organic compounds
(E)-2-(5,5-Dimethylhexahydropyrimidin-2-yl)-4-(phenyldiazenyl)phenol
aChemistry Department, Shahid Bahonar University, Kerman, Iran, and bSchool of Chemistry, University College of Science, University of Tehran, Tehran, Iran
*Correspondence e-mail: aabbasi@khayam.ut.ac.ir
In the title Schiff base, C18H22N4O, the hexahydropyrimidinyl ring adopts a chair conformation. The dihedral angle between the aromatic rings of the 4-(2-phenyldiazenyl)phenol unit is 15.7 (1)°. There is an intramolecular O—H⋯N hydrogen bond between the hydroxyl group and an N atom of the hexahydropyimidinyl unit. Intermolecular N—H⋯O and N—H⋯N hydrogen bonds give rise to a layer structure.
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1998); cell SAINT-Plus (Bruker, 1998); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2001); software used to prepare material for publication: PLATON (Spek, 2003).
Supporting information
10.1107/S1600536808038877/ng2518sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808038877/ng2518Isup2.hkl
The title compound was prepared via condensation of (E)-5-(2-phenyldiazenyl)-2-hydroxybenzaldehyde and 2,2-dimethylpropane-1,3-diamine in 20 ml EtOH:CHCl3. The mixture solution was stirred and refluxed for 3 h. Colorless prismatic-shape crystals were obtained after evaporation of the excess solvent.
Aromatic and methyl H atoms were placed in calculated positions (C—H = 0.93 Å, C—H = 0.96 Å, respectively) and constrained to ride on their parent atoms, with Uiso(H) = 1.2 and 1.5 Ueq(C), respectively. Methylene, hydroxyl and amine H atoms were located in difference density maps and their coordinates were refined freely with Uiso(H) = 1.5 Ueq(C, O & N).
Data collection: SMART (Bruker, 1998); cell
SAINT-Plus (Bruker, 1998); data reduction: SAINT-Plus (Bruker, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2001); software used to prepare material for publication: PLATON (Spek, 2003).Fig. 1. Molecular structure of (I), with 50% probability displacement ellipsoids. H atoms are shown as circles of arbitrary radii. |
C18H22N4O | F(000) = 1328 |
Mr = 310.40 | Dx = 1.225 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 14483 reflections |
a = 9.0287 (9) Å | θ = 3–60° |
b = 12.0767 (12) Å | µ = 0.08 mm−1 |
c = 30.866 (3) Å | T = 120 K |
V = 3365.5 (6) Å3 | Prism, colorless |
Z = 8 | 0.23 × 0.20 × 0.16 mm |
Bruker SMART 1000 CCD area-detector diffractometer | 3134 independent reflections |
Radiation source: fine-focus sealed tube | 1574 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.078 |
ϕ and ω scans | θmax = 25.5°, θmin = 2.6° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −10→10 |
Tmin = 0.970, Tmax = 0.987 | k = −14→14 |
14483 measured reflections | l = −32→37 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.050 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.114 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.81 | w = 1/[σ2(Fo2) + (0.049P)2] where P = (Fo2 + 2Fc2)/3 |
