metal-organic compounds
catena-Poly[[[(dimethylmalonato-κ2O:O′)(perchlorato-κO)copper(II)]-μ-bis(3-pyridylmethyl)piperazinediium-κ2N1′:N4′] perchlorate dihydrate]
aLyman Briggs College, Department of Chemistry, Michigan State University, East Lansing, MI 48825 USA
*Correspondence e-mail: laduca@msu.edu
In the title compound, {[Cu(C5H6O4)(ClO4)(C16H22N4)]ClO4·2H2O}n, square-pyramidally coordinated Cu atoms with perchlorate and dimethylmalonate ligands are connected into cationic sinusoidal coordination polymer chains by doubly protonated bis(3-pyridylmethyl)piperazine (3-bpmp) ligands. The chains aggregate into pseudo-layers parallel to the (101) crystal planes by N—H⋯O hydrogen bonding. Unligated perchlorate anions and water molecules of crystallization provide additional hydrogen bonding between pseudo-layers.
Related literature
For copper carboxylate coordination polymers containing 3-bpmp, see: Johnston et al. (2008). For the synthesis of 3-bpmp, see: Pocic et al. (2005).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Crystal Maker (Palmer, 2007); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536808036490/lh2730sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808036490/lh2730Isup2.hkl
All chemicals were obtained commercially, except for 3-bpmp which was synthesized by a literature method (Pocic et al., 2005). Copper perchlorate hexahydrate (19 mg, 0.051 mmol) and dimethylmalonic acid (7 mg, 0.05 mmol) were dissolved in 3 ml water in a glass vial. A 1 ml
of a 1:1 water:ethanol solution was carefully layered onto the aqueous solution, followed by 3 ml of an ethanolic solution of 3-bpmp (27 mg, 0.10 mmol). Blue blocks of the title compound formed after 1 week.All H atoms bound to C atoms were placed in calculated positions, with C—H = 0.95 - 0.99 Å and refined in riding mode with Uiso = 1.2Ueq(C) or 1.5Ueq(C) for methyl C atoms. All H atoms bound to O atoms were found via Fourier difference map, restrained with O—H = 0.89 Å, and refined with Uiso=1.2Ueq(O). All H atoms bound to N atoms were found via Fourier difference map, restrained with N—H = 0.89 Å, and refined with Uiso=1.2Ueq(N).
Data collection: SMART (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Crystal Maker (Palmer, 2007); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. Coordination environment of the title compound, showing 50% probability ellipsoids and atom numbering scheme. Hydrogen atoms are not shown. Color codes: dark blue Cu, light blue N, red O, black C, green Cl and orange O atoms of water molecules. | |
Fig. 2. A single cationic [Cu(dimethylmalonate)(ClO4)(3-bpmpH2)]n chain in the title compound. | |
Fig. 3. A supramolecular [Cu(dimethylmalonate)(ClO4)(3-bpmpH2)]n layer in the title compound. Hydrogen bonding between protonated piperazinyl N atoms and unligated dimethylmalonate carboxylate O atoms is shown as dashed lines. | |
Fig. 4. Packing diagram illustrating the interaction of pseudolayers via hydrogen bonding involving the dimethylmalonate carboxylate O atoms, co-crystallized water molecules, and unligated perchlorate anions. |
