organic compounds
N2-[1-(2-Hydroxyphenyl)ethylidene]-N2′-(1H-indol-3-ylmethylene)carbonic dihydrazide
aDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia, and bDepartment of Molecular Medicine, Faculty of Medicine, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: hapipah@um.edu.my
In the H-indol-3-ylmethyleneamino)urea}, C18H17N5O2, the planar indole component is twisted at an angle of 63.7 (10)° with respect to the rest of the molecule. This compound is one of a series being studied for biological activity. The hydroxy groups are involved in both intramolecular (O—H⋯N) and intermolecular (N—H⋯O) hydrogen bonds.
of the title compound {alternative name: 1-[1-(2-hydroxyphenyl)ethylideneamino]-3-(1Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2008).
Supporting information
10.1107/S1600536808035757/hg2434sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808035757/hg2434Isup2.hkl
Indole-3-carboxaldehyde (0.30 g, 2.07 mmol), carbohydrazide (0.187 g, 2.07 mmol), and 2-Hydroxyacetophenone (0.24 ml, 2.07 mmol) were heated in acidified ethanol (20 ml) for 2 h. The solvent was removed and the product recrystallized from DMSO.
Hydrogen atoms were placed at calculated positions (C—H 0.95, N—H 0.88 and O—H 0.84 Å), with U(H) set to 1.2–1.5 times Ueq(C,N,O).
Data collection: APEX2 (Bruker, 2007); cell
APEX2 (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2008).Fig. 1. Thermal ellipsoid plot (Barbour, 2001) of C18H17N5O2 at 70% probability level. Hydrogen atoms are drawn as spheres of arbitrary radius |
C18H17N5O2 | F(000) = 704 |
Mr = 335.37 | Dx = 1.325 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 6889 reflections |
a = 7.0802 (8) Å | θ = 2.3–30.5° |
b = 9.5335 (11) Å | µ = 0.09 mm−1 |
c = 25.110 (3) Å | T = 100 K |
β = 97.295 (2)° | Irregular, colourless |
V = 1681.2 (3) Å3 | 0.42 × 0.42 × 0.16 mm |
Z = 4 |
Bruker APEXII CCD area-detector diffractometer | 4740 independent reflections |
Radiation source: fine-focus sealed tube | 4145 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.014 |
ω scans | θmax = 30.6°, θmin = 2.3° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −10→4 |
Tmin = 0.821, Tmax = 0.986 | k = −13→12 |
11912 measured reflections | l = −34→35 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.122 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0656P)2 + 0.7125P] where P = (Fo2 + 2Fc2)/3 |
4740 reflections | (Δ/σ)max < 0.001 |
228 parameters | Δρmax = 0.43 e Å−3 |
0 restraints | Δρmin = −0.32 e Å−3 |
C18H17N5O2 | V = 1681.2 (3) Å3 |
Mr = 335.37 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 7.0802 (8) Å | µ = 0.09 mm−1 |
b = 9.5335 (11) Å | T = 100 K |
c = 25.110 (3) Å | 0.42 × 0.42 × 0.16 mm |
