metal-organic compounds
Poly[μ-aqua-[μ-1,1′-(butane-1,4-diyl)diimidazole]bis(μ4-naphthalene-1,4-dicarboxylato)dicadmium(II)]
aCollege of Chemistry and Chemical Engineering, Qiqihar University, Qiqihar 161006, Heilongjiang Province, People's Republic of China
*Correspondence e-mail: zhangwenzhi1968@yahoo.com.cn
In the title compound, [Cd2(C12H6O4)2(C10H14N4)(H2O)]n, the around each CdII ion is a distorted CdNO5 octahedron. The water O atom has 2 and the complete 1,1′-(butane-1,4-diyl)diimidazole (L) ligand is generated by inversion. The naphthalene-1,4-dicarboxylate and L ligands bridge the metal centres, forming a three-dimensional framework, which is consolidated by O—H⋯O hydrogen bonds.
Related literature
For background to metal–organic frameworks, see Ma et al. (2003); Yang et al. (2008).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1998); cell SAINT (Bruker, 1998); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536808037525/hb2837sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808037525/hb2837Isup2.hkl
A mixture of 1,4-H2ndc (0.5 mmol), L (0.5 mmol), NaOH (1 mmol) and CdCl2.2.5H2O (0.5 mmol) was suspended in 14 ml of deionized water and sealed in a 20-ml Teflon-lined autoclave. Upon heating at 413 K for three days, the autoclave was slowly cooled to room temperature. The resulting colourless blocks of (I) were collected, washed with deionized water and dried.
The C–bound H atoms were positioned geometrically (C—H = 0.93–0.96 Å) and refined as riding, with Uiso(H) = 1.2Ueq(carrier). The water H atom was located in a difference Fourier map and refined freely.
Data collection: SMART (Bruker, 1998); cell
SAINT (Bruker, 1998); data reduction: SAINT (Bruker, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).[Cd2(C12H6O4)2(C10H14N4)(H2O)] | F(000) = 1712 |
Mr = 861.40 | Dx = 1.808 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 3102 reflections |
a = 18.773 (2) Å | θ = 1.1–26.0° |
b = 14.9118 (19) Å | µ = 1.41 mm−1 |
c = 14.2298 (18) Å | T = 293 K |
β = 127.390 (1)° | Block, colorless |
V = 3165.0 (7) Å3 | 0.33 × 0.27 × 0.22 mm |
Z = 4 |
Bruker APEX CCD diffractometer | 3102 independent reflections |
Radiation source: fine-focus sealed tube | 2809 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
ω scans | θmax = 26.0°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −16→23 |
Tmin = 0.691, Tmax = 0.732 | k = −18→17 |
8715 measured reflections | l = −16→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.022 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.056 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0287P)2 + 3.5082P] where P = (Fo2 + 2Fc2)/3 |
3102 reflections | (Δ/σ)max = 0.001 |
226 parameters | Δρmax = 0.47 e Å−3 |
0 restraints | Δρmin = −0.30 e Å−3 |
[Cd2(C12H6O4)2(C10H14N4)(H2O)] | V = 3165.0 (7) Å3 |
Mr = 861.40 | Z = 4 |
Monoclinic, C2/c | Mo Kα radiation |