[Cu(C5H6O4)(ClO4)(C16H22N4)]ClO4·2H2O | Z = 2 |
Mr = 698.95 | F(000) = 722 |
Triclinic, P1 | Dx = 1.653 Mg m−3 |
a = 9.6284 (15) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 10.5140 (16) Å | Cell parameters from 14378 reflections |
c = 14.061 (2) Å | θ = 1.5–28.3° |
α = 86.950 (2)° | µ = 1.04 mm−1 |
β = 82.634 (2)° | T = 173 K |
γ = 84.638 (2)° | Block, blue |
V = 1404.3 (4) Å3 | 0.40 × 0.30 × 0.15 mm |
Bruker SMART 1K diffractometer | 6309 independent reflections |
Radiation source: fine-focus sealed tube | 4904 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.035 |
ω scans | θmax = 28.3°, θmin = 1.5° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −12→12 |
Tmin = 0.680, Tmax = 0.859 | k = −13→13 |
14378 measured reflections | l = −18→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.099 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0402P)2 + 1.0163P] where P = (Fo2 + 2Fc2)/3 |
6309 reflections | (Δ/σ)max < 0.001 |
397 parameters | Δρmax = 0.57 e Å−3 |
8 restraints | Δρmin = −0.44 e Å−3 |
[Cu(C5H6O4)(ClO4)(C16H22N4)]ClO4·2H2O | γ = 84.638 (2)° |
Mr = 698.95 | V = 1404.3 (4) Å3 |
Triclinic, P1 | Z = 2 |
a = 9.6284 (15) Å | Mo Kα radiation |
b = 10.5140 (16) Å | µ = 1.04 mm−1 |
c = 14.061 (2) Å | T = 173 K |
α = 86.950 (2)° | 0.40 × 0.30 × 0.15 mm |
β = 82.634 (2)° |
Bruker SMART 1K diffractometer | 6309 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 4904 reflections with I > 2σ(I) |
Tmin = 0.680, Tmax = 0.859 | Rint = 0.035 |
14378 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | 8 restraints |
wR(F2) = 0.099 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.57 e Å−3 |
6309 reflections | Δρmin = −0.44 e Å−3 |
397 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cu1 | 0.73682 (3) | 0.38286 (3) | 0.22768 (2) | 0.01649 (9) | |
Cl1 | 0.52659 (6) | 0.15993 (6) | 0.15616 (4) | 0.01940 (14) | |
Cl2 | 0.04531 (7) | 0.26708 (7) | 0.67794 (5) | 0.02767 (17) | |
O1 | 0.89350 (18) | 0.26684 (16) | 0.17600 (12) | 0.0185 (4) | |
O1W | −0.3036 (3) | 0.0931 (2) | 0.7673 (2) | 0.0524 (7) | |
H1WA | −0.221 (3) | 0.124 (3) | 0.747 (3) | 0.063* | |
H1WB | −0.284 (4) | 0.013 (2) | 0.785 (3) | 0.063* | |
O2 | 1.06366 (18) | 0.11347 (16) | 0.18831 (12) | 0.0196 (4) | |
O2W | 0.6049 (5) | 0.2872 (3) | −0.1037 (2) | 0.0946 (12) | |
H2WA | 0.573 (6) | 0.247 (4) | −0.045 (2) | 0.114* | |
H2WB | 0.602 (6) | 0.218 (4) | −0.143 (3) | 0.114* | |
O3 | 0.71336 (18) | 0.28139 (17) | 0.34603 (13) | 0.0211 (4) | |
O4 | 0.78008 (19) | 0.12856 (17) | 0.44779 (13) | 0.0211 (4) | |
O5 | 0.6183 (2) | 0.07458 (18) | 0.20754 (14) | 0.0282 (5) | |
O6 | 0.5848 (2) | 0.28179 (18) | 0.13822 (15) | 0.0287 (5) | |
O7 | 0.5127 (2) | 0.1087 (2) | 0.06554 (15) | 0.0362 (5) | |
O8 | 0.3908 (2) | 0.1798 (2) | 0.21162 (16) | 0.0370 (5) | |
O9 | 0.1580 (3) | 0.1796 (2) | 0.70439 (19) | 0.0536 (7) | |
O10 | 0.0031 (3) | 0.3535 (2) | 0.75267 (17) | 0.0514 (7) | |
O11 | 0.0911 (3) | 0.3375 (3) | 0.59195 (18) | 0.0571 (7) | |
O12 | −0.0708 (3) | 0.2017 (2) | 0.6593 (2) | 0.0650 (9) | |
