organic compounds
(Z)-Ethyl 3-(4-chlorophenyl)-2-cyano-3-(2,6-difluorobenzamido)acrylate
aDepartment of Chemistry and Environmental Engineering, Hubei Normal University, Huangshi 435002, People's Republic of China, and bSchool of Mathematics and Physics, Huangshi Institute of Tecnology, Huangshi 435003, People's Republic of China
*Correspondence e-mail: zhangdehua200@163.com
The title compound, C19H13ClF2N2O3, was prepared by the reaction of (Z)-ethyl 3-amino-3-(4-chlorophenyl)-2-cyanoacrylate and 2,6-difluorobenzoyl chloride. The dihedral angle between the chlorobenzene and fluorobenzene rings is 37.0 (1)°. The ethyl group is disordered over two positions [occupancies = 0.52 (2):0.48 (2)]. In addition to intramolecular N—H⋯O and N—H⋯F hydrogen bonds, the crystal packing shows the molecules to be connected by intermolecular C—H⋯O and C—H⋯N hydrogen bonds.
Related literature
The title compound is useful as an inhibitor of Pyricularia oryzae, Rhizoctonia solani, Botrytis cinerea and Gibberella zeae, see: Heller et al. (2004); Creagh & Hubbell (1992); Ibers & Hamilton (1964).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: SMART (Bruker, 1998); cell SAINT (Bruker, 1999); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536808034818/fl2223sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808034818/fl2223Isup2.hkl
To a solution of (Z)-ethyl 3-amino-3-(4-chlorophenyl)-2-cyanoacrylate (1.25 g,0.0050 mol) in CH2Cl2(18 ml), 2,6-difluorobenzoyl chloride (2.65 g,0.015 mol) was added. Subsequently, Et3N(1.52 g,0.015 mol) waa dropped into the solution under stirring. Then, the reaction mixture was heated to reflux and stirred for 4 h and then cooled to room temperature. The reaction solution was filtered off and some white solid was separated. The organic phase was washed with water and then dried over Na2SO4. After removal of the solvent, a brown dope was obtained. After
using ethylacetate/light petroleum (1:6) as the Small single crystals were grown from a solution of ethyl acetate/petroleum ether(3:1) after 45 days,at room temperature.Methyl H atoms were placed in calculated positions with C—H=0.96 Å and the torsion angle was refined to fit the electron density, with UUiso(H)=1.5UUeq(C). Other H atoms were placed in calculated positions with C—H =0.96 Å(methylene) and 0.93 Å(aromatic C—H), and refined in riding mode, with Uiso(H)=1.2Ueq(C). In the absence of significant
Friedel pairs were merged.Data collection: SMART (Bruker, 1998); cell
SMART (Bruker, 1998); data reduction: SAINT (Bruker, 1999); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C19H13ClF2N2O3 | Z = 2 |
Mr = 390.76 | F(000) = 400 |
Triclinic, P1 | Dx = 1.411 Mg m−3 |
a = 8.919 (5) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 9.7560 (6) Å | Cell parameters from 2672 reflections |
c = 11.2717 (7) Å | θ = 2.4–26.8° |
α = 91.971 (1)° | µ = 0.25 mm−1 |