3134 reflections | (Δ/σ)max < 0.001 |
234 parameters | Δρmax = 0.22 e Å−3 |
0 restraints | Δρmin = −0.22 e Å−3 |
C18H22N4O | V = 3365.5 (6) Å3 |
Mr = 310.40 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 9.0287 (9) Å | µ = 0.08 mm−1 |
b = 12.0767 (12) Å | T = 120 K |
c = 30.866 (3) Å | 0.23 × 0.20 × 0.16 mm |
Bruker SMART 1000 CCD area-detector diffractometer | 3134 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1574 reflections with I > 2σ(I) |
Tmin = 0.970, Tmax = 0.987 | Rint = 0.078 |
14483 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | 0 restraints |
wR(F2) = 0.114 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.81 | Δρmax = 0.22 e Å−3 |
3134 reflections | Δρmin = −0.22 e Å−3 |
234 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.69820 (17) | 0.17061 (13) | 0.26940 (5) | 0.0314 (4) | |
H1A | 0.710 (3) | 0.121 (2) | 0.2433 (7) | 0.047* | |
N1 | 0.9722 (2) | −0.15729 (17) | 0.40388 (6) | 0.0301 (5) | |
N2 | 0.9051 (2) | −0.06703 (18) | 0.41075 (6) | 0.0312 (5) | |
N3 | 0.7588 (2) | 0.00338 (17) | 0.22029 (6) | 0.0259 (5) | |
H3A | 0.692 (3) | −0.0499 (19) | 0.2283 (7) | 0.039* | |
N4 | 0.9679 (2) | −0.11263 (17) | 0.24545 (6) | 0.0260 (5) | |
H4A | 0.911 (3) | −0.1732 (19) | 0.2543 (7) | 0.039* | |
C1 | 0.8894 (3) | −0.0082 (2) | 0.24903 (7) | 0.0237 (6) | |
H1 | 0.964 (2) | 0.0526 (18) | 0.2397 (6) | 0.036* | |
C2 | 0.8017 (3) | −0.0160 (2) | 0.17456 (7) | 0.0261 (6) | |
H21 | 0.876 (3) | 0.0485 (19) | 0.1681 (7) | 0.039* | |
H22 | 0.707 (2) | −0.0077 (18) | 0.1561 (7) | 0.039* | |
C3 | 1.0059 (3) | −0.1371 (2) | 0.20003 (8) | 0.0277 (6) | |
H31 | 1.087 (2) | −0.081 (2) | 0.1916 (7) | 0.042* | |
H32 | 1.048 (2) | −0.212 (2) | 0.1986 (7) | 0.042* | |
C4 | 0.8774 (2) | −0.1275 (2) | 0.16755 (7) | 0.0265 (6) | |
C5 | 0.8460 (2) | 0.0185 (2) | 0.29537 (7) | 0.0237 (6) | |
C6 | 0.7534 (2) | 0.11069 (19) | 0.30298 (7) | 0.0244 (6) | |
C7 | 0.7169 (3) | 0.1417 (2) | 0.34482 (7) | 0.0306 (6) | |
H7 | 0.6563 | 0.2028 | 0.3495 | 0.037* | |
C8 | 0.7703 (3) | 0.0821 (2) | 0.37939 (7) | 0.0302 (6) | |
H8 | 0.7471 | 0.1039 | 0.4075 | 0.036* | |
C9 | 0.8586 (2) | −0.0104 (2) | 0.37271 (7) | 0.0267 (6) | |
C10 | 0.8971 (2) | −0.0407 (2) | 0.33038 (7) | 0.0261 (6) | |
H10 | 0.9581 | −0.1017 | 0.3259 | 0.031* | |
C11 | 1.0190 (3) | −0.2133 (2) | 0.44232 (7) | 0.0295 (6) | |
C12 | 1.0096 (3) | −0.1697 (2) | 0.48356 (7) | 0.0423 (7) | |
H12 | 0.9718 | −0.0989 | 0.4878 | 0.051* | |
C13 | 1.0566 (3) | −0.2317 (3) | 0.51851 (8) | 0.0508 (8) | |
H13 | 1.0503 | −0.2024 | 0.5463 | 0.061* | |
C14 | 1.1127 (3) | −0.3367 (3) | 0.51259 (8) | 0.0501 (8) | |
H14 | 1.1445 | −0.3778 | 0.5363 | 0.060* | |
C15 | 1.1217 (3) | −0.3807 (3) | 0.47163 (8) | 0.0481 (8) | |
H15 | 1.1587 | −0.4518 | 0.4676 | 0.058* | |
C16 | 1.0754 (3) | −0.3187 (2) | 0.43638 (8) | 0.0404 (7) | |
H16 | 1.0822 | −0.3481 | 0.4086 | 0.049* | |
C17 | 0.7683 (3) | −0.22207 (19) | 0.17308 (7) | 0.0326 (6) | |
H17A | 0.7266 | −0.2195 | 0.2017 | 0.049* | |