N1 | 0.7670 (2) | 0.50054 (19) | 0.11139 (15) | 0.0167 (5) | |
N2 | 0.8888 (2) | 0.91571 (19) | 0.00109 (15) | 0.0144 (4) | |
H2N | 0.908 (3) | 0.893 (2) | −0.0593 (13) | 0.017* | |
N3 | 0.5816 (2) | 0.50287 (19) | 0.29083 (15) | 0.0182 (5) | |
N4 | 0.4942 (2) | 0.8624 (2) | 0.49802 (15) | 0.0156 (4) | |
H4N | 0.3982 (18) | 0.863 (3) | 0.514 (2) | 0.019* | |
C1 | 0.9729 (3) | 0.1943 (2) | 0.22604 (18) | 0.0153 (5) | |
C2 | 0.9626 (3) | 0.2108 (2) | 0.33488 (18) | 0.0166 (5) | |
C3 | 0.8085 (3) | 0.2046 (2) | 0.37928 (18) | 0.0161 (5) | |
C4 | 1.0062 (3) | 0.3455 (3) | 0.3502 (2) | 0.0300 (7) | |
H4A | 0.9451 | 0.4102 | 0.3190 | 0.045* | |
H4B | 1.1041 | 0.3516 | 0.3223 | 0.045* | |
H4C | 0.9969 | 0.3600 | 0.4191 | 0.045* | |
C5 | 1.0578 (3) | 0.1103 (3) | 0.3830 (2) | 0.0255 (6) | |
H5A | 1.0483 | 0.1242 | 0.4520 | 0.038* | |
H5B | 1.1557 | 0.1172 | 0.3553 | 0.038* | |
H5C | 1.0309 | 0.0250 | 0.3728 | 0.038* | |
C11 | 0.7887 (3) | 0.4505 (3) | 0.02408 (19) | 0.0221 (6) | |
H11 | 0.7937 | 0.3602 | 0.0201 | 0.027* | |
C12 | 0.8040 (3) | 0.5242 (3) | −0.0596 (2) | 0.0246 (6) | |
H12 | 0.8197 | 0.4854 | −0.1200 | 0.029* | |
C13 | 0.7962 (3) | 0.6561 (3) | −0.05452 (19) | 0.0211 (6) | |
H13 | 0.8042 | 0.7092 | −0.1114 | 0.025* | |
C14 | 0.7766 (3) | 0.7096 (2) | 0.03496 (19) | 0.0169 (5) | |
C15 | 0.7619 (3) | 0.6285 (2) | 0.11544 (19) | 0.0166 (5) | |
H15 | 0.7475 | 0.6649 | 0.1767 | 0.020* | |
C16 | 0.7611 (3) | 0.8529 (2) | 0.0465 (2) | 0.0196 (6) | |
H16A | 0.6780 | 0.8906 | 0.0169 | 0.024* | |
H16B | 0.7447 | 0.8704 | 0.1157 | 0.024* | |
C17 | 1.0141 (3) | 0.8795 (2) | 0.05230 (18) | 0.0164 (5) | |
H17A | 1.0344 | 0.7855 | 0.0539 | 0.020* | |
H17B | 0.9939 | 0.9070 | 0.1193 | 0.020* | |
C18 | 0.8594 (3) | 1.0583 (2) | −0.00249 (19) | 0.0165 (5) | |
H18A | 0.8365 | 1.0888 | 0.0636 | 0.020* | |
H18B | 0.7774 | 1.0827 | −0.0375 | 0.020* | |
C21 | 0.4487 (3) | 0.5093 (3) | 0.2703 (2) | 0.0247 (6) | |
H21 | 0.4271 | 0.4612 | 0.2197 | 0.030* | |
C22 | 0.3425 (3) | 0.5851 (3) | 0.3216 (2) | 0.0307 (7) | |
H22 | 0.2487 | 0.5871 | 0.3069 | 0.037* | |
C23 | 0.3727 (3) | 0.6571 (3) | 0.3935 (2) | 0.0254 (6) | |
H23 | 0.3001 | 0.7085 | 0.4293 | 0.031* | |
C24 | 0.5109 (3) | 0.6542 (2) | 0.41357 (18) | 0.0187 (5) | |
C25 | 0.6108 (3) | 0.5742 (2) | 0.36102 (18) | 0.0176 (5) | |
H25 | 0.7050 | 0.5694 | 0.3753 | 0.021* | |
C26 | 0.5575 (3) | 0.7270 (2) | 0.49164 (19) | 0.0196 (6) | |
H26A | 0.5329 | 0.6812 | 0.5540 | 0.023* | |
H26B | 0.6611 | 0.7272 | 0.4807 | 0.023* | |
C27 | 0.5498 (3) | 0.9241 (2) | 0.57676 (18) | 0.0194 (6) | |
H27A | 0.6525 | 0.9282 | 0.5606 | 0.023* | |
H27B | 0.5336 | 0.8714 | 0.6369 | 0.023* | |
C28 | 0.5198 (3) | 0.9422 (2) | 0.40762 (18) | 0.0174 (5) | |
H28A | 0.4809 | 0.9038 | 0.3551 | 0.021* | |
H28B | 0.6222 | 0.9457 | 0.3891 | 0.021* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.01812 (17) | 0.01517 (16) | 0.01464 (17) | 0.00267 (12) | 0.00069 (12) | −0.00020 (12) |
Cl1 | 0.0194 (3) | 0.0213 (3) | 0.0175 (3) | −0.0024 (2) | −0.0016 (2) | −0.0016 (2) |
