metal-organic compounds
catena-Poly[[[aqua(1,10-phenanthroline-κ2N,N′)cadmium(II)]-μ-pyridine-2,3-dicarboxylato-κ4N,O2:O3,O3′] dihydrate]
aDepartment of Chemical Engineering, Wuhan University of Science and Engineering, Wuhan 430073, People's Republic of China, and bCollege of Chemistry and Molecular Science, Wuhan University, Wuhan 430072, People's Republic of China
*Correspondence e-mail: limwuse@163.com
The title complex, {[Cd(C7H3NO4)(C12H8N2)(H2O)]·2H2O}n, is a one-dimensional coordination polymer, wherein the Cd atom is seven-coordinated by two 1,10-phenanthroline N atoms, one N and three O atoms from two different pyridine-2,3-dicarboxylate ligands, and one water molecule. It is further extended to a two-dimensional layer structure by hydrogen bonds and π–π stacking interactions [centroid-centroid distances of 3.560 (2) and 3.666 (2) Å]. There is a C4 water chain in the structure whose repeat unit contains four water molecules with O⋯O distances in the range 2.748 (3)–2.795 (4) Å. One of the two H atoms of each water of hydration is statistically distributed over two positions with equal occupancy.
Related literature
For potential applications of metal–organic coordination polymers, see: Moulton & Zaworotko (2001). For related structures, see: Gutschke et al. (1995); Li et al. (2006); Yu et al. (2004). For the structure of ice, see: Eisenberg & Kauzmann (1969).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and DIAMOND (Brandenburg, 1999); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
Supporting information
10.1107/S1600536808037203/pv2111sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808037203/pv2111Isup2.hkl
CdO (0.05 mmol), 1,10-phenanthroline (0.05 mmol) and pyridine 2,3-dicarboxylic acid (0.10 mmol) were added into 1 ml water and stirred for 5 min in air, then transferred to a closed container. After reacting at 353 K for 7 days, the mixture was cooled to room temperature at a rate of 5 K/h. Colorless crystals suitable for X-ray analysis were obtained.
All H atoms attached to C atoms of were fixed geometrically and treated as riding with C—H = 0.93 Å with Uiso(H) = 1.5Ueq(parent atom). Hydrogen atoms of water molecules were located in difference Fourier maps and included in the subsequent
using restraints (O—H = 0.85 (1) Å) with Uiso(H) = 1.5Ueq(O). The two hydrogen atoms were statistically distributed over two positions each (H2W2 and H3W2, H2W3 and H3W3) with occupation factors of 0.50.Data collection: SMART (Bruker, 2001); cell
SMART (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and DIAMOND (Brandenburg, 1999); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The coordination environment of Cd in (I) with the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level; hydrogen atoms were omitted for clarity. Symmetry codes: a = x - 1, y, z; b = x + 1, y, z. | |