H17B | 0.8186 | −0.2913 | 0.1690 | 0.049* | |
H17C | 0.6905 | −0.2152 | 0.1520 | 0.049* | |
C18 | 0.9416 (3) | −0.1313 (2) | 0.12165 (7) | 0.0371 (7) | |
H18A | 0.8627 | −0.1258 | 0.1009 | 0.056* | |
H18B | 0.9936 | −0.1998 | 0.1175 | 0.056* | |
H18C | 1.0089 | −0.0705 | 0.1177 | 0.056* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0319 (10) | 0.0309 (11) | 0.0312 (10) | 0.0044 (8) | 0.0002 (8) | 0.0017 (8) |
N1 | 0.0269 (12) | 0.0339 (13) | 0.0294 (12) | −0.0031 (11) | −0.0025 (9) | 0.0034 (10) |
N2 | 0.0262 (12) | 0.0355 (13) | 0.0320 (12) | −0.0021 (11) | −0.0005 (10) | 0.0029 (10) |
N3 | 0.0220 (11) | 0.0308 (13) | 0.0249 (11) | −0.0014 (10) | −0.0025 (9) | 0.0016 (10) |
N4 | 0.0241 (12) | 0.0288 (12) | 0.0250 (11) | −0.0012 (10) | 0.0007 (9) | 0.0020 (10) |
C1 | 0.0190 (13) | 0.0262 (14) | 0.0259 (13) | 0.0022 (12) | −0.0040 (11) | 0.0008 (11) |
C2 | 0.0242 (14) | 0.0292 (15) | 0.0250 (14) | 0.0024 (12) | 0.0000 (11) | 0.0011 (11) |
C3 | 0.0239 (14) | 0.0315 (16) | 0.0277 (14) | 0.0011 (12) | −0.0007 (11) | −0.0021 (12) |
C4 | 0.0236 (13) | 0.0310 (15) | 0.0250 (13) | −0.0040 (12) | −0.0002 (11) | 0.0021 (11) |
C5 | 0.0173 (12) | 0.0276 (14) | 0.0260 (13) | −0.0033 (11) | −0.0014 (10) | −0.0003 (11) |
C6 | 0.0205 (13) | 0.0237 (14) | 0.0290 (13) | −0.0048 (11) | 0.0002 (12) | 0.0031 (11) |
C7 | 0.0286 (15) | 0.0290 (15) | 0.0342 (15) | 0.0004 (12) | 0.0018 (12) | −0.0032 (12) |
C8 | 0.0282 (15) | 0.0328 (15) | 0.0297 (14) | −0.0045 (13) | 0.0040 (12) | −0.0040 (11) |
C9 | 0.0241 (14) | 0.0308 (15) | 0.0251 (13) | −0.0072 (12) | −0.0008 (11) | 0.0014 (11) |
C10 | 0.0203 (13) | 0.0284 (15) | 0.0295 (14) | −0.0005 (11) | −0.0008 (11) | −0.0008 (11) |
C11 | 0.0282 (14) | 0.0354 (16) | 0.0250 (14) | −0.0024 (13) | −0.0027 (11) | 0.0050 (12) |
C12 | 0.0562 (19) | 0.0416 (18) | 0.0292 (15) | −0.0041 (15) | −0.0075 (14) | 0.0021 (14) |
C13 | 0.066 (2) | 0.058 (2) | 0.0279 (15) | −0.0043 (18) | −0.0083 (14) | 0.0001 (15) |
C14 | 0.055 (2) | 0.063 (2) | 0.0325 (17) | −0.0007 (17) | −0.0086 (15) | 0.0163 (15) |
C15 | 0.0481 (19) | 0.050 (2) | 0.0462 (18) | 0.0091 (16) | −0.0025 (15) | 0.0125 (15) |
C16 | 0.0401 (17) | 0.0511 (19) | 0.0300 (15) | 0.0032 (15) | −0.0031 (13) | 0.0007 (13) |
C17 | 0.0339 (15) | 0.0339 (16) | 0.0299 (13) | 0.0007 (13) | −0.0056 (12) | −0.0002 (11) |
C18 | 0.0368 (16) | 0.0435 (17) | 0.0310 (14) | 0.0005 (14) | 0.0038 (12) | −0.0007 (13) |
O1—C6 | 1.358 (2) | C7—C8 | 1.375 (3) |
O1—H1A | 1.01 (2) | C7—H7 | 0.9300 |
N1—N2 | 1.265 (3) | C8—C9 | 1.387 (3) |
N1—C11 | 1.429 (3) | C8—H8 | 0.9300 |
N2—C9 | 1.422 (3) | C9—C10 | 1.401 (3) |
N3—C2 | 1.482 (3) | C10—H10 | 0.9300 |
N3—C1 | 1.483 (3) | C11—C12 | 1.380 (3) |
N3—H3A | 0.92 (2) | C11—C16 | 1.384 (3) |
N4—C1 | 1.451 (3) | C12—C13 | 1.380 (3) |
N4—C3 | 1.473 (3) | C12—H12 | 0.9300 |
N4—H4A | 0.93 (2) | C13—C14 | 1.377 (4) |
C1—C5 | 1.518 (3) | C13—H13 | 0.9300 |
C1—H1 | 1.04 (2) | C14—C15 | 1.374 (3) |
C2—C4 | 1.525 (3) | C14—H14 | 0.9300 |
C2—H21 | 1.05 (2) | C15—C16 | 1.385 (3) |