β = 97.295 (2)° |
Bruker APEXII CCD area-detector diffractometer | 4740 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 4145 reflections with I > 2σ(I) |
Tmin = 0.821, Tmax = 0.986 | Rint = 0.014 |
11912 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.122 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.43 e Å−3 |
4740 reflections | Δρmin = −0.32 e Å−3 |
228 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N2 | 0.47231 (13) | 0.13948 (10) | 0.11232 (3) | 0.01593 (18) | |
O2 | 0.38944 (12) | 0.16315 (8) | −0.02799 (3) | 0.01958 (18) | |
O1 | 0.22435 (14) | 0.47449 (9) | −0.09575 (3) | 0.0246 (2) | |
H1A | 0.2598 | 0.4252 | −0.0686 | 0.037* | |
N5 | 0.28865 (13) | 0.41919 (9) | 0.00270 (3) | 0.01540 (18) | |
N3 | 0.45872 (14) | 0.09630 (10) | 0.05941 (4) | 0.01774 (19) | |
H3B | 0.4878 | 0.0099 | 0.0513 | 0.021* | |
C13 | 0.17966 (15) | 0.64221 (11) | −0.02541 (4) | 0.0159 (2) | |
N4 | 0.35380 (14) | 0.31965 (9) | 0.03933 (3) | 0.01631 (19) | |
H4B | 0.3663 | 0.3374 | 0.0740 | 0.020* | |
C11 | 0.25266 (15) | 0.54484 (11) | 0.01820 (4) | 0.0150 (2) | |
C10 | 0.39925 (15) | 0.19077 (11) | 0.02031 (4) | 0.0155 (2) | |
C9 | 0.57339 (15) | 0.06194 (11) | 0.14689 (4) | 0.0160 (2) | |
H9 | 0.6346 | −0.0193 | 0.1354 | 0.019* | |
C8 | 0.59385 (15) | 0.09842 (11) | 0.20307 (4) | 0.0153 (2) | |
N1 | 0.69458 (15) | 0.09189 (10) | 0.29159 (4) | 0.0203 (2) | |
H1B | 0.7590 | 0.0676 | 0.3225 | 0.024* | |
C12 | 0.28004 (18) | 0.59167 (13) | 0.07571 (5) | 0.0224 (2) | |
H12A | 0.1593 | 0.5833 | 0.0907 | 0.034* | |
H12B | 0.3223 | 0.6896 | 0.0777 | 0.034* | |
H12C | 0.3764 | 0.5326 | 0.0963 | 0.034* | |
C14 | 0.16631 (16) | 0.60243 (11) | −0.07989 (4) | 0.0180 (2) | |
C15 | 0.09241 (18) | 0.69504 (13) | −0.12025 (5) | 0.0237 (2) | |
H15 | 0.0813 | 0.6664 | −0.1568 | 0.028* | |
C7 | 0.71448 (17) | 0.03294 (12) | 0.24298 (4) | 0.0192 (2) | |
H7 | 0.7986 | −0.0418 | 0.2375 | 0.023* | |
C5 | 0.49227 (15) | 0.20425 (11) | 0.22913 (4) | 0.0147 (2) | |
C18 | 0.12097 (18) | 0.77799 (12) | −0.01393 (5) | 0.0240 (2) | |
H18 | 0.1294 | 0.8076 | 0.0224 | 0.029* | |
C3 | 0.48431 (17) | 0.27906 (12) | 0.32274 (5) | 0.0208 (2) | |
H3 | 0.5303 | 0.2721 | 0.3599 | 0.025* | |
C1 | 0.27606 (18) | 0.38481 (13) | 0.24917 (5) | 0.0255 (3) | |
H1 | 0.1791 | 0.4509 | 0.2376 | 0.031* | |
C4 | 0.55764 (16) | 0.19532 (11) | 0.28456 (4) | 0.0164 (2) | |
C2 | 0.34160 (18) | 0.37266 (13) | 0.30407 (5) | 0.0247 (2) | |
H2 | 0.2868 | 0.4299 | 0.3290 | 0.030* | |
C17 | 0.05073 (19) | 0.87046 (13) | −0.05440 (6) | 0.0283 (3) | |
H17 | 0.0134 | 0.9625 | −0.0457 | 0.034* | |
C6 | 0.35025 (16) | 0.30202 (12) | 0.21144 (5) | 0.0200 (2) | |
H6 | 0.3056 | 0.3114 | 0.1743 | 0.024* | |
