organic compounds
4-(Dimethylamino)benzaldehyde 4-ethylthiosemicarbazone
aSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: email: abdussalam@usm.my
The title thiosemicarbazone derivative, C12H18N4S, features intramolecular N—H⋯N and C—H⋯S hydrogen bonds which generate S(5) ring motifs. The dihedral angle between the benzene ring and the thiourea unit is 6.30 (6)° indicating planarity in the molecule. Intermolecular N—H⋯S hydrogen bonds generate dimers with an R22(8) ring motif. The methyl group of the N-ethyl residue is disordered and was refined with site occupancies of 0.521 (5) and 0.479 (5).
Related literature
For details of hydrogen-bond motifs, see: Bernstein et al. (1995). For related structures and applications see: Beraldo et al. (2001); Kayed et al. (2008); Valdes-Martinez et al. (1990).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell APEX2; data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003).
Supporting information
10.1107/S1600536808037148/tk2323sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808037148/tk2323Isup2.hkl
To 4-ethyl-3-thiosemicarbazide (ca. 0.119 g, 1 mmol) dissolved in ethanol (10 ml) was added dropwise an ethanol solution (5 ml) of 4-dimethylaminobenzaldehyde (0.149 g, 1 mmol) with continuous stirring. The solution was heated on a water bath for few minutes until the solution became clear. After cooling to room temperature, yellow crystals of (I) appeared.
The N-bound H atoms were located from a difference Fourier map and refined freely. The remaining H were placed in their calculated positions in the riding model approximation with C–H 0.93–0.96 Å, and with U(H) set to 1.2–1.5 times Ueq(C). The presence of large peaks in the difference Fourier map near to the methyl group of (I) was suspected to be due to positional disorder of this fragment. The refined ratio of the site occupancy factors for the disorder parts were calculated to be 0.521 (5)/0.479 (5).
Data collection: APEX2 (Bruker, 2005); cell
APEX2 (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2003).C12H18N4S | F(000) = 536 |
Mr = 250.36 | Dx = 1.231 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 9949 reflections |
a = 9.3687 (2) Å | θ = 2.5–39.5° |
b = 14.1872 (3) Å | µ = 0.23 mm−1 |
c = 10.2318 (2) Å | T = 100 K |
β = 96.699 (1)° | Block, yellow |
V = 1350.68 (5) Å3 | 0.59 × 0.36 × 0.22 mm |
Z = 4 |
Bruker SMART APEXII CCD area-detector diffractometer | 6825 independent reflections |
Radiation source: fine-focus sealed tube | 5566 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.036 |
ϕ and ω scans | θmax = 37.0°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −15→13 |