C2—H22 | 1.03 (2) | C15—H15 | 0.9300 |
C3—C4 | 1.537 (3) | C16—H16 | 0.9300 |
C3—H31 | 1.03 (2) | C17—H17A | 0.9600 |
C3—H32 | 0.98 (2) | C17—H17B | 0.9600 |
C4—C17 | 1.518 (3) | C17—H17C | 0.9600 |
C4—C18 | 1.531 (3) | C18—H18A | 0.9600 |
C5—C10 | 1.375 (3) | C18—H18B | 0.9600 |
C5—C6 | 1.412 (3) | C18—H18C | 0.9600 |
C6—C7 | 1.385 (3) | ||
C6—O1—H1A | 104.5 (13) | C6—C7—H7 | 120.1 |
N2—N1—C11 | 114.21 (19) | C7—C8—C9 | 120.5 (2) |
N1—N2—C9 | 114.67 (19) | C7—C8—H8 | 119.7 |
C2—N3—C1 | 110.27 (18) | C9—C8—H8 | 119.7 |
C2—N3—H3A | 108.7 (14) | C8—C9—C10 | 119.4 (2) |
C1—N3—H3A | 107.3 (14) | C8—C9—N2 | 115.7 (2) |
C1—N4—C3 | 111.13 (19) | C10—C9—N2 | 124.8 (2) |
C1—N4—H4A | 113.1 (14) | C5—C10—C9 | 120.9 (2) |
C3—N4—H4A | 104.4 (14) | C5—C10—H10 | 119.5 |
N4—C1—N3 | 115.15 (19) | C9—C10—H10 | 119.5 |
N4—C1—C5 | 112.51 (19) | C12—C11—C16 | 119.7 (2) |
N3—C1—C5 | 109.76 (18) | C12—C11—N1 | 124.5 (2) |
N4—C1—H1 | 106.2 (12) | C16—C11—N1 | 115.7 (2) |
N3—C1—H1 | 106.5 (12) | C11—C12—C13 | 119.6 (3) |
C5—C1—H1 | 106.1 (11) | C11—C12—H12 | 120.2 |
N3—C2—C4 | 113.06 (19) | C13—C12—H12 | 120.2 |
N3—C2—H21 | 103.4 (12) | C14—C13—C12 | 120.6 (2) |
C4—C2—H21 | 110.0 (13) | C14—C13—H13 | 119.7 |
N3—C2—H22 | 107.0 (12) | C12—C13—H13 | 119.7 |
C4—C2—H22 | 112.2 (13) | C15—C14—C13 | 120.0 (3) |
H21—C2—H22 | 110.8 (17) | C15—C14—H14 | 120.0 |
N4—C3—C4 | 115.46 (19) | C13—C14—H14 | 120.0 |
N4—C3—H31 | 105.8 (12) | C14—C15—C16 | 119.8 (3) |
C4—C3—H31 | 108.8 (12) | C14—C15—H15 | 120.1 |
N4—C3—H32 | 108.5 (13) | C16—C15—H15 | 120.1 |
C4—C3—H32 | 109.2 (13) | C11—C16—C15 | 120.3 (2) |
H31—C3—H32 | 108.9 (18) | C11—C16—H16 | 119.9 |
C17—C4—C2 | 110.9 (2) | C15—C16—H16 | 119.9 |
C17—C4—C18 | 109.10 (19) | C4—C17—H17A | 109.5 |
C2—C4—C18 | 109.10 (19) | C4—C17—H17B | 109.5 |
C17—C4—C3 | 111.07 (19) | H17A—C17—H17B | 109.5 |
C2—C4—C3 | 108.18 (19) | C4—C17—H17C | 109.5 |
C18—C4—C3 | 108.39 (19) | H17A—C17—H17C | 109.5 |
C10—C5—C6 | 118.6 (2) | H17B—C17—H17C | 109.5 |
C10—C5—C1 | 122.9 (2) | C4—C18—H18A | 109.5 |
C6—C5—C1 | 118.5 (2) | C4—C18—H18B | 109.5 |
O1—C6—C7 | 118.7 (2) | H18A—C18—H18B | 109.5 |
O1—C6—C5 | 120.7 (2) | C4—C18—H18C | 109.5 |
C7—C6—C5 | 120.6 (2) | H18A—C18—H18C | 109.5 |
C8—C7—C6 | 119.9 (2) | H18B—C18—H18C | 109.5 |
C8—C7—H7 | 120.1 | ||
C11—N1—N2—C9 | 179.73 (19) | O1—C6—C7—C8 | 179.6 (2) |
C3—N4—C1—N3 | 52.1 (3) | C5—C6—C7—C8 | −0.4 (3) |
C3—N4—C1—C5 | 178.90 (19) | C6—C7—C8—C9 | −1.2 (4) |
C2—N3—C1—N4 | −55.2 (3) | C7—C8—C9—C10 | 2.1 (3) |
C2—N3—C1—C5 | 176.64 (19) | C7—C8—C9—N2 | −178.7 (2) |
C1—N3—C2—C4 | 55.4 (3) | N1—N2—C9—C8 | 173.0 (2) |
C1—N4—C3—C4 | −50.2 (3) | N1—N2—C9—C10 | −7.9 (3) |
N3—C2—C4—C17 | 69.7 (2) | C6—C5—C10—C9 | −0.1 (3) |
N3—C2—C4—C18 | −170.09 (19) | C1—C5—C10—C9 | 177.5 (2) |
N3—C2—C4—C3 | −52.4 (3) | C8—C9—C10—C5 | −1.4 (3) |
N4—C3—C4—C17 | −71.9 (3) | N2—C9—C10—C5 | 179.4 (2) |
N4—C3—C4—C2 | 50.1 (3) | N2—N1—C11—C12 | −7.3 (3) |
N4—C3—C4—C18 | 168.3 (2) | N2—N1—C11—C16 | 171.9 (2) |
