (18) | N2—Ca1—O1—N11 | 89.8 (2) |
O1—Ca1—N2—C18 | 154.23 (18) | O3—N11—O2—Ca1 | 178.6 (2) |
N9—Ca1—N2—C18 | −88.26 (18) | O1—N11—O2—Ca1 | 0.3 (2) |
N5—Ca1—N2—C18 | 76.38 (18) | O1—Ca1—O2—N11 | −0.18 (13) |
N3—Ca1—N2—C18 | −22.5 (2) | N9—Ca1—O2—N11 | 168.59 (16) |
N7—Ca1—N2—C18 | 157.03 (19) | N5—Ca1—O2—N11 | −10.37 (18) |
O2—Ca1—N2—C18 | −137.75 (17) | N3—Ca1—O2—N11 | 82.99 (15) |
N1—Ca1—N2—C18 | 14.73 (17) | N7—Ca1—O2—N11 | −89.40 (15) |
N4—C2—N3—C3 | 0.1 (4) | N1—Ca1—O2—N11 | 103.43 (19) |
C1—C2—N3—C3 | −178.8 (3) | N2—Ca1—O2—N11 | −145.63 (14) |
N4—C2—N3—Ca1 | −174.3 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4A···O5i | 0.86 | 2.46 | 3.208 (8) | 145 |
N4—H4A···O6i | 0.86 | 2.09 | 2.888 (10) | 154 |
N6—H6A···O2ii | 0.86 | 2.26 | 3.099 (3) | 165 |
N6—H6A···O3ii | 0.86 | 2.45 | 3.118 (3) | 135 |
N10—H10···O1iii | 0.86 | 1.94 | 2.789 (3) | 172 |
O7—H7A···O4iv | 0.82 | 2.39 | 3.109 (11) | 147 |
N8—H8···O4 | 0.86 | 1.92 | 2.730 (7) | 157 |
O8—H8A···O9 | 0.82 | 1.86 | 2.655 (6) | 164 |
O9—H9···O5 | 0.82 | 2.14 | 2.929 (9) | 160 |
C9—H9B···O7 | 0.97 | 2.39 | 3.274 (5) | 151 |
C17—H17A···O8 | 0.97 | 2.33 | 3.290 (5) | 168 |
C19—H19B···O8 | 0.97 | 2.45 | 3.378 (5) | 160 |
Symmetry codes: (i) −x+3/2, y−1/2, −z+3/2; (ii) x−1, y, z; (iii) x+1/2, −y+1/2, z+1/2; (iv) x−1/2, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | [Ca(NO3)(C34H32N10)]NO3·3CH4O |
Mr | 840.92 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 294 |
a, b, c (Å) | 9.5945 (4), 25.3531 (11), 17.8402 (7) |
β (°) | 105.599 (1) |
V (Å3) | 4179.8 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.22 |
Crystal size (mm) | 0.20 × 0.20 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2001) |
Tmin, Tmax | 0.948, 0.979 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 43547, 8189, 4825 |
Rint | 0.146 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.065, 0.171, 0.90 |
No. of reflections | 8189 |
No. of parameters | 575 |
No. of restraints | 23 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.47, −0.38 |
Computer programs: SMART (Bruker, 2001), SAINT-Plus (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
Ca1—O1 | 2.440 (2) | Ca1—N7 | 2.543 (2) |
Ca1—N9 | 2.470 (2) | Ca1—O2 | 2.641 (2) |
Ca1—N5 | 2.477 (2) | Ca1—N1 | 2.647 (2) |
Ca1—N3 | 2.521 (2) | Ca1—N2 | 2.649 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4A···O5i | 0.86 | 2.46 | 3.208 (8) | 145 |
N4—H4A···O6i | 0.86 | 2.09 | 2.888 (10) | 154 |
N6—H6A···O2ii | 0.86 | 2.26 | 3.099 (3) | 165 |
N6—H6A···O3ii | 0.86 | 2.45 | 3.118 (3) | 135 |
N10—H10···O1iii | 0.86 | 1.94 | 2.789 (3) | 172 |
O7—H7A···O4iv | 0.82 | 2.39 | 3.109 (11) | 147 |
N8—H8···O4 | 0.86 | 1.92 | 2.730 (7) | 157 |
O8—H8A···O9 | 0.82 | 1.86 | 2.655 (6) | 164 |
O9—H9···O5 | 0.82 | 2.14 | 2.929 (9) | 160 |
C9—H9B···O7 | 0.97 | 2.39 | 3.274 (5) | 151 |
C17—H17A···O8 | 0.97 | 2.33 | 3.290 (5) | 168 |
C19—H19B···O8 | 0.97 | 2.45 | 3.378 (5) | 160 |
Symmetry codes: (i) −x+3/2, y−1/2, −z+3/2; (ii) x−1, y, z; (iii) x+1/2, −y+1/2, z+1/2; (iv) x−1/2, −y+1/2, z−1/2. |
Acknowledgements
This work is supported by the NSFC (grant No. 20571028).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Benzimidazole containing ligands and their metal complexes have been reported (Chen et al., 2004; Liao et al., 2001; Pei et al., 2007). In continuation of our work on these types of ligands, we report here the crystal structure of the title compound, [Ca(EDTB)(NO3)]+.NO3-.3CH3OH (EDTB is N,N,N',N'-Tetrakis-[(2-benzimidazolyl)methyl] -1,2-ethanediamine).
The asymmetric unit consists of one [Ca(EDTB)(NO3)]+ cationic unit, one uncoordinated nitrate anion and three methanol solvent molecules (Fig. 1). The structure of the monocation shows an eight-coordinated geometry with CaII ion at the centre of a distorted dodecahedral environment (Table 1). The CaII ion is coordinated by four benzimidazole (bzim) N atoms (N3,N5,N7 and N9) and two amine N atoms (N1 and N2) from the EDTB ligand, and two O atoms (O1/O2) from the coordinated nitrate ion.
The coordination cations, uncoordinated nitrate anions and free methanol molecules are interlinked into a three-dimensional network by a combination of six N—H···O, two O—H···O and three C—H···O hydrogen bonds (Table 2 and Fig. 2).