Cl2 | 0.0217 (3) | 0.0271 (4) | 0.0340 (4) | −0.0028 (3) | −0.0008 (3) | −0.0043 (3) |
O1 | 0.0208 (9) | 0.0205 (9) | 0.0129 (9) | 0.0050 (7) | −0.0027 (7) | −0.0007 (7) |
O1W | 0.0443 (15) | 0.0369 (14) | 0.074 (2) | −0.0042 (12) | −0.0019 (14) | 0.0062 (14) |
O2 | 0.0199 (9) | 0.0211 (9) | 0.0160 (9) | 0.0040 (8) | 0.0009 (7) | −0.0013 (7) |
O2W | 0.160 (4) | 0.070 (2) | 0.050 (2) | −0.014 (2) | 0.005 (2) | 0.0045 (17) |
O3 | 0.0181 (9) | 0.0240 (10) | 0.0182 (10) | 0.0053 (8) | 0.0020 (7) | 0.0040 (8) |
O4 | 0.0197 (9) | 0.0232 (10) | 0.0179 (10) | 0.0010 (8) | 0.0024 (7) | 0.0048 (8) |
O5 | 0.0284 (11) | 0.0276 (11) | 0.0268 (11) | 0.0047 (9) | −0.0029 (9) | 0.0028 (9) |
O6 | 0.0333 (11) | 0.0223 (10) | 0.0330 (12) | −0.0087 (9) | −0.0098 (9) | 0.0009 (9) |
O7 | 0.0451 (13) | 0.0387 (13) | 0.0287 (12) | −0.0031 (10) | −0.0144 (10) | −0.0129 (10) |
O8 | 0.0193 (10) | 0.0534 (14) | 0.0336 (12) | 0.0031 (10) | 0.0056 (9) | 0.0099 (11) |
O9 | 0.0453 (15) | 0.0555 (16) | 0.0568 (17) | 0.0255 (12) | −0.0116 (13) | −0.0118 (13) |
O10 | 0.0655 (17) | 0.0493 (15) | 0.0382 (14) | 0.0187 (13) | −0.0128 (13) | −0.0165 (12) |
O11 | 0.0573 (17) | 0.079 (2) | 0.0366 (15) | −0.0206 (15) | −0.0037 (12) | 0.0089 (14) |
O12 | 0.0332 (14) | 0.0416 (15) | 0.123 (3) | −0.0146 (11) | −0.0043 (15) | −0.0191 (16) |
N1 | 0.0172 (11) | 0.0154 (10) | 0.0169 (11) | −0.0011 (8) | 0.0000 (9) | −0.0012 (9) |
N2 | 0.0158 (10) | 0.0127 (10) | 0.0138 (11) | −0.0002 (8) | 0.0014 (8) | −0.0008 (8) |
N3 | 0.0207 (11) | 0.0150 (10) | 0.0175 (12) | 0.0014 (9) | 0.0005 (9) | 0.0010 (9) |
N4 | 0.0148 (10) | 0.0183 (11) | 0.0130 (11) | −0.0004 (9) | 0.0012 (8) | −0.0016 (8) |
C1 | 0.0150 (12) | 0.0135 (12) | 0.0169 (13) | −0.0041 (10) | 0.0018 (10) | 0.0004 (10) |
C2 | 0.0165 (13) | 0.0186 (13) | 0.0148 (13) | −0.0019 (10) | −0.0015 (10) | −0.0015 (10) |
C3 | 0.0177 (13) | 0.0142 (12) | 0.0158 (13) | 0.0000 (10) | 0.0013 (10) | −0.0052 (10) |
C4 | 0.0348 (17) | 0.0286 (16) | 0.0288 (17) | −0.0155 (13) | −0.0019 (13) | −0.0060 (13) |
C5 | 0.0197 (14) | 0.0377 (17) | 0.0172 (14) | 0.0049 (12) | −0.0015 (11) | 0.0023 (12) |
C11 | 0.0282 (15) | 0.0166 (13) | 0.0208 (14) | 0.0000 (11) | −0.0007 (11) | −0.0025 (11) |
C12 | 0.0336 (16) | 0.0228 (14) | 0.0167 (14) | −0.0034 (12) | 0.0009 (12) | −0.0040 (11) |
C13 | 0.0248 (14) | 0.0204 (13) | 0.0175 (14) | −0.0060 (11) | 0.0005 (11) | 0.0030 (11) |
C14 | 0.0139 (12) | 0.0141 (12) | 0.0224 (14) | −0.0037 (10) | 0.0003 (10) | 0.0005 (10) |
C15 | 0.0174 (13) | 0.0161 (12) | 0.0164 (13) | −0.0031 (10) | −0.0006 (10) | −0.0028 (10) |
C16 | 0.0171 (13) | 0.0155 (12) | 0.0250 (15) | −0.0033 (10) | 0.0037 (11) | 0.0000 (11) |
C17 | 0.0189 (13) | 0.0128 (12) | 0.0170 (13) | 0.0008 (10) | −0.0031 (10) | 0.0029 (10) |
C18 | 0.0165 (12) | 0.0117 (11) | 0.0203 (14) | 0.0010 (10) | −0.0009 (10) | 0.0003 (10) |
C21 | 0.0272 (15) | 0.0213 (14) | 0.0261 (15) | 0.0033 (12) | −0.0073 (12) | −0.0052 (12) |
C22 | 0.0218 (15) | 0.0313 (16) | 0.0394 (19) | 0.0047 (12) | −0.0073 (13) | −0.0101 (14) |