N4—C1—C5—C10 | 10.1 (3) | C16—C11—C12—C13 | 0.0 (4) |
N3—C1—C5—C10 | 139.7 (2) | N1—C11—C12—C13 | 179.2 (2) |
N4—C1—C5—C6 | −172.34 (19) | C11—C12—C13—C14 | 0.0 (4) |
N3—C1—C5—C6 | −42.7 (3) | C12—C13—C14—C15 | −0.3 (4) |
C10—C5—C6—O1 | −178.9 (2) | C13—C14—C15—C16 | 0.6 (4) |
C1—C5—C6—O1 | 3.4 (3) | C12—C11—C16—C15 | 0.3 (4) |
C10—C5—C6—C7 | 1.0 (3) | N1—C11—C16—C15 | −179.0 (2) |
C1—C5—C6—C7 | −176.7 (2) | C14—C15—C16—C11 | −0.6 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···N3 | 1.01 (2) | 1.65 (2) | 2.584 (2) | 152 (2) |
N3—H3A···N4i | 0.92 (2) | 2.30 (2) | 3.159 (3) | 155 (2) |
N4—H4A···O1ii | 0.93 (2) | 2.18 (2) | 3.106 (3) | 172 (2) |
Symmetry codes: (i) x−1/2, y, −z+1/2; (ii) −x+3/2, y−1/2, z. |
Experimental details
Crystal data | |
Chemical formula | C18H22N4O |
Mr | 310.40 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 120 |
a, b, c (Å) | 9.0287 (9), 12.0767 (12), 30.866 (3) |
V (Å3) | 3365.5 (6) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.23 × 0.20 × 0.16 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.970, 0.987 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 14483, 3134, 1574 |
Rint | 0.078 |
(sin θ/λ)max (Å−1) | 0.606 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.114, 0.81 |
No. of reflections | 3134 |
No. of parameters | 234 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.22, −0.22 |
Computer programs: SMART (Bruker, 1998), SAINT-Plus (Bruker, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), DIAMOND (Brandenburg, 2001), PLATON (Spek, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···N3 | 1.01 (2) | 1.65 (2) | 2.584 (2) | 152 (2) |
N3—H3A···N4i | 0.92 (2) | 2.30 (2) | 3.159 (3) | 155 (2) |
N4—H4A···O1ii | 0.93 (2) | 2.18 (2) | 3.106 (3) | 172 (2) |
Symmetry codes: (i) x−1/2, y, −z+1/2; (ii) −x+3/2, y−1/2, z. |
Acknowledgements
This work was supported by a grant from the University of Kerman and the University of Tehran.
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Heterocycles containing nitrogen atoms e.g. hexahydropyrimidines have applications in both inorganic and organic chemistry. Hexahydropyrimidines can be easily prepared from condensations of alkyl diamines and aldehydes. Our interest in synthesizing derivatives of these heterocycles was due to their anti-carcinoma, anti-lymphoma, and anti-biotic properties.
The molecular structure of (I) and the atom-numbering scheme are shown in Fig. 1. Two aromatic rings A (C5—C10) and B (C11—C16) show a little deviation from planarity with a dihedral angle of 15.7 (1)o. Hexahydropyrimidine has a chair conformation. Intramolecular hydrogen bonds are formed between the phenol hydroxyl groups and the nearest N atom in the hexahydropyimidine groups [O—H···N = 2.584 (2) Å]. The packing of the structure is stabilized by relatively strong N—H···O & N—H···N hydrogen bonds (see Tab. 1), and C—H···π contacts [C—H-cetroid = 2.70 Å] between neighboring molecules. No significant π-π interactions are found in the crystal structure.