β = 110.094 (1)° | T = 298 K |
γ = 91.449 (1)° | Block, colorless |
V = 919.9 (5) Å3 | 0.23 × 0.20 × 0.10 mm |
Bruker SMART CCD area-detector diffractometer | 2524 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.053 |
Graphite monochromator | θmax = 26.0°, θmin = 1.9° |
ϕ and ω scans | h = −10→9 |
7196 measured reflections | k = −12→12 |
3556 independent reflections | l = −10→13 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.052 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.154 | H-atom parameters constrained |
S = 1.10 | w = 1/[σ2(Fo2) + (0.0794P)2 + 0.0184P] where P = (Fo2 + 2Fc2)/3 |
3556 reflections | (Δ/σ)max < 0.001 |
265 parameters | Δρmax = 0.22 e Å−3 |
6 restraints | Δρmin = −0.31 e Å−3 |
C19H13ClF2N2O3 | γ = 91.449 (1)° |
Mr = 390.76 | V = 919.9 (5) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.919 (5) Å | Mo Kα radiation |
b = 9.7560 (6) Å | µ = 0.25 mm−1 |
c = 11.2717 (7) Å | T = 298 K |
α = 91.971 (1)° | 0.23 × 0.20 × 0.10 mm |
β = 110.094 (1)° |
Bruker SMART CCD area-detector diffractometer | 2524 reflections with I > 2σ(I) |
7196 measured reflections | Rint = 0.053 |
3556 independent reflections |
R[F2 > 2σ(F2)] = 0.052 | 6 restraints |
wR(F2) = 0.154 | H-atom parameters constrained |
S = 1.10 | Δρmax = 0.22 e Å−3 |
3556 reflections | Δρmin = −0.31 e Å−3 |
265 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.7937 (2) | 0.8595 (2) | 0.98955 (19) | 0.0535 (5) | |
C2 | 0.9102 (3) | 0.7653 (3) | 1.0005 (2) | 0.0732 (7) | |
C3 | 1.0531 (3) | 0.7682 (3) | 1.0992 (3) | 0.0838 (8) | |
H3 | 1.1291 | 0.7036 | 1.1024 | 0.101* | |
C4 | 1.0803 (3) | 0.8678 (3) | 1.1917 (3) | 0.0803 (8) | |
H4 | 1.1756 | 0.8699 | 1.2601 | 0.096* | |
C5 | 0.9711 (3) | 0.9653 (3) | 1.1869 (2) | 0.0751 (7) | |
H5 | 0.9911 | 1.0336 | 1.2506 | 0.090* | |
C6 | 0.8309 (3) | 0.9595 (2) | 1.0850 (2) | 0.0595 (6) | |
C7 | 0.6359 (3) | 0.8440 (2) | 0.8831 (2) | 0.0559 (5) | |
C8 | 0.4458 (2) | 0.97457 (19) | 0.71787 (19) | 0.0488 (5) | |
C9 | 0.3884 (2) | 0.85359 (19) | 0.62766 (19) | 0.0502 (5) | |
C10 | 0.2296 (3) | 0.8088 (2) | 0.5863 (2) | 0.0622 (6) | |
H10 | 0.1586 | 0.8521 | 0.6180 | 0.075* | |
C11 | 0.1759 (3) | 0.7012 (2) | 0.4989 (2) | 0.0750 (8) | |
H11 | 0.0695 | 0.6703 | 0.4725 | 0.090* | |
C12 | 0.2800 (4) | 0.6397 (2) | 0.4511 (2) | 0.0769 (8) | |
C13 | 0.4383 (3) | 0.6827 (2) | 0.4905 (2) | 0.0755 (7) | |
H13 | 0.5082 | 0.6400 | 0.4573 | 0.091* | |
C14 | 0.4923 (3) | 0.7894 (2) | 0.5793 (2) | 0.0621 (6) | |
H14 | 0.5994 | 0.8184 | 0.6069 | 0.074* | |
C15 | 0.3749 (2) | 1.09761 (19) | 0.6912 (2) | 0.0513 (5) | |
C16 | 0.2483 (2) | 1.1126 (2) | 0.5730 (2) | 0.0560 (5) | |
C17 | 0.4278 (3) | 1.2223 (2) | 0.7746 (2) | 0.0620 (6) | |
C18 | 0.3811 (12) | 1.4663 (7) | 0.7837 (10) | 0.068 (2) | 0.523 (18) |
H18A | 0.3563 | 1.5287 | 0.7150 | 0.081* | 0.523 (18) |
H18B | 0.4946 | 1.4746 | 0.8316 | 0.081* | 0.523 (18) |