C23 | 0.0203 (14) | 0.0266 (15) | 0.0283 (16) | 0.0031 (12) | 0.0004 (12) | −0.0088 (12) |
C24 | 0.0209 (13) | 0.0172 (13) | 0.0172 (13) | −0.0013 (10) | 0.0000 (11) | 0.0011 (10) |
C25 | 0.0177 (13) | 0.0171 (12) | 0.0175 (13) | −0.0008 (10) | −0.0007 (10) | 0.0004 (10) |
C26 | 0.0198 (13) | 0.0186 (13) | 0.0190 (14) | 0.0035 (11) | −0.0010 (11) | −0.0020 (11) |
C27 | 0.0244 (14) | 0.0211 (13) | 0.0133 (13) | −0.0012 (11) | −0.0041 (11) | −0.0018 (10) |
C28 | 0.0212 (13) | 0.0197 (13) | 0.0107 (12) | −0.0030 (10) | 0.0016 (10) | −0.0018 (10) |
Cu1—O3 | 1.9283 (18) | C4—H4C | 0.9800 |
Cu1—O1 | 1.9394 (17) | C5—H5A | 0.9800 |
Cu1—N1 | 2.005 (2) | C5—H5B | 0.9800 |
Cu1—N3 | 2.010 (2) | C5—H5C | 0.9800 |
Cu1—O6 | 2.400 (2) | C11—C12 | 1.374 (4) |
Cl1—O5 | 1.433 (2) | C11—H11 | 0.9500 |
Cl1—O7 | 1.436 (2) | C12—C13 | 1.387 (4) |
Cl1—O8 | 1.438 (2) | C12—H12 | 0.9500 |
Cl1—O6 | 1.443 (2) | C13—C14 | 1.389 (4) |
Cl2—O10 | 1.420 (2) | C13—H13 | 0.9500 |
Cl2—O12 | 1.425 (3) | C14—C15 | 1.381 (3) |
Cl2—O11 | 1.426 (3) | C14—C16 | 1.516 (3) |
Cl2—O9 | 1.429 (2) | C15—H15 | 0.9500 |
O1—C1 | 1.278 (3) | C16—H16A | 0.9900 |
O1W—H1WA | 0.894 (18) | C16—H16B | 0.9900 |
O1W—H1WB | 0.875 (18) | C17—C18i | 1.511 (3) |
O2—C1 | 1.248 (3) | C17—H17A | 0.9900 |
O2W—H2WA | 0.929 (19) | C17—H17B | 0.9900 |
O2W—H2WB | 0.941 (19) | C18—C17i | 1.511 (3) |
O3—C3 | 1.281 (3) | C18—H18A | 0.9900 |
O4—C3 | 1.239 (3) | C18—H18B | 0.9900 |
N1—C11 | 1.345 (3) | C21—C22 | 1.386 (4) |
N1—C15 | 1.346 (3) | C21—H21 | 0.9500 |
N2—C17 | 1.492 (3) | C22—C23 | 1.370 (4) |
N2—C18 | 1.499 (3) | C22—H22 | 0.9500 |
N2—C16 | 1.503 (3) | C23—C24 | 1.392 (4) |
N2—H2N | 0.887 (17) | C23—H23 | 0.9500 |
N3—C21 | 1.342 (4) | C24—C25 | 1.383 (3) |
N3—C25 | 1.343 (3) | C24—C26 | 1.507 (4) |
N4—C28 | 1.492 (3) | C25—H25 | 0.9500 |
N4—C27 | 1.493 (3) | C26—H26A | 0.9900 |
N4—C26 | 1.498 (3) | C26—H26B | 0.9900 |
N4—H4N | 0.923 (17) | C27—C28ii | 1.514 (3) |
C1—C2 | 1.539 (4) | C27—H27A | 0.9900 |
C2—C5 | 1.522 (3) | C27—H27B | 0.9900 |
C2—C3 | 1.540 (3) | C28—C27ii | 1.514 (3) |
C2—C4 | 1.548 (4) | C28—H28A | 0.9900 |
C4—H4A | 0.9800 | C28—H28B | 0.9900 |
C4—H4B | 0.9800 | ||
O3—Cu1—O1 | 91.49 (7) | H5B—C5—H5C | 109.5 |
O3—Cu1—N1 | 174.84 (8) | N1—C11—C12 | 122.9 (2) |
O1—Cu1—N1 | 90.38 (8) | N1—C11—H11 | 118.6 |
O3—Cu1—N3 | 85.44 (8) | C12—C11—H11 | 118.6 |
O1—Cu1—N3 | 175.47 (8) | C11—C12—C13 | 118.9 (3) |
N1—Cu1—N3 | 92.41 (8) | C11—C12—H12 | 120.5 |
O3—Cu1—O6 | 99.44 (7) | C13—C12—H12 | 120.5 |
O1—Cu1—O6 | 89.56 (7) | C12—C13—C14 | 119.1 (2) |
N1—Cu1—O6 | 85.38 (8) | C12—C13—H13 | 120.5 |
N3—Cu1—O6 | 94.23 (8) | C14—C13—H13 | 120.5 |
O5—Cl1—O7 | 110.03 (13) | C15—C14—C13 | 118.2 (2) |
O5—Cl1—O8 | 110.26 (12) | C15—C14—C16 | 119.5 (2) |
O7—Cl1—O8 | 109.95 (14) | C13—C14—C16 | 122.2 (2) |
O5—Cl1—O6 | 109.60 (12) | N1—C15—C14 | 123.3 (2) |
O7—Cl1—O6 | 108.42 (13) | N1—C15—H15 | 118.4 |
O8—Cl1—O6 | 108.54 (13) | C14—C15—H15 | 118.4 |
O10—Cl2—O12 | 110.28 (17) | N2—C16—C14 | 112.3 (2) |
O10—Cl2—O11 | 109.08 (17) | N2—C16—H16A | 109.1 |
O12—Cl2—O11 | 107.14 (19) | C14—C16—H16A | 109.1 |