C16 | 0.03524 (18) | 0.82812 (13) | −0.10749 (5) | 0.0264 (3) | |
H16 | −0.0148 | 0.8907 | −0.1352 | 0.032* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N2 | 0.0201 (4) | 0.0163 (4) | 0.0114 (4) | 0.0015 (3) | 0.0021 (3) | −0.0005 (3) |
O2 | 0.0286 (4) | 0.0170 (4) | 0.0127 (3) | 0.0047 (3) | 0.0009 (3) | −0.0006 (3) |
O1 | 0.0389 (5) | 0.0196 (4) | 0.0140 (4) | 0.0084 (4) | −0.0020 (3) | −0.0002 (3) |
N5 | 0.0172 (4) | 0.0140 (4) | 0.0148 (4) | 0.0021 (3) | 0.0012 (3) | 0.0020 (3) |
N3 | 0.0264 (5) | 0.0145 (4) | 0.0121 (4) | 0.0054 (3) | 0.0016 (3) | −0.0001 (3) |
C13 | 0.0141 (4) | 0.0142 (4) | 0.0192 (5) | 0.0006 (4) | 0.0015 (4) | 0.0011 (4) |
N4 | 0.0228 (5) | 0.0140 (4) | 0.0118 (4) | 0.0046 (3) | 0.0008 (3) | 0.0009 (3) |
C11 | 0.0144 (4) | 0.0146 (4) | 0.0162 (4) | 0.0004 (4) | 0.0027 (3) | −0.0004 (4) |
C10 | 0.0175 (5) | 0.0144 (4) | 0.0143 (4) | 0.0017 (4) | 0.0013 (4) | 0.0002 (3) |
C9 | 0.0180 (5) | 0.0149 (4) | 0.0153 (4) | 0.0021 (4) | 0.0033 (4) | 0.0004 (4) |
C8 | 0.0172 (5) | 0.0148 (4) | 0.0139 (4) | 0.0013 (4) | 0.0024 (4) | 0.0012 (3) |
N1 | 0.0262 (5) | 0.0209 (5) | 0.0128 (4) | 0.0031 (4) | −0.0008 (3) | 0.0018 (3) |
C12 | 0.0300 (6) | 0.0201 (5) | 0.0173 (5) | 0.0019 (4) | 0.0036 (4) | −0.0036 (4) |
C14 | 0.0173 (5) | 0.0162 (5) | 0.0197 (5) | 0.0010 (4) | −0.0007 (4) | 0.0018 (4) |
C15 | 0.0235 (6) | 0.0242 (6) | 0.0221 (5) | 0.0013 (4) | −0.0028 (4) | 0.0061 (4) |
C7 | 0.0232 (5) | 0.0187 (5) | 0.0157 (5) | 0.0044 (4) | 0.0016 (4) | 0.0015 (4) |
C5 | 0.0161 (5) | 0.0138 (4) | 0.0143 (4) | −0.0022 (4) | 0.0027 (3) | −0.0007 (3) |
C18 | 0.0265 (6) | 0.0172 (5) | 0.0281 (6) | 0.0045 (4) | 0.0033 (5) | −0.0003 (4) |
C3 | 0.0244 (6) | 0.0212 (5) | 0.0176 (5) | −0.0058 (4) | 0.0052 (4) | −0.0048 (4) |
C1 | 0.0210 (6) | 0.0239 (6) | 0.0310 (6) | 0.0058 (4) | 0.0013 (5) | −0.0083 (5) |
C4 | 0.0188 (5) | 0.0151 (5) | 0.0156 (5) | −0.0030 (4) | 0.0030 (4) | −0.0003 (4) |
C2 | 0.0240 (6) | 0.0244 (6) | 0.0269 (6) | −0.0022 (5) | 0.0076 (5) | −0.0108 (5) |
C17 | 0.0284 (6) | 0.0161 (5) | 0.0402 (7) | 0.0068 (4) | 0.0034 (5) | 0.0046 (5) |
C6 | 0.0189 (5) | 0.0199 (5) | 0.0208 (5) | 0.0031 (4) | 0.0002 (4) | −0.0029 (4) |
C16 | 0.0219 (6) | 0.0218 (6) | 0.0343 (6) | 0.0021 (4) | −0.0013 (5) | 0.0116 (5) |
N2—C9 | 1.2862 (14) | C12—H12A | 0.9800 |
N2—N3 | 1.3824 (12) | C12—H12B | 0.9800 |
O2—C10 | 1.2344 (13) | C12—H12C | 0.9800 |
O1—C14 | 1.3626 (13) | C14—C15 | 1.3949 (15) |
O1—H1A | 0.8400 | C15—C16 | 1.3816 (18) |
N5—C11 | 1.2948 (13) | C15—H15 | 0.9500 |
N5—N4 | 1.3608 (12) | C7—H7 | 0.9500 |
N3—C10 | 1.3591 (13) | C5—C6 | 1.4013 (15) |
N3—H3B | 0.8800 | C5—C4 | 1.4125 (14) |