Fig. 2. Unit cell packing of (I) showing (one-dimensional) chain-like structure along the a-axis; hydrogen bonds have been shown by dotted lines. |
[Cd(C7H3NO4)(C12H8N2)(H2O)]·2H2O | Z = 2 |
Mr = 511.76 | F(000) = 512 |
Triclinic, P1 | Dx = 1.795 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.8154 (5) Å | Cell parameters from 4951 reflections |
b = 10.5854 (7) Å | θ = 2.3–29.6° |
c = 13.0681 (8) Å | µ = 1.20 mm−1 |
α = 70.934 (1)° | T = 293 K |
β = 77.940 (1)° | Rod-like, colorless |
γ = 68.698 (1)° | 0.40 × 0.16 × 0.15 mm |
V = 946.98 (10) Å3 |
Bruker SMART CCD area-detector diffractometer | 4194 independent reflections |
Radiation source: fine-focus sealed tube | 3979 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.012 |
ϕ and ω scans | θmax = 27.5°, θmin = 2.9° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −10→10 |
Tmin = 0.645, Tmax = 0.840 | k = −13→13 |
6124 measured reflections | l = −16→14 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.019 | H-atom parameters constrained |
wR(F2) = 0.048 | w = 1/[σ2(Fo2) + (0.0181P)2 + 0.4298P] where P = (Fo2 + 2Fc2)/3 |
S = 1.08 | (Δ/σ)max = 0.001 |
4194 reflections | Δρmax = 0.28 e Å−3 |
272 parameters | Δρmin = −0.27 e Å−3 |
8 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0051 (5) |
[Cd(C7H3NO4)(C12H8N2)(H2O)]·2H2O | γ = 68.698 (1)° |
Mr = 511.76 | V = 946.98 (10) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.8154 (5) Å | Mo Kα radiation |
b = 10.5854 (7) Å | µ = 1.20 mm−1 |
c = 13.0681 (8) Å | T = 293 K |
α = 70.934 (1)° | 0.40 × 0.16 × 0.15 mm |
β = 77.940 (1)° |
Bruker SMART CCD area-detector diffractometer | 4194 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 3979 reflections with I > 2σ(I) |
Tmin = 0.645, Tmax = 0.840 | Rint = 0.012 |
6124 measured reflections |
R[F2 > 2σ(F2)] = 0.019 | 8 restraints |
wR(F2) = 0.048 | H-atom parameters constrained |
S = 1.08 | Δρmax = 0.28 e Å−3 |
4194 reflections | Δρmin = −0.27 e Å−3 |
272 parameters |
Experimental. Elemental analysis. Cacld. for C19H17CdN3O7: C, 44.55; H, 3.35; N, 8.21; Found: C, 44.05; H, 3.44; N, 8.53. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Cd1 | 0.351199 (16) | 0.150242 (13) | 0.791379 (10) | 0.02558 (5) | |
O1 | 0.03910 (18) | 0.25289 (13) | 0.83701 (12) | 0.0341 (3) | |
O1W | 0.3973 (2) | 0.23034 (15) | 0.92673 (11) | 0.0386 (3) | |
H1W1 | 0.3765 | 0.1750 | 0.9897 | 0.046* | |
H2W1 | 0.5091 | 0.2167 | 0.9178 | 0.046* | |
O2 | −0.23661 (17) | 0.22382 (14) | 0.87797 (12) | 0.0347 (3) | |
O3 | −0.39081 (19) | −0.04132 (16) | 0.87081 (13) | 0.0444 (4) | |
O4 | −0.3121 (2) | 0.10668 (15) | 0.72263 (12) | 0.0431 (3) | |
N1 | 0.2029 (2) | −0.02383 (15) | 0.85619 (12) | 0.0271 (3) | |