C19 | 0.2853 (15) | 1.4949 (11) | 0.8666 (11) | 0.092 (3) | 0.523 (18) |
H19A | 0.1736 | 1.4875 | 0.8169 | 0.138* | 0.523 (18) |
H19B | 0.3120 | 1.5860 | 0.9044 | 0.138* | 0.523 (18) |
H19C | 0.3087 | 1.4296 | 0.9317 | 0.138* | 0.523 (18) |
H18C | 0.3968 | 1.4029 | 0.9188 | 0.105* | 0.477 (18) |
H18D | 0.4638 | 1.4940 | 0.8343 | 0.105* | 0.477 (18) |
H19D | 0.1927 | 1.5423 | 0.7192 | 0.136* | 0.477 (18) |
H19E | 0.2613 | 1.6103 | 0.8561 | 0.136* | 0.477 (18) |
H19F | 0.1498 | 1.4776 | 0.8294 | 0.136* | 0.477 (18) |
Cl1 | 0.21456 (12) | 0.50444 (8) | 0.33944 (8) | 0.1331 (5) | |
F1 | 0.72205 (17) | 1.05606 (16) | 1.07956 (13) | 0.0850 (5) | |
F2 | 0.8855 (2) | 0.66854 (19) | 0.90845 (19) | 0.1238 (7) | |
N1 | 0.57876 (19) | 0.96329 (16) | 0.82386 (16) | 0.0544 (5) | |
H1 | 0.6319 | 1.0382 | 0.8567 | 0.065* | |
N2 | 0.1517 (2) | 1.1285 (2) | 0.4780 (2) | 0.0741 (6) | |
O1 | 0.5673 (2) | 0.73410 (15) | 0.85157 (17) | 0.0825 (6) | |
O2 | 0.5482 (2) | 1.23045 (16) | 0.86745 (17) | 0.0837 (6) | |
O3 | 0.3324 (2) | 1.32363 (15) | 0.73535 (19) | 0.0887 (6) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0522 (12) | 0.0567 (11) | 0.0446 (11) | −0.0027 (9) | 0.0076 (9) | 0.0076 (9) |
C2 | 0.0721 (16) | 0.0698 (14) | 0.0661 (16) | 0.0128 (12) | 0.0083 (13) | 0.0047 (12) |
C3 | 0.0652 (16) | 0.0906 (18) | 0.082 (2) | 0.0167 (13) | 0.0062 (15) | 0.0179 (16) |
C4 | 0.0527 (14) | 0.111 (2) | 0.0633 (16) | −0.0062 (14) | 0.0010 (12) | 0.0252 (15) |
C5 | 0.0707 (16) | 0.0961 (18) | 0.0465 (14) | −0.0138 (14) | 0.0067 (12) | −0.0015 (12) |
C6 | 0.0531 (13) | 0.0744 (14) | 0.0479 (12) | −0.0006 (10) | 0.0138 (10) | 0.0029 (10) |
C7 | 0.0562 (12) | 0.0551 (11) | 0.0467 (12) | −0.0040 (9) | 0.0056 (10) | 0.0024 (9) |
C8 | 0.0412 (10) | 0.0534 (10) | 0.0477 (12) | −0.0037 (8) | 0.0106 (9) | −0.0004 (9) |
C9 | 0.0500 (11) | 0.0491 (10) | 0.0445 (11) | 0.0017 (8) | 0.0076 (9) | 0.0003 (8) |
C10 | 0.0521 (12) | 0.0533 (11) | 0.0711 (15) | 0.0009 (9) | 0.0098 (11) | −0.0098 (10) |
C11 | 0.0645 (15) | 0.0569 (13) | 0.0773 (17) | 0.0016 (11) | −0.0080 (13) | −0.0112 (12) |
C12 | 0.0947 (19) | 0.0522 (12) | 0.0568 (15) | 0.0208 (12) | −0.0091 (13) | −0.0072 (11) |
C13 | 0.095 (2) | 0.0717 (15) | 0.0563 (15) | 0.0297 (14) | 0.0200 (14) | −0.0033 (12) |
C14 | 0.0616 (14) | 0.0673 (13) | 0.0572 (14) | 0.0130 (11) | 0.0197 (11) | 0.0023 (11) |
C15 | 0.0438 (11) | 0.0514 (11) | 0.0498 (12) | −0.0033 (8) | 0.0056 (9) | −0.0014 (9) |
C16 | 0.0464 (12) | 0.0516 (11) | 0.0612 (14) | 0.0009 (9) | 0.0076 (11) | −0.0018 (10) |
C17 | 0.0554 (13) | 0.0512 (11) | 0.0671 (15) | −0.0036 (10) | 0.0063 (12) | −0.0033 (10) |
C18 | 0.084 (4) | 0.037 (3) | 0.067 (5) | −0.004 (3) | 0.007 (4) | 0.001 (3) |
C19 | 0.102 (8) | 0.082 (6) | 0.082 (6) | −0.018 (5) | 0.022 (5) | −0.025 (5) |
Cl1 | 0.1606 (9) | 0.0804 (5) | 0.0965 (6) | 0.0416 (5) | −0.0328 (6) | −0.0442 (4) |