Tmin = 0.879, Tmax = 0.953 | k = −24→20 |
30229 measured reflections | l = −15→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.119 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0651P)2 + 0.2126P] where P = (Fo2 + 2Fc2)/3 |
6825 reflections | (Δ/σ)max = 0.001 |
176 parameters | Δρmax = 0.74 e Å−3 |
0 restraints | Δρmin = −0.39 e Å−3 |
C12H18N4S | V = 1350.68 (5) Å3 |
Mr = 250.36 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 9.3687 (2) Å | µ = 0.23 mm−1 |
b = 14.1872 (3) Å | T = 100 K |
c = 10.2318 (2) Å | 0.59 × 0.36 × 0.22 mm |
β = 96.699 (1)° |
Bruker SMART APEXII CCD area-detector diffractometer | 6825 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 5566 reflections with I > 2σ(I) |
Tmin = 0.879, Tmax = 0.953 | Rint = 0.036 |
30229 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | 0 restraints |
wR(F2) = 0.119 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.74 e Å−3 |
6825 reflections | Δρmin = −0.39 e Å−3 |
176 parameters |
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
S1 | 0.16244 (2) | 0.114147 (15) | −0.039117 (18) | 0.01984 (6) | |
N1 | −0.30894 (9) | 0.10562 (6) | 0.82869 (8) | 0.02457 (15) | |
N2 | −0.01025 (7) | 0.10572 (5) | 0.29168 (6) | 0.01690 (12) | |
N3 | 0.02454 (7) | 0.08428 (5) | 0.16770 (6) | 0.01731 (12) | |
N4 | 0.18487 (7) | 0.20579 (5) | 0.19197 (7) | 0.01837 (12) | |
C1 | −0.09174 (8) | 0.13272 (6) | 0.55310 (7) | 0.01760 (13) | |
H1A | −0.0138 | 0.1680 | 0.5323 | 0.021* | |
C2 | −0.14161 (8) | 0.14561 (6) | 0.67363 (7) | 0.01834 (13) | |
H2A | −0.0977 | 0.1900 | 0.7319 | 0.022* | |
C3 | −0.25861 (8) | 0.09230 (6) | 0.70986 (7) | 0.01732 (13) | |
C4 | −0.32165 (9) | 0.02550 (6) | 0.61854 (8) | 0.01997 (14) | |
H4A | −0.3979 | −0.0113 | 0.6396 | 0.024* | |
C5 | −0.27073 (9) | 0.01429 (6) | 0.49756 (8) | 0.01935 (14) | |
H5A | −0.3142 | −0.0300 | 0.4388 | 0.023* | |
C6 | −0.15624 (8) | 0.06743 (5) | 0.46132 (7) | 0.01601 (12) | |
C7 | −0.10836 (8) | 0.05380 (6) | 0.33282 (7) | 0.01745 (13) | |
H7A | −0.1498 | 0.0062 | 0.2786 | 0.021* | |
C8 | 0.12430 (8) | 0.13664 (6) | 0.11598 (7) | 0.01551 (12) | |
C9 | 0.29288 (10) | 0.27026 (6) | 0.15428 (9) | 0.02484 (16) | |
H9A | 0.2867 | 0.3279 | 0.2024 | 0.030* | 0.521 (5) |
H9B | 0.2702 | 0.2848 | 0.0626 | 0.030* | 0.521 (5) |
H9C | 0.2877 | 0.3291 | 0.1999 | 0.030* | 0.479 (5) |
H9D | 0.2767 | 0.2823 | 0.0614 | 0.030* | 0.479 (5) |
C10A | 0.4427 (11) | 0.2356 (8) | 0.1674 (8) | 0.0361 (12) | 0.521 (5) |
H10A | 0.5045 | 0.2841 | 0.1403 | 0.054* | 0.521 (5) |
H10B | 0.4486 | 0.1810 | 0.1128 | 0.054* | 0.521 (5) |
H10C | 0.4724 | 0.2192 | 0.2575 | 0.054* | 0.521 (5) |
