organic compounds
N-(2,4-Dinitrophenyl)-N′-[nitro(phenyl)methylene]hydrazine
aDepartment of Chemistry and Chemical Engineering, Baoji College of Arts and Sciences, Baoji 721007, People's Republic of China
*Correspondence e-mail: chunlanyuan@126.com
The title compound, C13H9N5O6, contains three nitro groups. It is prepared by the reaction of benzaldehyde 2,4-dinitrophenylhydrazone with nitric oxide at ambient temperature. The imine group is nearly coplanar with the (2,4-dinitrophenyl)hydrazine unit. The second benzene ring and the third nitro group are twisted away from this plane, with dihedral angles of 48.5 (3) and 15.2 (3)°, respectively. Weak intramolecular N—H⋯O interactions are observed.
Related literature
For related literature regarding NO, see: Garthwaite et al. (1989); Murad (1999). For arylhydrazones, see: Chan et al. (2001); Försterling & Barnes (2001); Paschalidis et al. (2000). For the structure of benzaldehyde 2,4-dinitrophenylhydrazone, see Shan et al. (2003).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: XSCANS (Siemens, 1996); cell XSCANS; data reduction: SHELXTL (Sheldrick, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536808036179/ez2141sup1.cif
contains datablocks I, New_Global_Publ_Block. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808036179/ez2141Isup2.hkl
A stock solution was prepared by dissolving 0.5 mol benzaldehyde -2,4-dinitrophenylhydrazine in 100 ml dry CH2Cl2. NO was produced by the reaction of 1 M H2SO4 solution trickled into an aqueous saturated NaNO2 solution through a funnel at a pre-determined speed, while stirring under an argon atmosphere. NO was carried by argon and purified by passing it through a series of scrubbing bottles containing 4M NaOH, distilled water and CaCl2 in turn. All the above bottles were under an argon atmosphere. The purified NO was bubbled through a previously degassed stirred stock solution at room temperature for an appropriate time. After the reaction was completed, as indicated by TLC, the reaction mixture was dried with anhydrous MgSO4, concentrated under vacuum and purified by
on silica–gel (200–300 mesh, ethyl acetate–hexane) yielding the pure title compound.Atom H2N was located in a difference Fourier map and refined isotropically, with the N—H distance restrained to 0.89 Å. Other H atoms were placed in idealized positions and constrained to ride on their parent atoms, with C—H distances of 0.93Å and with Uiso(H)= 1.2Ueq(C,N).
Data collection: XSCANS (Siemens, 1996); cell
XSCANS (Siemens, 1996); data reduction: SHELXTL (Sheldrick, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C13H9N5O6 | Dx = 1.590 Mg m−3 |
Mr = 331.25 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pbca | Cell parameters from 26 reflections |