a = 18.773 (2) Å | µ = 1.41 mm−1 |
b = 14.9118 (19) Å | T = 293 K |
c = 14.2298 (18) Å | 0.33 × 0.27 × 0.22 mm |
β = 127.390 (1)° |
Bruker APEX CCD diffractometer | 3102 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | 2809 reflections with I > 2σ(I) |
Tmin = 0.691, Tmax = 0.732 | Rint = 0.018 |
8715 measured reflections |
R[F2 > 2σ(F2)] = 0.022 | 0 restraints |
wR(F2) = 0.056 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 0.47 e Å−3 |
3102 reflections | Δρmin = −0.30 e Å−3 |
226 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.37567 (16) | 0.35138 (16) | 0.1979 (2) | 0.0297 (5) | |
C2 | 0.30731 (16) | 0.28246 (16) | 0.1737 (2) | 0.0280 (5) | |
C3 | 0.21801 (17) | 0.30336 (18) | 0.0966 (2) | 0.0359 (6) | |
H3 | 0.2005 | 0.3550 | 0.0509 | 0.043* | |
C4 | 0.15233 (17) | 0.24857 (19) | 0.0850 (2) | 0.0374 (6) | |
H4 | 0.0922 | 0.2646 | 0.0328 | 0.045* | |
C5 | 0.17624 (16) | 0.17188 (17) | 0.1500 (2) | 0.0305 (5) | |
C6 | 0.10956 (17) | 0.12334 (17) | 0.1573 (2) | 0.0333 (6) | |
C7 | 0.26737 (17) | 0.14297 (16) | 0.2231 (2) | 0.0300 (5) | |
C8 | 0.33359 (16) | 0.19901 (16) | 0.2353 (2) | 0.0288 (5) | |
C9 | 0.42311 (18) | 0.16783 (19) | 0.3048 (2) | 0.0422 (6) | |
H9 | 0.4676 | 0.2031 | 0.3133 | 0.051* | |
C10 | 0.4447 (2) | 0.0865 (2) | 0.3594 (3) | 0.0579 (9) | |
H10 | 0.5038 | 0.0670 | 0.4048 | 0.069* | |
C11 | 0.3796 (3) | 0.0319 (2) | 0.3485 (3) | 0.0549 (9) | |
H11 | 0.3957 | −0.0234 | 0.3864 | 0.066* | |
C12 | 0.2933 (2) | 0.05926 (19) | 0.2830 (3) | 0.0432 (7) | |
H12 | 0.2505 | 0.0229 | 0.2771 | 0.052* | |
C13 | 0.26154 (18) | 0.5557 (2) | −0.0295 (3) | 0.0433 (7) | |
H13 | 0.2482 | 0.5072 | −0.0015 | 0.052* | |
C14 | 0.32799 (18) | 0.64237 (19) | −0.0731 (2) | 0.0404 (6) | |
H14 | 0.3701 | 0.6657 | −0.0810 | 0.048* | |
C15 | 0.2503 (2) | 0.6826 (2) | −0.1106 (3) | 0.0471 (7) | |
H15 | 0.2295 | 0.7378 | −0.1484 | 0.056* | |
C16 | 0.1209 (2) | 0.6416 (3) | −0.1088 (3) | 0.0654 (10) | |
H16A | 0.1215 | 0.6989 | −0.0761 | 0.078* | |
H16B | 0.1111 | 0.5954 | −0.0697 | 0.078* | |
C17 | 0.04549 (17) | 0.6405 (2) | −0.2362 (3) | 0.0479 (7) | |
H17A | 0.0508 | 0.5876 | −0.2712 | 0.057* | |
H17B | 0.0502 | 0.6926 | −0.2729 | 0.057* | |
N1 | 0.33508 (13) | 0.56210 (15) | −0.02170 (18) | 0.0332 (5) | |
N2 | 0.20866 (14) | 0.62697 (18) | −0.0825 (2) | 0.0440 (6) | |
O1 | 0.43795 (13) | 0.36693 (13) | 0.30491 (17) | 0.0455 (5) | |
O2 | 0.36314 (12) | 0.38808 (13) | 0.11038 (17) | 0.0438 (5) | |
O1W | 0.5000 | 0.55213 (17) | 0.2500 | 0.0267 (5) | |
O3 | 0.11724 (18) | 0.13705 (18) | 0.2487 (2) | 0.0756 (9) | |
O4 | 0.05171 (10) | 0.07264 (11) | 0.07468 (14) | 0.0285 (4) | |
Cd1 | 0.453957 (10) | 0.468475 (11) | 0.086231 (14) | 0.02277 (7) | |
HW11 | 0.5363 (19) | 0.581 (2) | 0.257 (3) | 0.047 (9)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0285 (13) | 0.0274 (13) | 0.0399 (14) | −0.0057 (10) | 0.0242 (12) | −0.0041 (10) |