C10B | 0.4457 (14) | 0.2268 (10) | 0.1992 (9) | 0.0394 (15) | 0.479 (5) |
H10D | 0.4558 | 0.2160 | 0.2925 | 0.059* | 0.479 (5) |
H10E | 0.5188 | 0.2698 | 0.1782 | 0.059* | 0.479 (5) |
H10F | 0.4554 | 0.1681 | 0.1544 | 0.059* | 0.479 (5) |
C11 | −0.43497 (11) | 0.05588 (7) | 0.86103 (10) | 0.02942 (19) | |
H11A | −0.5107 | 0.0619 | 0.7898 | 0.044* | |
H11B | −0.4657 | 0.0823 | 0.9395 | 0.044* | |
H11C | −0.4121 | −0.0096 | 0.8753 | 0.044* | |
C12 | −0.24779 (10) | 0.17816 (8) | 0.91858 (9) | 0.02932 (19) | |
H12A | −0.1452 | 0.1710 | 0.9325 | 0.044* | |
H12B | −0.2864 | 0.1722 | 1.0011 | 0.044* | |
H12C | −0.2713 | 0.2392 | 0.8815 | 0.044* | |
H1N4 | 0.1570 (14) | 0.2111 (10) | 0.2711 (14) | 0.032 (3)* | |
H1N3 | −0.0171 (15) | 0.0353 (11) | 0.1243 (14) | 0.035 (4)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.02294 (10) | 0.02210 (11) | 0.01529 (9) | −0.00401 (7) | 0.00569 (6) | −0.00261 (6) |
N1 | 0.0315 (4) | 0.0243 (4) | 0.0202 (3) | −0.0016 (3) | 0.0121 (3) | −0.0011 (2) |
N2 | 0.0198 (3) | 0.0176 (3) | 0.0137 (2) | −0.0005 (2) | 0.0038 (2) | −0.0006 (2) |
N3 | 0.0206 (3) | 0.0178 (3) | 0.0141 (2) | −0.0036 (2) | 0.0043 (2) | −0.0018 (2) |
N4 | 0.0212 (3) | 0.0178 (3) | 0.0166 (3) | −0.0039 (2) | 0.0044 (2) | −0.0022 (2) |
C1 | 0.0179 (3) | 0.0185 (3) | 0.0166 (3) | −0.0026 (2) | 0.0028 (2) | −0.0005 (2) |
C2 | 0.0199 (3) | 0.0199 (3) | 0.0152 (3) | −0.0015 (3) | 0.0024 (2) | −0.0015 (2) |
C3 | 0.0205 (3) | 0.0157 (3) | 0.0166 (3) | 0.0026 (2) | 0.0057 (2) | 0.0018 (2) |
C4 | 0.0215 (3) | 0.0171 (3) | 0.0226 (3) | −0.0025 (3) | 0.0082 (3) | −0.0007 (3) |
C5 | 0.0213 (3) | 0.0167 (3) | 0.0208 (3) | −0.0040 (2) | 0.0060 (2) | −0.0031 (2) |
C6 | 0.0181 (3) | 0.0149 (3) | 0.0153 (3) | −0.0008 (2) | 0.0032 (2) | −0.0001 (2) |
C7 | 0.0199 (3) | 0.0168 (3) | 0.0160 (3) | −0.0013 (2) | 0.0034 (2) | −0.0013 (2) |
C8 | 0.0162 (3) | 0.0156 (3) | 0.0148 (3) | 0.0000 (2) | 0.0017 (2) | 0.0010 (2) |
C9 | 0.0294 (4) | 0.0199 (4) | 0.0269 (4) | −0.0092 (3) | 0.0107 (3) | −0.0057 (3) |
C10A | 0.0211 (12) | 0.032 (2) | 0.057 (3) | −0.0087 (13) | 0.011 (2) | −0.015 (2) |
C10B | 0.0265 (14) | 0.036 (2) | 0.057 (4) | −0.0113 (14) | 0.009 (3) | −0.011 (3) |
C11 | 0.0374 (5) | 0.0252 (4) | 0.0291 (4) | −0.0005 (4) | 0.0190 (4) | 0.0033 (3) |
C12 | 0.0275 (4) | 0.0409 (6) | 0.0199 (3) | 0.0028 (4) | 0.0037 (3) | −0.0083 (3) |
S1—C8 | 1.6971 (7) | C6—C7 | 1.4508 (10) |
N1—C3 | 1.3675 (10) | C7—H7A | 0.9300 |
N1—C11 | 1.4466 (12) | C9—C10A | 1.479 (10) |
N1—C12 | 1.4528 (13) | C9—C10B | 1.577 (13) |
N2—C7 | 1.2864 (10) | C9—H9A | 0.9600 |
N2—N3 | 1.3800 (9) | C9—H9B | 0.9600 |