N2 | 0.2943 (2) | 0.15794 (18) | 0.61441 (14) | 0.0370 (4) | |
N3 | 0.3212 (2) | 0.37684 (16) | 0.67259 (13) | 0.0325 (3) | |
C1 | 0.0212 (2) | 0.03040 (17) | 0.84658 (13) | 0.0228 (3) | |
C2 | −0.0784 (2) | −0.04976 (17) | 0.83637 (13) | 0.0242 (3) | |
C3 | 0.0120 (3) | −0.19266 (19) | 0.84791 (15) | 0.0311 (4) | |
H3 | −0.0519 | −0.2500 | 0.8448 | 0.037* | |
C4 | 0.1965 (3) | −0.24943 (19) | 0.86391 (16) | 0.0336 (4) | |
H4 | 0.2575 | −0.3455 | 0.8740 | 0.040* | |
C5 | 0.2886 (3) | −0.16083 (19) | 0.86460 (16) | 0.0319 (4) | |
H5 | 0.4147 | −0.1976 | 0.8711 | 0.038* | |
C6 | −0.0676 (2) | 0.18204 (17) | 0.85371 (13) | 0.0240 (3) | |
C7 | −0.2739 (2) | 0.01160 (19) | 0.80796 (15) | 0.0286 (4) | |
C8 | 0.2799 (4) | 0.0538 (3) | 0.5853 (2) | 0.0539 (6) | |
H8 | 0.2953 | −0.0333 | 0.6367 | 0.065* | |
C9 | 0.2429 (4) | 0.0683 (4) | 0.4814 (2) | 0.0711 (8) | |
H9 | 0.2360 | −0.0079 | 0.4638 | 0.085* | |
C10 | 0.2171 (4) | 0.1952 (4) | 0.4069 (2) | 0.0715 (9) | |
H10 | 0.1922 | 0.2067 | 0.3373 | 0.086* | |
C11 | 0.2277 (3) | 0.3097 (3) | 0.43373 (18) | 0.0540 (6) | |
C12 | 0.2682 (3) | 0.2858 (2) | 0.54009 (15) | 0.0371 (4) | |
C13 | 0.2814 (3) | 0.4003 (2) | 0.57072 (15) | 0.0353 (4) | |
C14 | 0.2530 (3) | 0.5338 (2) | 0.49409 (18) | 0.0483 (6) | |
C15 | 0.2690 (4) | 0.6423 (2) | 0.5264 (2) | 0.0581 (7) | |
H15 | 0.2527 | 0.7313 | 0.4776 | 0.070* | |
C16 | 0.3084 (4) | 0.6176 (2) | 0.6286 (2) | 0.0572 (7) | |
H16 | 0.3187 | 0.6892 | 0.6509 | 0.069* | |
C17 | 0.3331 (3) | 0.4828 (2) | 0.70002 (19) | 0.0446 (5) | |
H17 | 0.3592 | 0.4667 | 0.7703 | 0.054* | |
C18 | 0.1968 (4) | 0.4480 (4) | 0.3597 (2) | 0.0708 (9) | |
H18 | 0.1669 | 0.4643 | 0.2903 | 0.085* | |
C19 | 0.2102 (4) | 0.5535 (4) | 0.3882 (2) | 0.0674 (8) | |
H19 | 0.1912 | 0.6418 | 0.3380 | 0.081* | |
O2W | 0.3981 (2) | 0.49790 (17) | 0.09955 (14) | 0.0559 (4) | |
H2W2 | 0.3059 | 0.4845 | 0.0842 | 0.067* | 0.50 |
H1W2 | 0.3589 | 0.5781 | 0.1080 | 0.067* | |
H3W2 | 0.4562 | 0.5171 | 0.0376 | 0.067* | 0.50 |
O3W | 0.0437 (3) | 0.49496 (17) | 0.09995 (15) | 0.0593 (5) | |
H1W3 | −0.0028 | 0.5736 | 0.1119 | 0.071* | |
H2W3 | −0.0031 | 0.4996 | 0.0465 | 0.071* | 0.50 |
H3W3 | 0.1599 | 0.4814 | 0.0833 | 0.071* | 0.50 |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cd1 | 0.02151 (8) | 0.02702 (8) | 0.02817 (8) | −0.00974 (5) | −0.00549 (5) | −0.00348 (5) |
O1 | 0.0248 (7) | 0.0268 (6) | 0.0536 (8) | −0.0105 (5) | −0.0005 (6) | −0.0146 (6) |
O1W | 0.0330 (7) | 0.0508 (8) | 0.0362 (7) | −0.0193 (6) | −0.0036 (6) | −0.0105 (6) |
O2 | 0.0216 (7) | 0.0326 (7) | 0.0505 (8) | −0.0084 (5) | 0.0026 (6) | −0.0164 (6) |
O3 | 0.0263 (7) | 0.0505 (9) | 0.0554 (9) | −0.0196 (7) | −0.0050 (6) | −0.0044 (7) |
O4 | 0.0384 (8) | 0.0416 (8) | 0.0443 (8) | −0.0102 (7) | −0.0183 (6) | 0.0002 (6) |