O10—Cl2—O9 | 109.14 (15) | N2—C16—H16B | 109.1 |
O12—Cl2—O9 | 111.41 (17) | C14—C16—H16B | 109.1 |
O11—Cl2—O9 | 109.75 (16) | H16A—C16—H16B | 107.9 |
C1—O1—Cu1 | 125.13 (16) | N2—C17—C18i | 110.5 (2) |
H1WA—O1W—H1WB | 106 (3) | N2—C17—H17A | 109.5 |
H2WA—O2W—H2WB | 98 (3) | C18i—C17—H17A | 109.5 |
C3—O3—Cu1 | 125.71 (16) | N2—C17—H17B | 109.5 |
Cl1—O6—Cu1 | 129.66 (12) | C18i—C17—H17B | 109.5 |
C11—N1—C15 | 117.6 (2) | H17A—C17—H17B | 108.1 |
C11—N1—Cu1 | 118.88 (17) | N2—C18—C17i | 110.23 (19) |
C15—N1—Cu1 | 123.45 (17) | N2—C18—H18A | 109.6 |
C17—N2—C18 | 109.43 (19) | C17i—C18—H18A | 109.6 |
C17—N2—C16 | 112.43 (19) | N2—C18—H18B | 109.6 |
C18—N2—C16 | 110.56 (18) | C17i—C18—H18B | 109.6 |
C17—N2—H2N | 109.4 (18) | H18A—C18—H18B | 108.1 |
C18—N2—H2N | 106.6 (17) | N3—C21—C22 | 121.2 (3) |
C16—N2—H2N | 108.2 (18) | N3—C21—H21 | 119.4 |
C21—N3—C25 | 118.6 (2) | C22—C21—H21 | 119.4 |
C21—N3—Cu1 | 123.14 (19) | C23—C22—C21 | 120.0 (3) |
C25—N3—Cu1 | 118.18 (17) | C23—C22—H22 | 120.0 |
C28—N4—C27 | 108.84 (19) | C21—C22—H22 | 120.0 |
C28—N4—C26 | 114.45 (19) | C22—C23—C24 | 119.3 (3) |
C27—N4—C26 | 109.3 (2) | C22—C23—H23 | 120.3 |
C28—N4—H4N | 107.8 (17) | C24—C23—H23 | 120.3 |
C27—N4—H4N | 107.2 (18) | C25—C24—C23 | 117.4 (2) |
C26—N4—H4N | 109.1 (17) | C25—C24—C26 | 117.9 (2) |
O2—C1—O1 | 121.6 (2) | C23—C24—C26 | 124.5 (2) |
O2—C1—C2 | 118.6 (2) | N3—C25—C24 | 123.4 (2) |
O1—C1—C2 | 119.7 (2) | N3—C25—H25 | 118.3 |
C5—C2—C1 | 112.0 (2) | C24—C25—H25 | 118.3 |
C5—C2—C3 | 110.5 (2) | N4—C26—C24 | 114.5 (2) |
C1—C2—C3 | 108.9 (2) | N4—C26—H26A | 108.6 |
C5—C2—C4 | 109.5 (2) | C24—C26—H26A | 108.6 |
C1—C2—C4 | 107.7 (2) | N4—C26—H26B | 108.6 |
C3—C2—C4 | 108.1 (2) | C24—C26—H26B | 108.6 |
O4—C3—O3 | 121.7 (2) | H26A—C26—H26B | 107.6 |
O4—C3—C2 | 119.4 (2) | N4—C27—C28ii | 111.7 (2) |
O3—C3—C2 | 118.9 (2) | N4—C27—H27A | 109.3 |
C2—C4—H4A | 109.5 | C28ii—C27—H27A | 109.3 |
C2—C4—H4B | 109.5 | N4—C27—H27B | 109.3 |
H4A—C4—H4B | 109.5 | C28ii—C27—H27B | 109.3 |
C2—C4—H4C | 109.5 | H27A—C27—H27B | 107.9 |
H4A—C4—H4C | 109.5 | N4—C28—C27ii | 109.3 (2) |
H4B—C4—H4C | 109.5 | N4—C28—H28A | 109.8 |
C2—C5—H5A | 109.5 | C27ii—C28—H28A | 109.8 |
C2—C5—H5B | 109.5 | N4—C28—H28B | 109.8 |
H5A—C5—H5B | 109.5 | C27ii—C28—H28B | 109.8 |
C2—C5—H5C | 109.5 | H28A—C28—H28B | 108.3 |
H5A—C5—H5C | 109.5 | ||
O3—Cu1—O1—C1 | −25.1 (2) | C1—C2—C3—O3 | −55.3 (3) |
N1—Cu1—O1—C1 | 150.0 (2) | C4—C2—C3—O3 | 61.4 (3) |
O6—Cu1—O1—C1 | −124.6 (2) | C15—N1—C11—C12 | −0.7 (4) |
O1—Cu1—O3—C3 | 23.3 (2) | Cu1—N1—C11—C12 | 177.0 (2) |
N3—Cu1—O3—C3 | −153.4 (2) | N1—C11—C12—C13 | −0.3 (4) |
O6—Cu1—O3—C3 | 113.1 (2) | C11—C12—C13—C14 | 1.5 (4) |
O5—Cl1—O6—Cu1 | −27.77 (19) | C12—C13—C14—C15 | −1.7 (4) |
O7—Cl1—O6—Cu1 | −147.89 (15) | C12—C13—C14—C16 | −177.5 (2) |
O8—Cl1—O6—Cu1 | 92.71 (17) | C11—N1—C15—C14 | 0.5 (4) |
O3—Cu1—O6—Cl1 | −15.88 (17) | Cu1—N1—C15—C14 | −177.01 (19) |
O1—Cu1—O6—Cl1 | 75.56 (16) | C13—C14—C15—N1 | 0.7 (4) |
N1—Cu1—O6—Cl1 | 165.97 (17) | C16—C14—C15—N1 | 176.6 (2) |