a = 6.9790 (1) Å | θ = 3.4–12.5° |
b = 13.469 (2) Å | µ = 0.13 mm−1 |
c = 29.448 (8) Å | T = 289 K |
V = 2768.1 (9) Å3 | Prism, yellow |
Z = 8 | 0.52 × 0.48 × 0.22 mm |
F(000) = 1360 |
Siemens P4 diffractometer | Rint = 0.000 |
Radiation source: normal-focus sealed tube | θmax = 27.0°, θmin = 1.4° |
Graphite monochromator | h = 0→8 |
ω scans | k = 0→17 |
3591 measured reflections | l = 0→37 |
3018 independent reflections | 3 standard reflections every 97 reflections |
1537 reflections with I > 2σ(I) | intensity decay: 1.0% |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.039 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.059 | w = 1/[σ2(Fo2) + (0.0116P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.98 | (Δ/σ)max = 0.001 |
3018 reflections | Δρmax = 0.20 e Å−3 |
222 parameters | Δρmin = −0.14 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.00375 (18) |
C13H9N5O6 | V = 2768.1 (9) Å3 |
Mr = 331.25 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 6.9790 (1) Å | µ = 0.13 mm−1 |
b = 13.469 (2) Å | T = 289 K |
c = 29.448 (8) Å | 0.52 × 0.48 × 0.22 mm |
Siemens P4 diffractometer | Rint = 0.000 |
3591 measured reflections | 3 standard reflections every 97 reflections |
3018 independent reflections | intensity decay: 1.0% |
1537 reflections with I > 2σ(I) |
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.059 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.98 | Δρmax = 0.20 e Å−3 |
3018 reflections | Δρmin = −0.14 e Å−3 |
222 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.2792 (2) | 0.72703 (10) | 0.26225 (4) | 0.0655 (5) | |
O2 | 0.4128 (2) | 0.58358 (10) | 0.27056 (4) | 0.0696 (5) | |
O3 | 0.5250 (2) | 0.37214 (9) | 0.30832 (4) | 0.0587 (4) | |
O4 | 0.5513 (2) | 0.23410 (9) | 0.34501 (4) | 0.0668 (5) | |
O5 | 0.7770 (3) | 0.22039 (11) | 0.49622 (4) | 0.0826 (6) | |
O6 | 0.8082 (2) | 0.35414 (10) | 0.53534 (4) | 0.0827 (6) | |
N1 | 0.5194 (2) | 0.63895 (10) | 0.35787 (5) | 0.0411 (4) | |
N2 | 0.5362 (2) | 0.54088 (11) | 0.35121 (5) | 0.0423 (4) | |
N3 | 0.3764 (3) | 0.66797 (13) | 0.28337 (5) | 0.0489 (5) | |
N4 | 0.5574 (2) | 0.32486 (12) | 0.34320 (5) | 0.0463 (4) | |
N5 | 0.7673 (3) | 0.31066 (14) | 0.50021 (5) | 0.0599 (5) | |
C1 | 0.3799 (3) | 0.82777 (13) | 0.38520 (6) | 0.0409 (5) | |
H1 | 0.3459 | 0.7770 | 0.4050 | 0.049* | |
C2 | 0.3749 (3) | 0.92498 (14) | 0.39969 (6) | 0.0459 (5) | |
H2 | 0.3372 | 0.9394 | 0.4293 | 0.055* | |
C3 | 0.4251 (3) | 1.00085 (14) | 0.37089 (6) | 0.0490 (6) | |
H3 | 0.4223 | 1.0663 | 0.3810 | 0.059* | |
C4 | 0.4797 (3) | 0.97942 (14) | 0.32689 (6) | 0.0509 (6) | |
H4 | 0.5137 | 1.0307 | 0.3073 | 0.061* | |
C5 | 0.4842 (3) | 0.88204 (14) | 0.31166 (6) | 0.0449 (5) | |
H5 | 0.5195 | 0.8682 | 0.2819 | 0.054* | |
C6 | 0.4359 (3) | 0.80519 (13) | 0.34096 (6) | 0.0368 (5) | |