N1 | 0.0205 (7) | 0.0260 (7) | 0.0348 (8) | −0.0076 (6) | −0.0066 (6) | −0.0058 (6) |
N2 | 0.0356 (9) | 0.0441 (9) | 0.0339 (9) | −0.0136 (7) | −0.0041 (7) | −0.0127 (7) |
N3 | 0.0307 (8) | 0.0316 (8) | 0.0301 (8) | −0.0100 (7) | 0.0001 (6) | −0.0041 (6) |
C1 | 0.0217 (8) | 0.0235 (8) | 0.0225 (8) | −0.0084 (6) | −0.0024 (6) | −0.0037 (6) |
C2 | 0.0229 (8) | 0.0242 (8) | 0.0252 (8) | −0.0087 (7) | −0.0041 (6) | −0.0040 (6) |
C3 | 0.0324 (10) | 0.0255 (8) | 0.0387 (10) | −0.0129 (7) | −0.0085 (8) | −0.0057 (7) |
C4 | 0.0336 (10) | 0.0225 (8) | 0.0405 (10) | −0.0038 (7) | −0.0093 (8) | −0.0058 (7) |
C5 | 0.0233 (9) | 0.0284 (9) | 0.0404 (10) | −0.0038 (7) | −0.0097 (7) | −0.0057 (8) |
C6 | 0.0240 (8) | 0.0245 (8) | 0.0243 (8) | −0.0090 (7) | −0.0039 (6) | −0.0053 (6) |
C7 | 0.0241 (9) | 0.0285 (9) | 0.0380 (10) | −0.0088 (7) | −0.0069 (7) | −0.0126 (7) |
C8 | 0.0603 (16) | 0.0619 (15) | 0.0513 (14) | −0.0235 (13) | −0.0057 (11) | −0.0264 (12) |
C9 | 0.078 (2) | 0.097 (2) | 0.0637 (18) | −0.0357 (18) | −0.0071 (15) | −0.0462 (18) |
C10 | 0.0657 (18) | 0.123 (3) | 0.0417 (14) | −0.0371 (18) | −0.0068 (13) | −0.0351 (17) |
C11 | 0.0397 (13) | 0.0903 (19) | 0.0300 (11) | −0.0203 (12) | −0.0050 (9) | −0.0136 (12) |
C12 | 0.0250 (9) | 0.0547 (12) | 0.0268 (9) | −0.0103 (9) | −0.0025 (7) | −0.0077 (8) |
C13 | 0.0230 (9) | 0.0405 (10) | 0.0294 (9) | −0.0057 (8) | 0.0011 (7) | −0.0003 (8) |
C14 | 0.0336 (11) | 0.0488 (13) | 0.0380 (11) | −0.0065 (10) | 0.0012 (9) | 0.0092 (9) |
C15 | 0.0528 (15) | 0.0359 (12) | 0.0580 (15) | −0.0093 (11) | 0.0093 (12) | 0.0082 (10) |
C16 | 0.0682 (17) | 0.0346 (11) | 0.0593 (15) | −0.0195 (11) | 0.0141 (13) | −0.0098 (11) |
C17 | 0.0519 (14) | 0.0382 (11) | 0.0418 (12) | −0.0191 (10) | 0.0054 (10) | −0.0093 (9) |
C18 | 0.0593 (17) | 0.111 (3) | 0.0266 (11) | −0.0262 (17) | −0.0137 (11) | 0.0059 (14) |
C19 | 0.0535 (16) | 0.080 (2) | 0.0391 (13) | −0.0158 (14) | −0.0086 (11) | 0.0176 (13) |
O2W | 0.0545 (10) | 0.0439 (9) | 0.0604 (11) | −0.0030 (8) | −0.0024 (8) | −0.0191 (8) |
O3W | 0.0714 (12) | 0.0408 (9) | 0.0740 (12) | −0.0219 (8) | −0.0031 (10) | −0.0247 (8) |
Cd1—O1 | 2.3185 (13) | C4—H4 | 0.9300 |
Cd1—O1W | 2.3336 (14) | C5—H5 | 0.9300 |
Cd1—N3 | 2.3513 (15) | C8—C9 | 1.395 (4) |
Cd1—N1 | 2.3616 (14) | C8—H8 | 0.9300 |
Cd1—O3i | 2.4049 (15) | C9—C10 | 1.351 (5) |
Cd1—N2 | 2.4151 (16) | C9—H9 | 0.9300 |
Cd1—O4i | 2.5189 (16) | C10—C11 | 1.400 (4) |
O1—C6 | 1.256 (2) | C10—H10 | 0.9300 |
O1W—H1W1 | 0.8630 | C11—C12 | 1.411 (3) |
O1W—H2W1 | 0.8216 | C11—C18 | 1.433 (4) |
O2—C6 | 1.238 (2) | C12—C13 | 1.437 (3) |
O3—C7 | 1.257 (2) | C13—C14 | 1.410 (3) |
O3—Cd1ii | 2.4049 (15) | C14—C15 | 1.399 (4) |
O4—C7 | 1.238 (2) | C14—C19 | 1.422 (4) |
O4—Cd1ii | 2.5189 (16) | C15—C16 | 1.353 (4) |
N1—C5 | 1.336 (2) | C15—H15 | 0.9300 |