C2 | 0.0297 (13) | 0.0301 (13) | 0.0297 (12) | −0.0090 (10) | 0.0210 (11) | −0.0043 (9) |
C3 | 0.0322 (14) | 0.0360 (14) | 0.0372 (14) | −0.0070 (11) | 0.0199 (12) | 0.0061 (11) |
C4 | 0.0224 (13) | 0.0495 (16) | 0.0335 (13) | −0.0073 (11) | 0.0135 (11) | 0.0031 (12) |
C5 | 0.0330 (14) | 0.0352 (14) | 0.0277 (12) | −0.0151 (11) | 0.0207 (11) | −0.0086 (10) |
C6 | 0.0349 (14) | 0.0362 (14) | 0.0367 (13) | −0.0151 (11) | 0.0258 (12) | −0.0083 (11) |
C7 | 0.0383 (14) | 0.0263 (12) | 0.0321 (12) | −0.0085 (10) | 0.0248 (12) | −0.0065 (9) |
C8 | 0.0326 (13) | 0.0286 (13) | 0.0275 (12) | −0.0062 (10) | 0.0194 (11) | −0.0049 (9) |
C9 | 0.0309 (14) | 0.0451 (16) | 0.0473 (16) | −0.0033 (12) | 0.0220 (13) | −0.0020 (13) |
C10 | 0.0466 (19) | 0.055 (2) | 0.059 (2) | 0.0159 (16) | 0.0252 (17) | 0.0103 (16) |
C11 | 0.071 (2) | 0.0382 (17) | 0.057 (2) | 0.0114 (15) | 0.0393 (19) | 0.0134 (14) |
C12 | 0.0588 (19) | 0.0316 (14) | 0.0473 (16) | −0.0070 (13) | 0.0363 (16) | −0.0002 (12) |
C13 | 0.0273 (14) | 0.0576 (18) | 0.0448 (16) | 0.0071 (13) | 0.0219 (13) | 0.0155 (14) |
C14 | 0.0337 (15) | 0.0472 (17) | 0.0424 (15) | 0.0055 (12) | 0.0242 (13) | 0.0125 (12) |
C15 | 0.0421 (17) | 0.0460 (17) | 0.0500 (17) | 0.0172 (13) | 0.0264 (14) | 0.0216 (13) |
C16 | 0.0298 (16) | 0.113 (3) | 0.0529 (19) | 0.0232 (18) | 0.0248 (15) | 0.010 (2) |
C17 | 0.0267 (15) | 0.0587 (19) | 0.0532 (18) | −0.0054 (13) | 0.0216 (14) | −0.0030 (14) |
N1 | 0.0226 (10) | 0.0413 (12) | 0.0333 (11) | 0.0050 (9) | 0.0157 (9) | 0.0085 (9) |
N2 | 0.0240 (11) | 0.0664 (17) | 0.0381 (12) | 0.0166 (11) | 0.0169 (10) | 0.0157 (11) |
O1 | 0.0446 (12) | 0.0513 (12) | 0.0427 (11) | −0.0287 (9) | 0.0276 (10) | −0.0154 (9) |
O2 | 0.0366 (11) | 0.0469 (12) | 0.0466 (11) | −0.0093 (8) | 0.0245 (9) | 0.0115 (9) |
O1W | 0.0269 (14) | 0.0260 (13) | 0.0350 (13) | 0.000 | 0.0227 (12) | 0.000 |
O3 | 0.0944 (19) | 0.103 (2) | 0.0678 (15) | −0.0748 (16) | 0.0690 (15) | −0.0539 (14) |
O4 | 0.0261 (9) | 0.0332 (9) | 0.0295 (8) | −0.0109 (7) | 0.0185 (7) | −0.0068 (7) |
Cd1 | 0.01994 (10) | 0.02484 (11) | 0.02462 (10) | 0.00131 (6) | 0.01409 (8) | 0.00274 (6) |
C1—O2 | 1.245 (3) | C13—H13 | 0.9300 |
C1—O1 | 1.256 (3) | C14—C15 | 1.351 (4) |
C1—C2 | 1.511 (3) | C14—N1 | 1.366 (3) |
C2—C3 | 1.370 (3) | C14—H14 | 0.9300 |
C2—C8 | 1.427 (3) | C15—N2 | 1.357 (4) |
C3—C4 | 1.403 (3) | C15—H15 | 0.9300 |
C3—H3 | 0.9300 | C16—N2 | 1.468 (3) |
C4—C5 | 1.364 (4) | C16—C17 | 1.474 (4) |
C4—H4 | 0.9300 | C16—H16A | 0.9700 |
C5—C7 | 1.426 (4) | C16—H16B | 0.9700 |
C5—C6 | 1.503 (3) | C17—C17i | 1.502 (5) |
C6—O3 | 1.236 (3) | C17—H17A | 0.9700 |
C6—O4 | 1.258 (3) | C17—H17B | 0.9700 |
C7—C8 | 1.418 (3) | O1—Cd1ii | 2.2344 (17) |
C7—C12 | 1.421 (4) | O1W—Cd1ii | 2.2995 (14) |
C8—C9 | 1.414 (4) | O1W—HW11 | 0.76 (3) |
C9—C10 | 1.363 (4) | O4—Cd1iii | 2.3096 (16) |