C7 | 0.4514 (3) | 0.69945 (13) | 0.32858 (6) | 0.0387 (5) | |
C8 | 0.5928 (3) | 0.48344 (13) | 0.38722 (6) | 0.0376 (5) | |
C9 | 0.6383 (3) | 0.52778 (13) | 0.42912 (6) | 0.0433 (5) | |
H9 | 0.6295 | 0.5964 | 0.4322 | 0.052* | |
C10 | 0.6953 (3) | 0.47186 (14) | 0.46549 (6) | 0.0453 (5) | |
H10 | 0.7271 | 0.5023 | 0.4928 | 0.054* | |
C11 | 0.7052 (3) | 0.37003 (14) | 0.46136 (6) | 0.0424 (5) | |
C12 | 0.6595 (3) | 0.32304 (13) | 0.42157 (6) | 0.0422 (5) | |
H12 | 0.6654 | 0.2542 | 0.4194 | 0.051* | |
C13 | 0.6048 (3) | 0.37961 (13) | 0.38483 (6) | 0.0376 (5) | |
H2N | 0.508 (2) | 0.5131 (11) | 0.3244 (5) | 0.045 (6)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0715 (11) | 0.0759 (10) | 0.0491 (9) | 0.0080 (10) | −0.0181 (8) | −0.0017 (8) |
O2 | 0.1089 (14) | 0.0566 (9) | 0.0433 (8) | 0.0080 (10) | −0.0062 (9) | −0.0146 (7) |
O3 | 0.0786 (12) | 0.0550 (9) | 0.0426 (8) | −0.0004 (9) | −0.0118 (8) | −0.0065 (7) |
O4 | 0.0932 (13) | 0.0360 (8) | 0.0711 (10) | 0.0018 (9) | −0.0160 (9) | −0.0131 (7) |
O5 | 0.1295 (16) | 0.0517 (10) | 0.0666 (10) | 0.0200 (12) | −0.0158 (11) | 0.0040 (9) |
O6 | 0.1324 (17) | 0.0721 (11) | 0.0437 (8) | 0.0087 (11) | −0.0200 (10) | −0.0044 (8) |
N1 | 0.0411 (11) | 0.0381 (9) | 0.0443 (9) | 0.0011 (9) | 0.0036 (8) | 0.0007 (8) |
N2 | 0.0489 (12) | 0.0416 (10) | 0.0365 (10) | −0.0013 (9) | −0.0036 (9) | −0.0058 (8) |
N3 | 0.0519 (13) | 0.0583 (12) | 0.0366 (10) | −0.0064 (11) | 0.0015 (9) | 0.0009 (9) |
N4 | 0.0429 (12) | 0.0467 (11) | 0.0492 (10) | 0.0015 (9) | −0.0012 (10) | −0.0086 (9) |
N5 | 0.0738 (15) | 0.0586 (13) | 0.0471 (11) | 0.0100 (12) | −0.0023 (11) | 0.0012 (10) |
C1 | 0.0408 (13) | 0.0460 (12) | 0.0358 (11) | 0.0008 (11) | −0.0005 (10) | 0.0064 (9) |
C2 | 0.0467 (13) | 0.0548 (13) | 0.0362 (11) | 0.0046 (12) | 0.0001 (10) | −0.0056 (10) |
C3 | 0.0483 (14) | 0.0410 (12) | 0.0577 (13) | 0.0047 (11) | −0.0079 (12) | −0.0038 (11) |
C4 | 0.0557 (15) | 0.0493 (13) | 0.0478 (12) | −0.0006 (12) | −0.0034 (12) | 0.0138 (10) |
C5 | 0.0477 (14) | 0.0556 (13) | 0.0315 (10) | 0.0000 (11) | −0.0016 (10) | 0.0050 (10) |
C6 | 0.0350 (12) | 0.0441 (11) | 0.0312 (10) | 0.0009 (10) | −0.0025 (9) | 0.0009 (9) |
C7 | 0.0397 (13) | 0.0449 (12) | 0.0314 (10) | −0.0033 (11) | 0.0025 (10) | −0.0002 (9) |
C8 | 0.0357 (12) | 0.0393 (11) | 0.0377 (11) | −0.0021 (10) | 0.0033 (10) | 0.0007 (9) |
C9 | 0.0518 (14) | 0.0379 (11) | 0.0404 (11) | 0.0013 (11) | 0.0042 (10) | −0.0063 (9) |
C10 | 0.0509 (15) | 0.0497 (12) | 0.0352 (11) | 0.0000 (12) | 0.0022 (10) | −0.0045 (10) |
C11 | 0.0462 (14) | 0.0458 (12) | 0.0352 (10) | 0.0029 (12) | 0.0016 (10) | 0.0022 (10) |
C12 | 0.0402 (12) | 0.0377 (11) | 0.0488 (12) | 0.0020 (10) | 0.0046 (10) | −0.0015 (10) |
C13 | 0.0362 (12) | 0.0398 (11) | 0.0367 (10) | −0.0014 (10) | 0.0006 (10) | −0.0080 (9) |