N3—Cu1—O6—Cl1 | −101.95 (16) | C17—N2—C16—C14 | −68.1 (3) |
O1—Cu1—N1—C11 | 45.5 (2) | C18—N2—C16—C14 | 169.3 (2) |
N3—Cu1—N1—C11 | −138.1 (2) | C15—C14—C16—N2 | 123.4 (3) |
O6—Cu1—N1—C11 | −44.05 (19) | C13—C14—C16—N2 | −60.9 (3) |
O1—Cu1—N1—C15 | −137.0 (2) | C18—N2—C17—C18i | −58.4 (3) |
N3—Cu1—N1—C15 | 39.4 (2) | C16—N2—C17—C18i | 178.3 (2) |
O6—Cu1—N1—C15 | 133.5 (2) | C17—N2—C18—C17i | 58.2 (3) |
O3—Cu1—N3—C21 | −103.2 (2) | C16—N2—C18—C17i | −177.4 (2) |
N1—Cu1—N3—C21 | 81.5 (2) | C25—N3—C21—C22 | −1.7 (4) |
O6—Cu1—N3—C21 | −4.0 (2) | Cu1—N3—C21—C22 | 174.1 (2) |
O3—Cu1—N3—C25 | 72.62 (18) | N3—C21—C22—C23 | 1.3 (4) |
N1—Cu1—N3—C25 | −102.68 (19) | C21—C22—C23—C24 | 0.6 (4) |
O6—Cu1—N3—C25 | 171.78 (18) | C22—C23—C24—C25 | −2.1 (4) |
Cu1—O1—C1—O2 | 173.27 (17) | C22—C23—C24—C26 | −178.9 (3) |
Cu1—O1—C1—C2 | −9.9 (3) | C21—N3—C25—C24 | 0.0 (4) |
O2—C1—C2—C5 | −7.0 (3) | Cu1—N3—C25—C24 | −175.96 (19) |
O1—C1—C2—C5 | 176.1 (2) | C23—C24—C25—N3 | 1.9 (4) |
O2—C1—C2—C3 | −129.6 (2) | C26—C24—C25—N3 | 178.8 (2) |
O1—C1—C2—C3 | 53.5 (3) | C28—N4—C26—C24 | −56.9 (3) |
O2—C1—C2—C4 | 113.4 (3) | C27—N4—C26—C24 | −179.2 (2) |
O1—C1—C2—C4 | −63.5 (3) | C25—C24—C26—N4 | 139.4 (2) |
Cu1—O3—C3—O4 | −168.75 (18) | C23—C24—C26—N4 | −43.9 (4) |
Cu1—O3—C3—C2 | 13.4 (3) | C28—N4—C27—C28ii | 59.3 (3) |
C5—C2—C3—O4 | 3.3 (3) | C26—N4—C27—C28ii | −175.1 (2) |
C1—C2—C3—O4 | 126.8 (2) | C27—N4—C28—C27ii | −57.8 (3) |
C4—C2—C3—O4 | −116.5 (3) | C26—N4—C28—C27ii | 179.7 (2) |
C5—C2—C3—O3 | −178.8 (2) |
Symmetry codes: (i) −x+2, −y+2, −z; (ii) −x+1, −y+2, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1WA···O12 | 0.89 (2) | 1.98 (2) | 2.838 (4) | 160 (4) |
O1W—H1WB···O8iii | 0.88 (2) | 2.35 (3) | 3.053 (4) | 137 (3) |
O1W—H1WB···O2iv | 0.88 (2) | 2.46 (3) | 3.120 (3) | 133 (3) |
O2W—H2WA···O7 | 0.93 (2) | 2.14 (2) | 3.044 (4) | 164 (4) |
O2W—H2WB···O1Wv | 0.94 (2) | 1.95 (3) | 2.807 (5) | 150 (5) |
N2—H2N···O2vi | 0.89 (2) | 1.80 (2) | 2.673 (3) | 166 (3) |
N4—H4N···O4vii | 0.92 (2) | 1.73 (2) | 2.647 (3) | 175 (3) |
Symmetry codes: (iii) −x, −y, −z+1; (iv) −x+1, −y, −z+1; (v) x+1, y, z−1; (vi) −x+2, −y+1, −z; (vii) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Cu(C5H6O4)(ClO4)(C16H22N4)]ClO4·2H2O |
Mr | 698.95 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 173 |
a, b, c (Å) | 9.6284 (15), 10.5140 (16), 14.061 (2) |
α, β, γ (°) | 86.950 (2), 82.634 (2), 84.638 (2) |
V (Å3) | 1404.3 (4) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.04 |
Crystal size (mm) | 0.40 × 0.30 × 0.15 |
Data collection | |
Diffractometer | Bruker SMART 1K diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.680, 0.859 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 14378, 6309, 4904 |
Rint | 0.035 |
(sin θ/λ)max (Å−1) | 0.666 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.099, 1.05 |
No. of reflections | 6309 |
No. of parameters | 397 |
No. of restraints | 8 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.57, −0.44 |
Computer programs: SMART (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), Crystal Maker (Palmer, 2007).