N3—C8 | 1.3494 (10) | C9—H9C | 0.9600 |
N3—H1N3 | 0.890 (15) | C9—H9D | 0.9600 |
N4—C8 | 1.3365 (10) | C10A—H10A | 0.9600 |
N4—C9 | 1.4492 (11) | C10A—H10B | 0.9600 |
N4—H1N4 | 0.883 (14) | C10A—H10C | 0.9600 |
C1—C2 | 1.3810 (10) | C10B—H10D | 0.9600 |
C1—C6 | 1.4045 (11) | C10B—H10E | 0.9600 |
C1—H1A | 0.9300 | C10B—H10F | 0.9600 |
C2—C3 | 1.4162 (11) | C11—H11A | 0.9600 |
C2—H2A | 0.9300 | C11—H11B | 0.9600 |
C3—C4 | 1.4111 (12) | C11—H11C | 0.9600 |
C4—C5 | 1.3867 (11) | C12—H12A | 0.9600 |
C4—H4A | 0.9300 | C12—H12B | 0.9600 |
C5—C6 | 1.3961 (11) | C12—H12C | 0.9600 |
C5—H5A | 0.9300 | ||
C3—N1—C11 | 120.75 (8) | C10A—C9—H9A | 110.5 |
C3—N1—C12 | 120.62 (8) | C10B—C9—H9A | 106.9 |
C11—N1—C12 | 118.22 (7) | N4—C9—H9B | 108.3 |
C7—N2—N3 | 115.40 (7) | C10A—C9—H9B | 105.1 |
C8—N3—N2 | 119.20 (7) | C10B—C9—H9B | 117.3 |
C8—N3—H1N3 | 121.2 (9) | H9A—C9—H9B | 107.4 |
N2—N3—H1N3 | 119.6 (9) | N4—C9—H9C | 110.0 |
C8—N4—C9 | 124.80 (7) | C10A—C9—H9C | 110.3 |
C8—N4—H1N4 | 116.4 (9) | C10B—C9—H9C | 107.1 |
C9—N4—H1N4 | 118.7 (9) | H9B—C9—H9C | 105.7 |
C2—C1—C6 | 121.36 (7) | N4—C9—H9D | 110.0 |
C2—C1—H1A | 119.3 | C10A—C9—H9D | 100.8 |
C6—C1—H1A | 119.3 | C10B—C9—H9D | 113.0 |
C1—C2—C3 | 121.05 (7) | H9A—C9—H9D | 110.1 |
C1—C2—H2A | 119.5 | H9C—C9—H9D | 108.4 |
C3—C2—H2A | 119.5 | C9—C10A—H10A | 109.5 |
N1—C3—C4 | 121.35 (7) | C9—C10A—H10B | 109.5 |
N1—C3—C2 | 121.11 (7) | C9—C10A—H10C | 109.5 |
C4—C3—C2 | 117.53 (7) | C9—C10B—H10D | 109.5 |
C5—C4—C3 | 120.47 (7) | C9—C10B—H10E | 109.5 |
C5—C4—H4A | 119.8 | H10D—C10B—H10E | 109.5 |
C3—C4—H4A | 119.8 | C9—C10B—H10F | 109.5 |
C4—C5—C6 | 122.02 (7) | H10D—C10B—H10F | 109.5 |
C4—C5—H5A | 119.0 | H10E—C10B—H10F | 109.5 |
C6—C5—H5A | 119.0 | N1—C11—H11A | 109.5 |
C5—C6—C1 | 117.54 (7) | N1—C11—H11B | 109.5 |
C5—C6—C7 | 119.81 (7) | H11A—C11—H11B | 109.5 |
C1—C6—C7 | 122.65 (7) | N1—C11—H11C | 109.5 |
N2—C7—C6 | 121.90 (7) | H11A—C11—H11C | 109.5 |
N2—C7—H7A | 119.1 | H11B—C11—H11C | 109.5 |
C6—C7—H7A | 119.1 | N1—C12—H12A | 109.5 |
N4—C8—N3 | 116.26 (6) | N1—C12—H12B | 109.5 |
N4—C8—S1 | 124.10 (6) | H12A—C12—H12B | 109.5 |
N3—C8—S1 | 119.62 (6) | N1—C12—H12C | 109.5 |
N4—C9—C10A | 116.8 (4) | H12A—C12—H12C | 109.5 |
N4—C9—C10B | 108.3 (4) | H12B—C12—H12C | 109.5 |
N4—C9—H9A | 108.4 | ||
C7—N2—N3—C8 | 178.60 (7) | C4—C5—C6—C7 | −179.19 (8) |
C6—C1—C2—C3 | 0.93 (12) | C2—C1—C6—C5 | −1.47 (12) |
C11—N1—C3—C4 | −4.17 (13) | C2—C1—C6—C7 | 178.59 (8) |
C12—N1—C3—C4 | −176.68 (8) | N3—N2—C7—C6 | 179.78 (7) |
C11—N1—C3—C2 | 175.45 (8) | C5—C6—C7—N2 | 174.99 (8) |
C12—N1—C3—C2 | 2.93 (13) | C1—C6—C7—N2 | −5.08 (12) |
C1—C2—C3—N1 | −179.39 (8) | C9—N4—C8—N3 | −179.39 (8) |
