organic compounds
2,3-Difluoro-N-(2-pyridyl)benzamide
aSchool of Chemical Sciences, Dublin City University, Dublin 9, Ireland, bSchool of Chemical Sciences, National Institute for Cellular Biotechnology, Dublin City University, Dublin 9, Ireland, and cDepartment of Chemistry, 80 St George Street, University of Toronto, Toronto, Ontario, Canada M5S 3H6
*Correspondence e-mail: john.gallagher@dcu.ie
The title compound, C12H8F2N2O, crystallizes with two independent molecules in the The independent molecules differ slightly in conformation; the dihedral angles between the benzene and pyridine rings are 51.58 (5) and 49.97 (4)°. In the molecules aggregate via N—H⋯Npyridine interactions as hydrogen-bonded dimers with the structural motif R22(8), and these dimers are linked via C—H⋯O interactions to form a supramolecular chain.
Related literature
For background information, see: Chopra & Row (2008); Donnelly et al. (2008); Gelbrich et al. (2007); McMahon et al. (2008). For a related structure, see: Forbes et al. (2001). For the Cambridge Structural Database, see: Allen (2002).
Experimental
Crystal data
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Refinement
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Data collection: KappaCCD Server Software (Nonius, 1997); cell DENZO–SMN (Otwinowski & Minor, 1997); data reduction: DENZO–SMN; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008) and SORTX (McArdle, 1995); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PREP8 (Ferguson, 1998).
Supporting information
10.1107/S1600536808038269/tk2329sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808038269/tk2329Isup2.hkl
Compound (I) was synthesized via standard condensation procedures and similar to the related syntheses reported previously (Donnelly et al., 2008; McMahon et al., 2008).
Typical organic workup and washing gave the product (I) in modest yield of 15–20%. Crystals suitable for diffraction were grown from CHCl3 solution as colourless blocks over a period of 1–2 weeks. The compounds gave clean 1H and 13C NMR spectra in δ6-DMSO and infrared spectra (in CHCl3 solution, and as KBr disks).
For (I), m.p. 348–352 K (uncorrected). IR (νC=O cm-1): 1644(s), (CHCl3); 1695(s) (KBr). 1H NMR (400 MHz, DMSO): δ 11.02 (s, 1H, N—H), 8.38 (d, 1H), 8.18 (d, 1H), 7.87 (t, 1H), 7.61 (q, 1H), 7.50 (t, 1H), 7.34 (q, 1H), 7.19 (t, 1H).
H atoms attached to C atoms were treated as riding with C—H = 0.95 Å, and with Uiso(H) = 1.2Ueq(C). N-bound H atoms were refined freely with isotropic displacement parameters to bond lengths of 0.894 (19) (for N1—H1A) and 0.90 (2) Å (for N2—H2A).
Data collection: KappaCCD Server Software (Nonius, 1997); cell
DENZO–SMN (Otwinowski & Minor, 1997); data reduction: DENZO–SMN (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008) and SORTX (McArdle, 1995); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PREP8 (Ferguson, 1998).C12H8F2N2O | F(000) = 960 |
Mr = 234.20 | Dx = 1.465 Mg m−3 |
Monoclinic, P21/n | Melting point: 350 K |
Hall symbol: -P 2yn | Mo Kα radiation, λ = 0.71073 Å |
a = 11.8515 (4) Å | Cell parameters from 19375 reflections |
b = 9.0554 (2) Å | θ = 2.6–27.5° |
c = 20.1075 (7) Å | µ = 0.12 mm−1 |
β = 100.2620 (15)° | T = 150 K |
V = 2123.42 (11) Å3 | Block, colorless |
Z = 8 | 0.26 × 0.20 × 0.15 mm |
Nonius KappaCCD diffractometer | 4803 independent reflections |
Radiation source: fine-focus sealed X-ray tube | 3170 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.045 |
ϕ, ω scans with κ offsets | θmax = 27.4°, θmin = 2.9° |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | h = −15→15 |
Tmin = 0.875, Tmax = 0.981 | k = −11→11 |
5113 measured reflections | l = −25→26 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.046 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.128 | w = 1/[σ2(Fo2) + (0.0702P)2 + 0.0466P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