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1WA···O12 | 0.894 (18) | 1.98 (2) | 2.838 (4) | 160 (4) |
O1W—H1WB···O8i | 0.875 (18) | 2.35 (3) | 3.053 (4) | 137 (3) |
O1W—H1WB···O2ii | 0.875 (18) | 2.46 (3) | 3.120 (3) | 133 (3) |
O2W—H2WA···O7 | 0.929 (19) | 2.14 (2) | 3.044 (4) | 164 (4) |
O2W—H2WB···O1Wiii | 0.941 (19) | 1.95 (3) | 2.807 (5) | 150 (5) |
N2—H2N···O2iv | 0.887 (17) | 1.804 (18) | 2.673 (3) | 166 (3) |
N4—H4N···O4v | 0.923 (17) | 1.727 (17) | 2.647 (3) | 175 (3) |
Symmetry codes: (i) −x, −y, −z+1; (ii) −x+1, −y, −z+1; (iii) x+1, y, z−1; (iv) −x+2, −y+1, −z; (v) −x+1, −y+1, −z+1. |
Acknowledgements
We gratefully acknowledge the donors of the American Chemical Society Petroleum Research Fund and Michigan State University for funding this work.
References
Bruker (2007). SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Johnston, L. L., Martin, D. P. & LaDuca, R. L. (2008). Inorg. Chim. Acta, 361, 2887–2894. Web of Science CSD CrossRef CAS Google Scholar
Palmer, D. (2007). Crystal Maker. Crystal Maker, Bicester, Oxfordshire, England. Google Scholar
Pocic, D., Planeix, J.-M., Kyritsakas, N., Jouaiti, A., Abdelaziz, H. & Wais, M. (2005). CrystEngComm, 7, 624–628. Web of Science CSD CrossRef CAS Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
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In comparison to coordination polymers based on the rigid rod tether 4,4'- bipyridine, extended phases based on the flexible and hydrogen-bonding capable bis(3-pyridylmethyl)piperazine (3-bpmp) ligand are much less common (Johnston et al., 2008).
The asymmetric unit of the title compound contains a divalent copper atom, two halves of two 3-bpmp molecules protonated at their piperazinyl nitrogen atoms, one dimethylmalonate dianion, one bound and one unbound perchlorate ion and two water molecules of crystallization (Figure 1). The Cu atoms are square pyramidally coordinated in a {CuN2O3} arrangement, with the basal plane occupied by two cis N atom donors from two crystallographically distinct 3-bpmp ligands and two cis O atom donors from a dimethylmalonate ligand in a 1,3-chelating binding mode. The apical position is filled by a ligated perchlorate anion.
The 3-bpmp ligands link the Cu atoms into sinusoidal cationic coordination polymer chains with formulation [Cu(3-bpmpH2)(dimethylmalonate)(ClO4)]nn+ (Figure 2), in which the through ligand Cu···Cu contact distance is 15.441 Å. The "wavelength" of this chain, defined by unbridged Cu···Cu contacts, is 15.991 Å. The chains are aligned parallel to the [1 0 1] crystal direction.
Neighboring chains interdigitate and aggregate into a pseudolayer (Figure 3) parallel to the (1 0 1) crystal plane by N—H···O hydrogen bonding between protonated piperazinyl N atoms and unligated dimethylmalonate O atoms. These stack into three dimensions (Figure 4) through additional hydrogen bonding patterns involving unligated perchlorate anions and water molecule dimers, and dimethylmalonate O atoms within the coordination polymer chains.