F1 | 0.0830 (10) | 0.0996 (10) | 0.0646 (9) | 0.0167 (8) | 0.0164 (8) | −0.0169 (8) |
F2 | 0.1283 (15) | 0.1036 (12) | 0.1083 (14) | 0.0450 (11) | 0.0014 (11) | −0.0327 (11) |
N1 | 0.0465 (10) | 0.0488 (9) | 0.0534 (11) | −0.0040 (7) | −0.0005 (8) | −0.0004 (8) |
N2 | 0.0581 (12) | 0.0760 (13) | 0.0698 (14) | 0.0017 (10) | −0.0014 (11) | 0.0026 (10) |
O1 | 0.0875 (12) | 0.0556 (9) | 0.0744 (12) | −0.0176 (8) | −0.0097 (9) | 0.0096 (8) |
O2 | 0.0777 (11) | 0.0612 (9) | 0.0783 (12) | −0.0010 (8) | −0.0145 (10) | −0.0155 (8) |
O3 | 0.0693 (11) | 0.0497 (9) | 0.1138 (15) | 0.0055 (7) | −0.0093 (10) | −0.0193 (9) |
C1—C6 | 1.372 (3) | C11—C12 | 1.365 (4) |
C1—C2 | 1.382 (3) | C11—H11 | 0.9300 |
C1—C7 | 1.504 (3) | C12—C13 | 1.376 (4) |
C2—F2 | 1.335 (3) | C12—Cl1 | 1.734 (2) |
C2—C3 | 1.373 (3) | C13—C14 | 1.374 (3) |
C3—C4 | 1.355 (4) | C13—H13 | 0.9300 |
C3—H3 | 0.9300 | C14—H14 | 0.9300 |
C4—C5 | 1.368 (4) | C15—C16 | 1.435 (3) |
C4—H4 | 0.9300 | C15—C17 | 1.474 (3) |
C5—C6 | 1.375 (3) | C16—N2 | 1.139 (3) |
C5—H5 | 0.9300 | C17—O2 | 1.214 (3) |
C6—F1 | 1.358 (3) | C17—O3 | 1.308 (3) |
C7—O1 | 1.200 (2) | C18—O3 | 1.475 (6) |
C7—N1 | 1.382 (3) | C18—C19 | 1.491 (8) |
C8—C15 | 1.365 (3) | C18—H18A | 0.9700 |
C8—N1 | 1.374 (2) | C18—H18B | 0.9700 |
C8—C9 | 1.489 (3) | C19—H19A | 0.9600 |
C9—C14 | 1.379 (3) | C19—H19B | 0.9600 |
C9—C10 | 1.384 (3) | C19—H19C | 0.9600 |
C10—C11 | 1.372 (3) | N1—H1 | 0.8600 |
C10—H10 | 0.9300 | ||
C6—C1—C2 | 115.1 (2) | C12—C11—H11 | 120.3 |
C6—C1—C7 | 124.45 (19) | C10—C11—H11 | 120.3 |
C2—C1—C7 | 120.34 (19) | C11—C12—C13 | 121.0 (2) |
F2—C2—C3 | 117.8 (2) | C11—C12—Cl1 | 120.3 (2) |
F2—C2—C1 | 118.6 (2) | C13—C12—Cl1 | 118.7 (2) |
C3—C2—C1 | 123.6 (2) | C14—C13—C12 | 119.5 (2) |
C4—C3—C2 | 118.2 (3) | C14—C13—H13 | 120.3 |
C4—C3—H3 | 120.9 | C12—C13—H13 | 120.3 |
C2—C3—H3 | 120.9 | C13—C14—C9 | 120.3 (2) |
C3—C4—C5 | 121.6 (2) | C13—C14—H14 | 119.9 |
C3—C4—H4 | 119.2 | C9—C14—H14 | 119.9 |
C5—C4—H4 | 119.2 | C8—C15—C16 | 119.88 (17) |
C4—C5—C6 | 118.1 (2) | C8—C15—C17 | 123.52 (18) |
C4—C5—H5 | 121.0 | C16—C15—C17 | 116.48 (17) |
C6—C5—H5 | 121.0 | N2—C16—C15 | 177.2 (2) |
F1—C6—C1 | 118.17 (18) | O2—C17—O3 | 124.01 (19) |
F1—C6—C5 | 118.3 (2) | O2—C17—C15 | 123.6 (2) |
C1—C6—C5 | 123.5 (2) | O3—C17—C15 | 112.34 (18) |
O1—C7—N1 | 123.20 (19) | O3—C18—C19 | 103.8 (6) |
O1—C7—C1 | 121.33 (19) | O3—C18—H18A | 111.0 |
N1—C7—C1 | 115.46 (16) | C19—C18—H18A | 111.0 |
C15—C8—N1 | 120.33 (16) | O3—C18—H18B | 111.0 |
C15—C8—C9 | 120.59 (17) | C19—C18—H18B | 111.0 |
N1—C8—C9 | 118.91 (17) | H18A—C18—H18B | 109.0 |
C14—C9—C10 | 119.25 (19) | C8—N1—C7 | 126.72 (16) |
C14—C9—C8 | 119.85 (19) | C8—N1—H1 | 116.6 |
C10—C9—C8 | 120.82 (18) | C7—N1—H1 | 116.6 |
C11—C10—C9 | 120.6 (2) | C17—O3—C18 | 121.6 (5) |
C11—C10—H10 | 119.7 | C17—O3—C18' | 110.6 (4) |
C9—C10—H10 | 119.7 | C18—O3—C18' | 26.1 (5) |