C1—C2—C3—C4 | 0.24 (12) | C9—N4—C8—S1 | −1.06 (12) |
N1—C3—C4—C5 | 178.80 (8) | N2—N3—C8—N4 | 1.21 (11) |
C2—C3—C4—C5 | −0.82 (12) | N2—N3—C8—S1 | −177.20 (5) |
C3—C4—C5—C6 | 0.26 (13) | C8—N4—C9—C10A | −81.0 (4) |
C4—C5—C6—C1 | 0.88 (12) | C8—N4—C9—C10B | −90.9 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H1N3···S1i | 0.891 (15) | 2.613 (15) | 3.4910 (7) | 168.8 (12) |
N4—H1N4···N2 | 0.885 (14) | 2.193 (14) | 2.6140 (10) | 108.7 (11) |
C9—H9B···S1 | 0.96 | 2.78 | 3.1225 (9) | 102 |
Symmetry code: (i) −x, −y, −z. |
Experimental details
Crystal data | |
Chemical formula | C12H18N4S |
Mr | 250.36 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 9.3687 (2), 14.1872 (3), 10.2318 (2) |
β (°) | 96.699 (1) |
V (Å3) | 1350.68 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.23 |
Crystal size (mm) | 0.59 × 0.36 × 0.22 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.879, 0.953 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 30229, 6825, 5566 |
Rint | 0.036 |
(sin θ/λ)max (Å−1) | 0.847 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.119, 1.04 |
No. of reflections | 6825 |
No. of parameters | 176 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.74, −0.39 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H1N3···S1i | 0.891 (15) | 2.613 (15) | 3.4910 (7) | 168.8 (12) |
N4—H1N4···N2 | 0.885 (14) | 2.193 (14) | 2.6140 (10) | 108.7 (11) |
C9—H9B···S1 | 0.9600 | 2.7800 | 3.1225 (9) | 102.00 |
Symmetry code: (i) −x, −y, −z. |
Acknowledgements
We thank the Malysian Government and Universiti Sains Malaysia for Science Fund grant No. 1001/229/PKIMIA/811055
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Thiosemicarbazones have been a subject of extensive investigation (Kayed et al., 2008) because of their ability to coordinate metal ions and their wide range of chemical and biological activities (Valdes-Martinez et al., 1990 & Beraldo et al., 2001). We present herein the X-ray structure of the title thiosemicarbazone derivative, (I).
Compound (I), Fig. I, displays bond lengths and angles comparable to those in related structures (Beraldo et al., 2001; Kayed et al., 2008; Valdes-Martinez et al., 1990). Intramolecular N—H···N and C—H···S contacts generate S(5) ring motifs (Bernstein et al. 1995), Table 1. The dihedral angle between the phenyl ring and the thiourea unit is 6.30 (6)° which indicates the molecule is almost planar. Intermolecular N—H···S hydrogen bonds generate R22(8) ring motifs to link molecules into dimers, Fig. 2. The methyl group of the N-ethyl residue is disordered and was refined with site occupancies of 0.521 (5)/0.479 (5).