N1—C1 | 1.341 (2) | C16—C17 | 1.396 (3) |
N2—C8 | 1.324 (3) | C16—H16 | 0.9300 |
N2—C12 | 1.356 (3) | C17—H17 | 0.9300 |
N3—C17 | 1.322 (3) | C18—C19 | 1.331 (5) |
N3—C13 | 1.353 (3) | C18—H18 | 0.9300 |
C1—C2 | 1.393 (2) | C19—H19 | 0.9300 |
C1—C6 | 1.526 (2) | O2W—H2W2 | 0.8556 |
C2—C3 | 1.389 (2) | O2W—H1W2 | 0.8277 |
C2—C7 | 1.501 (2) | O2W—H3W2 | 0.8415 |
C3—C4 | 1.377 (3) | O3W—H1W3 | 0.8306 |
C3—H3 | 0.9300 | O3W—H2W3 | 0.8344 |
C4—C5 | 1.377 (3) | O3W—H3W3 | 0.8577 |
O1—Cd1—O1W | 85.50 (5) | C4—C5—H5 | 118.9 |
O1—Cd1—N3 | 82.48 (5) | O2—C6—O1 | 125.52 (16) |
O1W—Cd1—N3 | 87.94 (5) | O2—C6—C1 | 117.87 (15) |
O1—Cd1—N1 | 70.02 (5) | O1—C6—C1 | 116.58 (15) |
O1W—Cd1—N1 | 114.38 (5) | O4—C7—O3 | 122.84 (17) |
N3—Cd1—N1 | 142.12 (5) | O4—C7—C2 | 119.52 (17) |
O1—Cd1—O3i | 139.09 (5) | O3—C7—C2 | 117.56 (16) |
O1W—Cd1—O3i | 78.30 (5) | N2—C8—C9 | 123.3 (3) |
N3—Cd1—O3i | 133.35 (5) | N2—C8—H8 | 118.4 |
N1—Cd1—O3i | 82.89 (5) | C9—C8—H8 | 118.4 |
O1—Cd1—N2 | 91.39 (5) | C10—C9—C8 | 118.7 (3) |
O1W—Cd1—N2 | 158.39 (6) | C10—C9—H9 | 120.6 |
N3—Cd1—N2 | 70.46 (6) | C8—C9—H9 | 120.6 |
N1—Cd1—N2 | 84.31 (6) | C9—C10—C11 | 120.5 (2) |
O3i—Cd1—N2 | 116.44 (6) | C9—C10—H10 | 119.8 |
O1—Cd1—O4i | 164.61 (5) | C11—C10—H10 | 119.8 |
O1W—Cd1—O4i | 88.95 (5) | C10—C11—C12 | 117.3 (2) |
N3—Cd1—O4i | 82.98 (5) | C10—C11—C18 | 123.3 (2) |
N1—Cd1—O4i | 125.23 (5) | C12—C11—C18 | 119.3 (3) |
O3i—Cd1—O4i | 52.80 (5) | N2—C12—C11 | 121.9 (2) |
N2—Cd1—O4i | 88.50 (5) | N2—C12—C13 | 119.02 (17) |
C6—O1—Cd1 | 118.77 (11) | C11—C12—C13 | 119.1 (2) |
Cd1—O1W—H1W1 | 109.3 | N3—C13—C14 | 121.7 (2) |
Cd1—O1W—H2W1 | 103.1 | N3—C13—C12 | 118.94 (17) |
H1W1—O1W—H2W1 | 105.8 | C14—C13—C12 | 119.32 (19) |
C7—O3—Cd1ii | 93.36 (11) | C15—C14—C13 | 117.7 (2) |
C7—O4—Cd1ii | 88.54 (12) | C15—C14—C19 | 122.6 (2) |
C5—N1—C1 | 119.41 (15) | C13—C14—C19 | 119.7 (3) |
C5—N1—Cd1 | 124.26 (12) | C16—C15—C14 | 119.9 (2) |
C1—N1—Cd1 | 112.35 (11) | C16—C15—H15 | 120.0 |
C8—N2—C12 | 118.31 (19) | C14—C15—H15 | 120.0 |
C8—N2—Cd1 | 127.04 (16) | C15—C16—C17 | 118.9 (2) |
C12—N2—Cd1 | 114.59 (13) | C15—C16—H16 | 120.5 |
C17—N3—C13 | 118.51 (18) | C17—C16—H16 | 120.5 |
C17—N3—Cd1 | 124.53 (14) | N3—C17—C16 | 123.2 (2) |
C13—N3—Cd1 | 116.90 (13) | N3—C17—H17 | 118.4 |
N1—C1—C2 | 121.67 (15) | C16—C17—H17 | 118.4 |
N1—C1—C6 | 115.02 (14) | C19—C18—C11 | 121.4 (2) |
C2—C1—C6 | 123.23 (15) | C19—C18—H18 | 119.3 |
C3—C2—C1 | 117.80 (16) | C11—C18—H18 | 119.3 |
C3—C2—C7 | 118.66 (15) | C18—C19—C14 | 121.2 (2) |
C1—C2—C7 | 123.46 (15) | C18—C19—H19 | 119.4 |
C4—C3—C2 | 120.00 (17) | C14—C19—H19 | 119.4 |
C4—C3—H3 | 120.0 | H2W2—O2W—H1W2 | 105.8 |
C2—C3—H3 | 120.0 | H2W2—O2W—H3W2 | 101.4 |
C3—C4—C5 | 118.55 (16) | H1W2—O2W—H3W2 | 97.7 |
C3—C4—H4 | 120.7 | H1W3—O3W—H2W3 | 106.6 |