C9—H9 | 0.9300 | O4—Cd1iv | 2.4848 (15) |
C10—C11 | 1.396 (5) | Cd1—N1 | 2.264 (2) |
C10—H10 | 0.9300 | Cd1—O2 | 2.2746 (17) |
C11—C12 | 1.351 (5) | Cd1—O1ii | 2.2344 (17) |
C11—H11 | 0.9300 | Cd1—O4iii | 2.3096 (16) |
C12—H12 | 0.9300 | Cd1—O4v | 2.4847 (15) |
C13—N1 | 1.319 (3) | Cd1—O1W | 2.2995 (14) |
C13—N2 | 1.332 (4) | ||
O2—C1—O1 | 127.1 (2) | C14—C15—H15 | 126.6 |
O2—C1—C2 | 116.9 (2) | N2—C15—H15 | 126.6 |
O1—C1—C2 | 116.1 (2) | N2—C16—C17 | 113.7 (3) |
C3—C2—C8 | 119.3 (2) | N2—C16—H16A | 108.8 |
C3—C2—C1 | 119.0 (2) | C17—C16—H16A | 108.8 |
C8—C2—C1 | 121.6 (2) | N2—C16—H16B | 108.8 |
C2—C3—C4 | 121.5 (2) | C17—C16—H16B | 108.8 |
C2—C3—H3 | 119.3 | H16A—C16—H16B | 107.7 |
C4—C3—H3 | 119.3 | C16—C17—C17i | 114.3 (3) |
C5—C4—C3 | 120.3 (2) | C16—C17—H17A | 108.7 |
C5—C4—H4 | 119.8 | C17i—C17—H17A | 108.7 |
C3—C4—H4 | 119.8 | C16—C17—H17B | 108.7 |
C4—C5—C7 | 120.2 (2) | C17i—C17—H17B | 108.7 |
C4—C5—C6 | 120.4 (2) | H17A—C17—H17B | 107.6 |
C7—C5—C6 | 119.0 (2) | C13—N1—C14 | 105.2 (2) |
O3—C6—O4 | 124.4 (2) | C13—N1—Cd1 | 124.23 (18) |
O3—C6—C5 | 115.0 (2) | C14—N1—Cd1 | 129.70 (17) |
O4—C6—C5 | 120.5 (2) | C13—N2—C15 | 106.8 (2) |
C8—C7—C12 | 119.2 (2) | C13—N2—C16 | 126.7 (3) |
C8—C7—C5 | 119.0 (2) | C15—N2—C16 | 126.4 (3) |
C12—C7—C5 | 121.7 (2) | C1—O1—Cd1ii | 138.66 (17) |
C9—C8—C7 | 118.2 (2) | C1—O2—Cd1 | 132.78 (16) |
C9—C8—C2 | 122.5 (2) | Cd1—O1W—Cd1ii | 114.29 (11) |
C7—C8—C2 | 119.2 (2) | Cd1—O1W—HW11 | 101 (2) |
C10—C9—C8 | 120.5 (3) | Cd1ii—O1W—HW11 | 115 (2) |
C10—C9—H9 | 119.8 | C6—O4—Cd1iii | 125.42 (15) |
C8—C9—H9 | 119.8 | C6—O4—Cd1iv | 124.57 (15) |
C9—C10—C11 | 121.3 (3) | Cd1iii—O4—Cd1iv | 107.96 (6) |
C9—C10—H10 | 119.4 | O1ii—Cd1—N1 | 173.89 (7) |
C11—C10—H10 | 119.4 | O1ii—Cd1—O2 | 89.23 (7) |
C12—C11—C10 | 120.1 (3) | N1—Cd1—O2 | 84.66 (7) |
C12—C11—H11 | 119.9 | O1ii—Cd1—O1W | 92.34 (7) |
C10—C11—H11 | 119.9 | N1—Cd1—O1W | 87.83 (7) |
C11—C12—C7 | 120.7 (3) | O2—Cd1—O1W | 89.30 (6) |
C11—C12—H12 | 119.7 | O1ii—Cd1—O4iii | 89.03 (6) |
C7—C12—H12 | 119.7 | N1—Cd1—O4iii | 93.33 (7) |
N1—C13—N2 | 111.8 (3) | O2—Cd1—O4iii | 114.98 (7) |
N1—C13—H13 | 124.1 | O1W—Cd1—O4iii | 155.70 (5) |
N2—C13—H13 | 124.1 | O1ii—Cd1—O4v | 94.20 (7) |
C15—C14—N1 | 109.4 (2) | N1—Cd1—O4v | 91.89 (7) |
C15—C14—H14 | 125.3 | O2—Cd1—O4v | 172.29 (6) |
N1—C14—H14 | 125.3 | O1W—Cd1—O4v | 83.67 (5) |
C14—C15—N2 | 106.8 (2) | O4iii—Cd1—O4v | 72.04 (6) |
Symmetry codes: (i) −x, y, −z−1/2; (ii) −x+1, y, −z+1/2; (iii) −x+1/2, −y+1/2, −z; (iv) x−1/2, y−1/2, z; (v) x+1/2, y+1/2, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—HW11···O3v | 0.76 (3) | 1.80 (3) | 2.549 (2) | 169 (3) |
Symmetry code: (v) x+1/2, y+1/2, z. |
Experimental details
Crystal data | |
Chemical formula | [Cd2(C12H6O4)2(C10H14N4)(H2O)] |
Mr | 861.40 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 293 |