C13—C18 | 1.4007 (15) | C18—C17 | 1.3887 (17) |
C13—C14 | 1.4111 (15) | C18—H18 | 0.9500 |
C13—C11 | 1.4779 (14) | C3—C2 | 1.3844 (18) |
N4—C10 | 1.3712 (13) | C3—C4 | 1.3973 (15) |
N4—H4B | 0.8800 | C3—H3 | 0.9500 |
C11—C12 | 1.5003 (15) | C1—C6 | 1.3866 (16) |
C9—C8 | 1.4424 (14) | C1—C2 | 1.4024 (18) |
C9—H9 | 0.9500 | C1—H1 | 0.9500 |
C8—C7 | 1.3807 (14) | C2—H2 | 0.9500 |
C8—C5 | 1.4431 (14) | C17—C16 | 1.384 (2) |
N1—C7 | 1.3672 (14) | C17—H17 | 0.9500 |
N1—C4 | 1.3784 (14) | C6—H6 | 0.9500 |
N1—H1B | 0.8800 | C16—H16 | 0.9500 |
C9—N2—N3 | 116.25 (9) | C15—C14—C13 | 120.46 (10) |
C14—O1—H1A | 109.5 | C16—C15—C14 | 120.45 (11) |
C11—N5—N4 | 120.31 (9) | C16—C15—H15 | 119.8 |
C10—N3—N2 | 118.31 (9) | C14—C15—H15 | 119.8 |
C10—N3—H3B | 120.8 | N1—C7—C8 | 109.75 (10) |
N2—N3—H3B | 120.8 | N1—C7—H7 | 125.1 |
C18—C13—C14 | 117.56 (10) | C8—C7—H7 | 125.1 |
C18—C13—C11 | 120.87 (10) | C6—C5—C4 | 118.98 (10) |
C14—C13—C11 | 121.57 (9) | C6—C5—C8 | 134.45 (10) |
N5—N4—C10 | 117.64 (9) | C4—C5—C8 | 106.55 (9) |
N5—N4—H4B | 121.2 | C17—C18—C13 | 121.61 (12) |
C10—N4—H4B | 121.2 | C17—C18—H18 | 119.2 |
N5—C11—C13 | 114.95 (9) | C13—C18—H18 | 119.2 |
N5—C11—C12 | 123.94 (10) | C2—C3—C4 | 117.05 (10) |
C13—C11—C12 | 121.10 (9) | C2—C3—H3 | 121.5 |
O2—C10—N3 | 122.82 (10) | C4—C3—H3 | 121.5 |
O2—C10—N4 | 123.15 (9) | C6—C1—C2 | 121.18 (11) |
N3—C10—N4 | 114.02 (9) | C6—C1—H1 | 119.4 |
N2—C9—C8 | 119.98 (10) | C2—C1—H1 | 119.4 |
N2—C9—H9 | 120.0 | N1—C4—C3 | 129.59 (10) |
C8—C9—H9 | 120.0 | N1—C4—C5 | 107.85 (9) |
C7—C8—C9 | 125.24 (10) | C3—C4—C5 | 122.54 (10) |
C7—C8—C5 | 106.56 (9) | C3—C2—C1 | 121.48 (11) |
C9—C8—C5 | 128.18 (9) | C3—C2—H2 | 119.3 |
C7—N1—C4 | 109.28 (9) | C1—C2—H2 | 119.3 |
C7—N1—H1B | 125.4 | C16—C17—C18 | 119.80 (11) |
C4—N1—H1B | 125.4 | C16—C17—H17 | 120.1 |
C11—C12—H12A | 109.5 | C18—C17—H17 | 120.1 |
C11—C12—H12B | 109.5 | C1—C6—C5 | 118.75 (11) |
H12A—C12—H12B | 109.5 | C1—C6—H6 | 120.6 |
C11—C12—H12C | 109.5 | C5—C6—H6 | 120.6 |
H12A—C12—H12C | 109.5 | C15—C16—C17 | 120.09 (11) |
H12B—C12—H12C | 109.5 | C15—C16—H16 | 120.0 |
O1—C14—C15 | 116.97 (10) | C17—C16—H16 | 120.0 |
O1—C14—C13 | 122.57 (9) | ||
C9—N2—N3—C10 | −162.57 (10) | C5—C8—C7—N1 | −0.35 (13) |
C11—N5—N4—C10 | −176.52 (10) | C7—C8—C5—C6 | −178.47 (12) |
N4—N5—C11—C13 | −179.00 (9) | C9—C8—C5—C6 | −0.3 (2) |
N4—N5—C11—C12 | 0.64 (16) | C7—C8—C5—C4 | −0.58 (12) |
C18—C13—C11—N5 | 174.99 (10) | C9—C8—C5—C4 | 177.62 (10) |
C14—C13—C11—N5 | −5.00 (15) | C14—C13—C18—C17 | 0.46 (18) |
C18—C13—C11—C12 | −4.66 (16) | C11—C13—C18—C17 | −179.52 (11) |
C14—C13—C11—C12 | 175.35 (10) | C7—N1—C4—C3 | 177.00 (11) |
N2—N3—C10—O2 | 177.29 (10) | C7—N1—C4—C5 | −1.54 (13) |