C5—C4—H4 | 120.7 | H1W3—O3W—H3W3 | 107.2 |
N1—C5—C4 | 122.22 (17) | H2W3—O3W—H3W3 | 109.5 |
N1—C5—H5 | 118.9 | ||
O1W—Cd1—O1—C6 | −131.03 (14) | Cd1—N1—C5—C4 | −155.90 (15) |
N3—Cd1—O1—C6 | 140.47 (14) | C3—C4—C5—N1 | 3.7 (3) |
N1—Cd1—O1—C6 | −13.05 (13) | Cd1—O1—C6—O2 | −179.59 (14) |
O3i—Cd1—O1—C6 | −64.70 (16) | Cd1—O1—C6—C1 | 2.4 (2) |
N2—Cd1—O1—C6 | 70.38 (14) | N1—C1—C6—O2 | −158.83 (16) |
O4i—Cd1—O1—C6 | 159.78 (16) | C2—C1—C6—O2 | 18.1 (2) |
O1—Cd1—N1—C5 | 179.92 (16) | N1—C1—C6—O1 | 19.4 (2) |
O1W—Cd1—N1—C5 | −104.93 (15) | C2—C1—C6—O1 | −163.76 (16) |
N3—Cd1—N1—C5 | 133.86 (14) | Cd1ii—O4—C7—O3 | 15.87 (19) |
O3i—Cd1—N1—C5 | −31.25 (15) | Cd1ii—O4—C7—C2 | −167.34 (15) |
N2—Cd1—N1—C5 | 86.36 (15) | Cd1ii—O3—C7—O4 | −16.7 (2) |
O4i—Cd1—N1—C5 | 2.24 (17) | Cd1ii—O3—C7—C2 | 166.48 (13) |
O1—Cd1—N1—C1 | 22.61 (11) | C3—C2—C7—O4 | −119.5 (2) |
O1W—Cd1—N1—C1 | 97.76 (12) | C1—C2—C7—O4 | 57.2 (3) |
N3—Cd1—N1—C1 | −23.44 (17) | C3—C2—C7—O3 | 57.5 (2) |
O3i—Cd1—N1—C1 | 171.45 (13) | C1—C2—C7—O3 | −125.86 (19) |
N2—Cd1—N1—C1 | −70.95 (12) | C12—N2—C8—C9 | 1.3 (4) |
O4i—Cd1—N1—C1 | −155.06 (11) | Cd1—N2—C8—C9 | 178.6 (2) |
O1—Cd1—N2—C8 | −98.04 (19) | N2—C8—C9—C10 | −1.2 (4) |
O1W—Cd1—N2—C8 | −179.31 (17) | C8—C9—C10—C11 | 0.0 (5) |
N3—Cd1—N2—C8 | −179.6 (2) | C9—C10—C11—C12 | 0.8 (4) |
N1—Cd1—N2—C8 | −28.28 (19) | C9—C10—C11—C18 | −178.2 (3) |
O3i—Cd1—N2—C8 | 50.9 (2) | C8—N2—C12—C11 | −0.4 (3) |
O4i—Cd1—N2—C8 | 97.4 (2) | Cd1—N2—C12—C11 | −178.00 (16) |
O1—Cd1—N2—C12 | 79.33 (14) | C8—N2—C12—C13 | 179.3 (2) |
O1W—Cd1—N2—C12 | −1.9 (2) | Cd1—N2—C12—C13 | 1.7 (2) |
N3—Cd1—N2—C12 | −2.19 (13) | C10—C11—C12—N2 | −0.6 (3) |
N1—Cd1—N2—C12 | 149.10 (14) | C18—C11—C12—N2 | 178.4 (2) |
O3i—Cd1—N2—C12 | −131.76 (13) | C10—C11—C12—C13 | 179.6 (2) |
O4i—Cd1—N2—C12 | −85.28 (14) | C18—C11—C12—C13 | −1.3 (3) |
O1—Cd1—N3—C17 | 85.52 (17) | C17—N3—C13—C14 | 0.1 (3) |
O1W—Cd1—N3—C17 | −0.21 (17) | Cd1—N3—C13—C14 | 177.42 (15) |
N1—Cd1—N3—C17 | 128.57 (16) | C17—N3—C13—C12 | 179.96 (18) |
O3i—Cd1—N3—C17 | −71.96 (19) | Cd1—N3—C13—C12 | −2.7 (2) |
N2—Cd1—N3—C17 | 179.69 (18) | N2—C12—C13—N3 | 0.6 (3) |
O4i—Cd1—N3—C17 | −89.41 (17) | C11—C12—C13—N3 | −179.66 (18) |
O1—Cd1—N3—C13 | −91.62 (13) | N2—C12—C13—C14 | −179.52 (18) |
O1W—Cd1—N3—C13 | −177.35 (13) | C11—C12—C13—C14 | 0.2 (3) |
N1—Cd1—N3—C13 | −48.57 (17) | N3—C13—C14—C15 | 0.6 (3) |
O3i—Cd1—N3—C13 | 110.90 (14) | C12—C13—C14—C15 | −179.3 (2) |
N2—Cd1—N3—C13 | 2.56 (13) | N3—C13—C14—C19 | −179.6 (2) |
O4i—Cd1—N3—C13 | 93.46 (13) | C12—C13—C14—C19 | 0.6 (3) |
C5—N1—C1—C2 | −5.2 (3) | C13—C14—C15—C16 | −0.8 (4) |
Cd1—N1—C1—C2 | 153.32 (13) | C19—C14—C15—C16 | 179.4 (2) |
C5—N1—C1—C6 | 171.73 (16) | C14—C15—C16—C17 | 0.3 (4) |
Cd1—N1—C1—C6 | −29.74 (17) | C13—N3—C17—C16 | −0.6 (3) |
N1—C1—C2—C3 | 6.6 (3) | Cd1—N3—C17—C16 | −177.74 (18) |