a, b, c (Å) | 18.773 (2), 14.9118 (19), 14.2298 (18) |
β (°) | 127.390 (1) |
V (Å3) | 3165.0 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.41 |
Crystal size (mm) | 0.33 × 0.27 × 0.22 |
Data collection | |
Diffractometer | Bruker APEX CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 1998) |
Tmin, Tmax | 0.691, 0.732 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8715, 3102, 2809 |
Rint | 0.018 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.022, 0.056, 1.07 |
No. of reflections | 3102 |
No. of parameters | 226 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.47, −0.30 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
Cd1—N1 | 2.264 (2) | Cd1—O4ii | 2.3096 (16) |
Cd1—O2 | 2.2746 (17) | Cd1—O4iii | 2.4847 (15) |
Cd1—O1i | 2.2344 (17) | Cd1—O1W | 2.2995 (14) |
Symmetry codes: (i) −x+1, y, −z+1/2; (ii) −x+1/2, −y+1/2, −z; (iii) x+1/2, y+1/2, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—HW11···O3iii | 0.76 (3) | 1.80 (3) | 2.549 (2) | 169 (3) |
Symmetry code: (iii) x+1/2, y+1/2, z. |
Acknowledgements
The work was supported by the Program for Young Academic Backbone in Heilongjiang Provincial University (grant No. 1152G053)
References
Bruker (1998). SMART, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Ma, J.-F., Yang, J., Zheng, G.-L., Li, L. & Liu, J.-F. (2003). Inorg. Chem. 42, 7531–7534. Web of Science CSD CrossRef PubMed CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Yang, J., Ma, J.-F., Batten, S. R. & Su, Z.-M. (2008). Chem. Commun. pp. 2233–2235. Web of Science CSD CrossRef Google Scholar
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Currently, metal-organic frameworks are of great interest because of their interesting structures and potential applications. Up to now, some interesting interpenetrated or entangled metal-organic networks with bis(imidazole)-containing ligands have been documented (Yang et al., 2008). However, flexible ligands such as 1,1'-(butane-1,4-diyl)diimidazole (L) has not been well explored to date (Ma et al., 2003). In this work, we selected naphthalene-1,4-dicarboxylic acid (1,4-H2ndc) and L as linkers in combination with a source of cadmium ions, generating a new coordination polymer, [Cd2(1,4-ndc)2(L)(H2O)], (I), which is reported here.
In compound (I) each CdII atom is six-coordinated by one N atom from one L ligand, and five O atoms from four carboxylate oxygen atoms and one water molecule in a distorted octohedral coordination sphere (Fig. 1, Table 1). The water molecule O atom has site symmetry 2 and the L ligand is situated across an inversion centre. The two neighbouring CdII atoms are bridged by the carboxylate and water molecule to form a dimer. The dimers are further linked by the backbone of 1,4-ndc and L ligands to form a three-dimensional framework (Fig. 2). An O—H···O hydrogen bond (Table 2) helps to consolidate the packing.