O1—N3 | 1.2163 (17) | C2—H2 | 0.9300 |
O2—N3 | 1.2244 (17) | C3—C4 | 1.381 (2) |
O3—N4 | 1.2296 (17) | C3—H3 | 0.9300 |
O4—N4 | 1.2244 (17) | C4—C5 | 1.386 (2) |
O5—N5 | 1.2233 (17) | C4—H4 | 0.9300 |
O6—N5 | 1.2227 (18) | C5—C6 | 1.389 (2) |
N1—C7 | 1.2779 (19) | C5—H5 | 0.9300 |
N1—N2 | 1.3405 (18) | C6—C7 | 1.474 (2) |
N2—C8 | 1.371 (2) | C8—C13 | 1.403 (2) |
N2—H2N | 0.894 (15) | C8—C9 | 1.407 (2) |
N3—C7 | 1.492 (2) | C9—C10 | 1.368 (2) |
N4—C13 | 1.468 (2) | C9—H9 | 0.9300 |
N5—C11 | 1.462 (2) | C10—C11 | 1.379 (2) |
C1—C2 | 1.378 (2) | C10—H10 | 0.9300 |
C1—C6 | 1.394 (2) | C11—C12 | 1.369 (2) |
C1—H1 | 0.9300 | C12—C13 | 1.377 (2) |
C2—C3 | 1.373 (2) | C12—H12 | 0.9300 |
C7—N1—N2 | 124.20 (15) | C4—C5—H5 | 120.0 |
N1—N2—C8 | 117.91 (15) | C6—C5—H5 | 120.0 |
N1—N2—H2N | 121.5 (10) | C5—C6—C1 | 119.08 (16) |
C8—N2—H2N | 120.6 (10) | C5—C6—C7 | 123.26 (16) |
O1—N3—O2 | 124.43 (17) | C1—C6—C7 | 117.56 (16) |
O1—N3—C7 | 117.78 (16) | N1—C7—C6 | 118.45 (16) |
O2—N3—C7 | 117.76 (17) | N1—C7—N3 | 123.46 (16) |
O4—N4—O3 | 123.17 (16) | C6—C7—N3 | 117.99 (16) |
O4—N4—C13 | 118.22 (16) | N2—C8—C13 | 122.75 (17) |
O3—N4—C13 | 118.61 (15) | N2—C8—C9 | 120.25 (16) |
O6—N5—O5 | 122.99 (18) | C13—C8—C9 | 116.98 (17) |
O6—N5—C11 | 118.00 (17) | C10—C9—C8 | 121.21 (17) |
O5—N5—C11 | 119.01 (17) | C10—C9—H9 | 119.4 |
C2—C1—C6 | 120.27 (17) | C8—C9—H9 | 119.4 |
C2—C1—H1 | 119.9 | C9—C10—C11 | 119.55 (17) |
C6—C1—H1 | 119.9 | C9—C10—H10 | 120.2 |
C3—C2—C1 | 120.63 (17) | C11—C10—H10 | 120.2 |
C3—C2—H2 | 119.7 | C12—C11—C10 | 121.58 (18) |
C1—C2—H2 | 119.7 | C12—C11—N5 | 119.07 (17) |
C2—C3—C4 | 119.61 (17) | C10—C11—N5 | 119.35 (17) |
C2—C3—H3 | 120.2 | C11—C12—C13 | 118.75 (17) |
C4—C3—H3 | 120.2 | C11—C12—H12 | 120.6 |
C3—C4—C5 | 120.49 (18) | C13—C12—H12 | 120.6 |
C3—C4—H4 | 119.8 | C12—C13—C8 | 121.91 (17) |
C5—C4—H4 | 119.8 | C12—C13—N4 | 116.14 (16) |
C4—C5—C6 | 119.90 (17) | C8—C13—N4 | 121.95 (17) |
C7—N1—N2—C8 | −173.30 (18) | N2—C8—C9—C10 | −179.95 (17) |
C6—C1—C2—C3 | −0.1 (3) | C13—C8—C9—C10 | 1.3 (3) |
C1—C2—C3—C4 | 0.5 (3) | C8—C9—C10—C11 | −1.2 (3) |
C2—C3—C4—C5 | 0.0 (3) | C9—C10—C11—C12 | 0.1 (3) |
C3—C4—C5—C6 | −0.8 (3) | C9—C10—C11—N5 | 179.60 (17) |
C4—C5—C6—C1 | 1.2 (3) | O6—N5—C11—C12 | 179.67 (19) |
C4—C5—C6—C7 | −175.08 (19) | O5—N5—C11—C12 | 0.0 (3) |
C2—C1—C6—C5 | −0.7 (3) | O6—N5—C11—C10 | 0.2 (3) |
C2—C1—C6—C7 | 175.76 (18) | O5—N5—C11—C10 | −179.5 (2) |
N2—N1—C7—C6 | 178.19 (17) | C10—C11—C12—C13 | 0.8 (3) |
N2—N1—C7—N3 | 1.8 (3) | N5—C11—C12—C13 | −178.71 (17) |
C5—C6—C7—N1 | 137.61 (19) | C11—C12—C13—C8 | −0.6 (3) |
C1—C6—C7—N1 | −38.7 (3) | C11—C12—C13—N4 | −179.89 (16) |
C5—C6—C7—N3 | −45.8 (3) | N2—C8—C13—C12 | −179.11 (17) |
C1—C6—C7—N3 | 137.86 (16) | C9—C8—C13—C12 | −0.4 (3) |