C6—C1—C2—C3 | −170.04 (16) | C15—C16—C17—N3 | 0.5 (4) |
N1—C1—C2—C7 | −170.04 (16) | C10—C11—C18—C19 | −179.3 (3) |
C6—C1—C2—C7 | 13.3 (3) | C12—C11—C18—C19 | 1.7 (4) |
C1—C2—C3—C4 | −2.9 (3) | C11—C18—C19—C14 | −1.0 (4) |
C7—C2—C3—C4 | 173.96 (17) | C15—C14—C19—C18 | 179.6 (3) |
C2—C3—C4—C5 | −2.0 (3) | C13—C14—C19—C18 | −0.2 (4) |
C1—N1—C5—C4 | −0.1 (3) |
Symmetry codes: (i) x+1, y, z; (ii) x−1, y, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O3W—H3W3···O2W | 0.86 | 1.99 | 2.780 (3) | 152 |
O3W—H2W3···O3Wiii | 0.83 | 1.98 | 2.795 (4) | 164 |
O3W—H1W3···O1iv | 0.83 | 2.06 | 2.860 (2) | 161 |
O2W—H1W2···O2iv | 0.83 | 2.02 | 2.840 (2) | 173 |
O2W—H3W2···O2Wv | 0.84 | 1.93 | 2.748 (3) | 163 |
O2W—H2W2···O3W | 0.86 | 1.98 | 2.780 (3) | 155 |
O1W—H2W1···O2i | 0.82 | 1.97 | 2.7784 (19) | 168 |
O1W—H1W1···O3vi | 0.86 | 1.90 | 2.751 (2) | 167 |
Symmetry codes: (i) x+1, y, z; (iii) −x, −y+1, −z; (iv) −x, −y+1, −z+1; (v) −x+1, −y+1, −z; (vi) −x, −y, −z+2. |
Experimental details
Crystal data | |
Chemical formula | [Cd(C7H3NO4)(C12H8N2)(H2O)]·2H2O |
Mr | 511.76 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 7.8154 (5), 10.5854 (7), 13.0681 (8) |
α, β, γ (°) | 70.934 (1), 77.940 (1), 68.698 (1) |
V (Å3) | 946.98 (10) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.20 |
Crystal size (mm) | 0.40 × 0.16 × 0.15 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.645, 0.840 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6124, 4194, 3979 |
Rint | 0.012 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.019, 0.048, 1.08 |
No. of reflections | 4194 |
No. of parameters | 272 |
No. of restraints | 8 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.28, −0.27 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997) and DIAMOND (Brandenburg, 1999), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O3W—H3W3···O2W | 0.86 | 1.99 | 2.780 (3) | 152.3 |
O3W—H2W3···O3Wi | 0.83 | 1.98 | 2.795 (4) | 164.1 |
O3W—H1W3···O1ii | 0.83 | 2.06 | 2.860 (2) | 161.4 |
O2W—H1W2···O2ii | 0.83 | 2.02 | 2.840 (2) | 173.4 |
O2W—H3W2···O2Wiii | 0.84 | 1.93 | 2.748 (3) | 162.8 |
O2W—H2W2···O3W | 0.86 | 1.98 | 2.780 (3) | 154.7 |
O1W—H2W1···O2iv | 0.82 | 1.97 | 2.7784 (19) | 168.4 |
O1W—H1W1···O3v | 0.86 | 1.90 | 2.751 (2) | 166.7 |
Symmetry codes: (i) −x, −y+1, −z; (ii) −x, −y+1, −z+1; (iii) −x+1, −y+1, −z; (iv) x+1, y, z; (v) −x, −y, −z+2. |
Acknowledgements