N2—N3—C10—N4 | −1.86 (15) | C2—C3—C4—N1 | −178.03 (11) |
N5—N4—C10—O2 | 2.37 (16) | C2—C3—C4—C5 | 0.33 (17) |
N5—N4—C10—N3 | −178.48 (9) | C6—C5—C4—N1 | 179.57 (10) |
N3—N2—C9—C8 | −179.42 (9) | C8—C5—C4—N1 | 1.29 (12) |
N2—C9—C8—C7 | −172.45 (11) | C6—C5—C4—C3 | 0.90 (16) |
N2—C9—C8—C5 | 9.66 (17) | C8—C5—C4—C3 | −177.38 (10) |
C18—C13—C14—O1 | 178.09 (11) | C4—C3—C2—C1 | −1.19 (18) |
C11—C13—C14—O1 | −1.93 (17) | C6—C1—C2—C3 | 0.8 (2) |
C18—C13—C14—C15 | −1.62 (16) | C13—C18—C17—C16 | 0.9 (2) |
C11—C13—C14—C15 | 178.37 (10) | C2—C1—C6—C5 | 0.44 (18) |
O1—C14—C15—C16 | −178.26 (11) | C4—C5—C6—C1 | −1.26 (16) |
C13—C14—C15—C16 | 1.46 (18) | C8—C5—C6—C1 | 176.42 (12) |
C4—N1—C7—C8 | 1.19 (13) | C14—C15—C16—C17 | −0.10 (19) |
C9—C8—C7—N1 | −178.62 (10) | C18—C17—C16—C15 | −1.1 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···N5 | 0.84 | 1.78 | 2.5121 (11) | 145 |
N3—H3B···O2i | 0.88 | 1.99 | 2.8481 (13) | 166 |
N1—H1B···O1ii | 0.88 | 2.14 | 2.8803 (13) | 142 |
Symmetry codes: (i) −x+1, −y, −z; (ii) x+1/2, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C18H17N5O2 |
Mr | 335.37 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 100 |
a, b, c (Å) | 7.0802 (8), 9.5335 (11), 25.110 (3) |
β (°) | 97.295 (2) |
V (Å3) | 1681.2 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.42 × 0.42 × 0.16 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.821, 0.986 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11912, 4740, 4145 |
Rint | 0.014 |
(sin θ/λ)max (Å−1) | 0.715 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.122, 1.03 |
No. of reflections | 4740 |
No. of parameters | 228 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.43, −0.32 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), X-SEED (Barbour, 2001), publCIF (Westrip, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···N5 | 0.84 | 1.78 | 2.5121 (11) | 145 |
N3—H3B···O2i | 0.88 | 1.99 | 2.8481 (13) | 166 |
N1—H1B···O1ii | 0.88 | 2.14 | 2.8803 (13) | 142 |
Symmetry codes: (i) −x+1, −y, −z; (ii) x+1/2, −y+1/2, z+1/2. |
Acknowledgements
The authors thank the University of Malaya for funding this study (Science Fund Grants 12–02-03–2031, 12–02-03–2051 and PJP FS350–2008 A).
References
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X-ray structures, of Schiff bases derived from condensation of indole-3-carboxaldehyde and 2-hydroxyacetophenone, have not been investigated. The title compound (Fig. 1) appears to be the first example with the planar indole component is twisted at an angle of 116.3 (10)° with respect to the rest of the molecule. However, compound bis(salicylidene)carbonohydrazide (Dan et al.1987), which was reported previously shows planarity for the whole molecule.