C12—C11—C10 | 119.4 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O2 | 0.86 | 2.05 | 2.674 (2) | 129 |
N1—H1···F1 | 0.86 | 2.36 | 2.827 (2) | 115 |
C18—H18B···O1i | 0.97 | 2.58 | 2.990 (7) | 106 |
C10—H10···N2ii | 0.93 | 2.62 | 3.302 (3) | 131 |
C5—H5···N2iii | 0.93 | 2.59 | 3.432 (3) | 150 |
Symmetry codes: (i) x, y+1, z; (ii) −x, −y+2, −z+1; (iii) x+1, y, z+1. |
Experimental details
Crystal data | |
Chemical formula | C19H13ClF2N2O3 |
Mr | 390.76 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 298 |
a, b, c (Å) | 8.919 (5), 9.7560 (6), 11.2717 (7) |
α, β, γ (°) | 91.971 (1), 110.094 (1), 91.449 (1) |
V (Å3) | 919.9 (5) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.25 |
Crystal size (mm) | 0.23 × 0.20 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7196, 3556, 2524 |
Rint | 0.053 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.052, 0.154, 1.10 |
No. of reflections | 3556 |
No. of parameters | 265 |
No. of restraints | 6 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.22, −0.31 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 1999), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O2 | 0.86 | 2.05 | 2.674 (2) | 128.6 |
N1—H1···F1 | 0.86 | 2.36 | 2.827 (2) | 114.7 |
C18—H18B···O1i | 0.97 | 2.58 | 2.990 (7) | 105.6 |
C10—H10···N2ii | 0.93 | 2.62 | 3.302 (3) | 130.9 |
C5—H5···N2iii | 0.93 | 2.59 | 3.432 (3) | 150.2 |
Symmetry codes: (i) x, y+1, z; (ii) −x, −y+2, −z+1; (iii) x+1, y, z+1. |
References
Bruker (1998). SMART. Bruker AXS Inc., Madison,Wisconsin, USA. Google Scholar
Bruker (1999). SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Creagh, D. C. & Hubbell, J. H. (1992). International Tables for Crystallography, Vol. C, pp. 200–206. Dordrecht: Kluwer. Google Scholar
Heller, D., Drexler, H. J., You, J. & Zhang, S. L. (2004). WO Patent 011 414. Google Scholar
Ibers, J. A. & Hamilton, W. C. (1964). Acta Cryst. 17, 781–782. CrossRef IUCr Journals Web of Science Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
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Recently, 2-cyanoacrylates have been in widespread used as agrochemicals because of their unique mechanism of action and good environmental profiles. The title compound is useful as an inhibitor of Pyricularia oryzae, Rhizoctonia solani, Botrytis cinerea and Gibberella zeae (Heller et al., 2004; Creagh & Hubbell, 1992; Ibers & Hamilton, 1964).
In the title compound(Fig.1),all bond lengths and angles are unexceptional.The planar chlorobenzene ring is approximately perpendicular to the fluorobenzene ring with a dihedral angle of 37.0 (1)°. The ethyl group is disordered over two positions occupancies (0.52 (2):0.48 (2)).The molecular conformation is stabilized by C—H···O and N—H···O hydrogen bonds (Table 1). The crystal packing is governed by additional N—H···O and N—H···F Interactions (Fig. 2).