This work was financially supported by the National Natural Science Foundation of China (grant No. 20671074) and the Foundation of the Education Department of Hubei Province (No. Q20081705).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Metal-organic coordination polymers have been of great interest due to their intriguing potential applications, such as catalysis, magnetism, electronic and chemical separation (Moulton & Zaworotko, 2001). Multidentate N– or O-donor ligands, such as pyridine- or imidazole- (di)carboxylic acids, have drawn extensive attention in the construction of coordination polymers or metal-organic formworks (MOF). For example, pyridine or imidazole dicarboxyic acid ligands, including pyridine-2,6-, 2,5- or 3,4-dicarboxylic and imidazole-3,4-dicarboxylic acids, have been extensively employed in the construction of such metal-organic formworks. Comparing with other pyridine-dicarboxylic acids, pyridine-2,3-dicarboxylic acid (2,3-pydc) has been rarely used as a linkage ligand (Gutschke et al., 1995; Yu et al., 2004; Li et al., 2006). We have synthesized a novel one-dimensional (one-dimensional) coordination polymer based on 2,3-pydc, [Cd(2,3-pydc)(H2O)(phen).2H2O]n (phen = 1,10-phenanthroline), (I), the crystal structure of which is presented in this article.
The title complex is a one-dimensional chain-like coordination polymer. In the structure of the title compound (Fig. 1), the Cd ion is seven-coordinated with two N atoms from phen, one N and three O atoms from two different pyridine-2,3-dicarboxylate and a water molecule. The 2,3-pydc affords four coordination atoms to connect two Cd ions, one as chelating bidentate through the N atom and one O atom of carboxylate in 2-position, the other with two O atoms of carboxylate in 3-position. Thus, complex (I) illustrates a one-dimensional chain structure along a axis, as shown in Fig. 2. Two adjacent chains band together by a series of hydrogen bonds involving water and carbonyl O-atoms (details are given in Table 1), π-π interaction of 1,10-phenanthroline with the shortest distance between the centroids of C11—C14/C18/C19 rings being 3.560 (2) Å and the shortest distance between the centroids of N3/C13—C17 rings are 3.666 (2) Å, thus resulting in a two-dimensional supramolecular structure. The structure also displays a short C6—O2···π(Cg(1)) interaction with a perpendicular distance between O2 and the centroid of Cg(1) being 3.562 (2) Å.
It is also worthwhile to note that there is a C4 water chain in (I), whose repeating unit contains four water molecules with O—O distances 2.750 (4) 2.782 (3), and 2.798 (4) Å (average distance = 2.777 Å), which are all close to the corresponding distance of O—O in the ice Ic (2.75 Å) and Ih (2.759 Å) determined at 143 and 183 K, respectively (Eisenberg & Kauzmann, 1969). Moreover, each water molecule links to the host by the H-bonding interaction between water of hydration and coordination water molecules. Water molecule can participate in four hydrogen bonds in a tetrahedral arrangement with two hydrogen atoms and two lone pairs, but also frequently show 3-coordinate configurations, just as in (I).