O1—N3—C7—N1 | 164.76 (18) | N2—C8—C13—N4 | 0.1 (3) |
O2—N3—C7—N1 | −13.5 (3) | C9—C8—C13—N4 | 178.85 (16) |
O1—N3—C7—C6 | −11.6 (3) | O4—N4—C13—C12 | 7.0 (3) |
O2—N3—C7—C6 | 170.13 (18) | O3—N4—C13—C12 | −173.35 (17) |
N1—N2—C8—C13 | 176.35 (17) | O4—N4—C13—C8 | −172.31 (18) |
N1—N2—C8—C9 | −2.3 (3) | O3—N4—C13—C8 | 7.4 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O2 | 0.894 (15) | 1.966 (15) | 2.591 (2) | 125.7 (13) |
Experimental details
Crystal data | |
Chemical formula | C13H9N5O6 |
Mr | 331.25 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 289 |
a, b, c (Å) | 6.9790 (1), 13.469 (2), 29.448 (8) |
V (Å3) | 2768.1 (9) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.13 |
Crystal size (mm) | 0.52 × 0.48 × 0.22 |
Data collection | |
Diffractometer | Siemens P4 diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3591, 3018, 1537 |
Rint | 0.000 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.059, 0.98 |
No. of reflections | 3018 |
No. of parameters | 222 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.20, −0.14 |
Computer programs: XSCANS (Siemens, 1996), SHELXTL (Sheldrick, 2008), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O2 | 0.894 (15) | 1.966 (15) | 2.591 (2) | 125.7 (13) |
Acknowledgements
I am grateful for financial support from Foster Industrial Projects (grant No. 06JC25) of Shaanxi Province and the main project (grant No. 04JS37) of the Key Laboratory of Shaanxi Province, People's Republic of China.
References
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Nitric oxide (NO) has been found recently to play an important role in chemistry, biology and medicine (Garthwaite et al., 1989; Murad, 1999). In recent years, arylhydrazones have been utilized for the analysis of carbonyl compounds (Chan et al., 2001). Some arylhydrazones and their nitration products were found to have pharmacological properties (Försterling & Barnes, 2001; Paschalidis et al., 2000). Here we report the reaction of NO with an arylhydrazone, where the title compound, (I), was obtained by the reaction of NO with benzaldehyde-2,4-dinitrophenylhydrazone.
The structure of (I) (Fig.1), shows that this reaction resulted in the addition of a third NO2 group, which is attached to the carbon atom C7, with an O1—N3—C7—C6 torsion angle of -11.6 (3)°. The imine double bond in benzaldehyde 2,4-dinitrophenylhydrazone was preserved, as indicated by the N1═C7 distance [1.2779 (19) Å] being similar to that of 1.275 (2)Å in the original compound (Shan et al., 2003). The other two nitro groups are co-planar with the benzene ring that they are attached to, with O4—N4—C12—C13 and O5—N5—C11—C12 torsion angles of 7.0 (3) and 0.0 (3)° respectively. There is a weak intramolecular N2—H(2 N)···O2 interaction.