4803 reflections | Δρmax = 0.22 e Å−3 |
316 parameters | Δρmin = −0.23 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0082 (18) |
C12H8F2N2O | V = 2123.42 (11) Å3 |
Mr = 234.20 | Z = 8 |
Monoclinic, P21/n | Mo Kα radiation |
a = 11.8515 (4) Å | µ = 0.12 mm−1 |
b = 9.0554 (2) Å | T = 150 K |
c = 20.1075 (7) Å | 0.26 × 0.20 × 0.15 mm |
β = 100.2620 (15)° |
Nonius KappaCCD diffractometer | 4803 independent reflections |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | 3170 reflections with I > 2σ(I) |
Tmin = 0.875, Tmax = 0.981 | Rint = 0.045 |
5113 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | 0 restraints |
wR(F2) = 0.128 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.22 e Å−3 |
4803 reflections | Δρmin = −0.23 e Å−3 |
316 parameters |
x | y | z | Uiso*/Ueq | ||
F12A | 0.56446 (8) | 0.44877 (11) | 0.07324 (5) | 0.0425 (3) | |
F13A | 0.78621 (9) | 0.51655 (11) | 0.10099 (5) | 0.0488 (3) | |
O1A | 0.42720 (10) | 0.20016 (14) | −0.08253 (6) | 0.0395 (3) | |
C1A | 0.47361 (14) | 0.22193 (17) | −0.02420 (8) | 0.0305 (4) | |
N1A | 0.42289 (12) | 0.20469 (17) | 0.03102 (7) | 0.0335 (3) | |
C11A | 0.59705 (14) | 0.26753 (17) | −0.00730 (8) | 0.0290 (4) | |
C12A | 0.63682 (14) | 0.37604 (18) | 0.03976 (8) | 0.0321 (4) | |
C13A | 0.75099 (15) | 0.41319 (18) | 0.05327 (9) | 0.0355 (4) | |
C14A | 0.82865 (15) | 0.3464 (2) | 0.02003 (9) | 0.0393 (4) | |
C15A | 0.79011 (15) | 0.2389 (2) | −0.02769 (9) | 0.0381 (4) | |
C16A | 0.67583 (15) | 0.20015 (18) | −0.04120 (8) | 0.0325 (4) | |
C21A | 0.30662 (14) | 0.18055 (17) | 0.03269 (8) | 0.0299 (4) | |
N22A | 0.28635 (11) | 0.16084 (15) | 0.09545 (7) | 0.0314 (3) | |
C23A | 0.17744 (14) | 0.13679 (18) | 0.10248 (9) | 0.0346 (4) | |
C24A | 0.08688 (15) | 0.13592 (19) | 0.04919 (9) | 0.0377 (4) | |
C25A | 0.10971 (15) | 0.1603 (2) | −0.01501 (10) | 0.0410 (4) | |
C26A | 0.22090 (15) | 0.18089 (18) | −0.02435 (9) | 0.0350 (4) | |
F12B | 0.29582 (9) | 0.49048 (12) | 0.14007 (5) | 0.0443 (3) | |
F13B | 0.06988 (10) | 0.53646 (13) | 0.11073 (6) | 0.0554 (3) | |
O1B | 0.45792 (11) | 0.38227 (17) | 0.31766 (6) | 0.0555 (4) | |
C1B | 0.40611 (15) | 0.34390 (19) | 0.26233 (8) | 0.0354 (4) | |
N1B | 0.45292 (12) | 0.27166 (16) | 0.21504 (7) | 0.0325 (3) | |
C11B | 0.27918 (14) | 0.37060 (18) | 0.24278 (8) | 0.0328 (4) | |
C12B | 0.22995 (15) | 0.44225 (18) | 0.18387 (8) | 0.0345 (4) | |
C13B | 0.11332 (16) | 0.46598 (19) | 0.16891 (9) | 0.0386 (4) | |
C14B | 0.04218 (16) | 0.4186 (2) | 0.21145 (10) | 0.0421 (4) | |
C15B | 0.08962 (16) | 0.3480 (2) | 0.27087 (10) | 0.0445 (5) | |
C16B | 0.20703 (16) | 0.3250 (2) | 0.28624 (9) | 0.0395 (4) | |
C21B | 0.56780 (14) | 0.22849 (17) | 0.21788 (8) | 0.0303 (4) | |
N22B | 0.58589 (12) | 0.16736 (16) | 0.16024 (7) | 0.0344 (3) | |
C23B | 0.69244 (15) | 0.1202 (2) | 0.15795 (9) | 0.0384 (4) | |
C24B | 0.78295 (15) | 0.1326 (2) | 0.21110 (9) | 0.0389 (4) | |
C25B | 0.76225 (16) | 0.1964 (2) | 0.27011 (9) | 0.0427 (5) | |
C26B | 0.65348 (15) | 0.2447 (2) | 0.27418 (9) | 0.0390 (4) | |
H1A | 0.4709 (16) | 0.1978 (19) | 0.0706 (9) | 0.035 (5)* | |
H14A | 0.9074 | 0.3732 | 0.0295 | 0.047* | |
H15A | 0.8428 | 0.1916 | −0.0512 | 0.046* | |
H16A | 0.6505 | 0.1264 | −0.0741 | 0.039* | |
H23A | 0.1621 | 0.1195 | 0.1466 | 0.042* | |
H24A | 0.0108 | 0.1191 | 0.0563 | 0.045* | |
H25A | 0.0486 | 0.1628 | −0.0527 | 0.049* | |
H26A | 0.2384 | 0.1949 | −0.0682 | 0.042* | |
H1B | 0.4059 (17) | 0.240 (2) | 0.1778 (10) | 0.043 (5)* | |
H14B | −0.0383 | 0.4340 | 0.2003 | 0.051* | |
H15B | 0.0418 | 0.3153 | 0.3011 | 0.053* | |
H16B | 0.2388 | 0.2770 | 0.3273 | 0.047* | |
H23B | 0.7063 | 0.0758 | 0.1174 | 0.046* | |
H24B | 0.8573 | 0.0983 | 0.2073 | 0.047* | |
H25B | 0.8227 | 0.2069 | 0.3077 | 0.051* | |
H26B | 0.6375 | 0.2881 | 0.3145 | 0.047* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F12A | 0.0384 (6) | 0.0438 (6) | 0.0455 (6) | 0.0052 (4) | 0.0084 (5) | −0.0136 (5) |
F13A | 0.0455 (7) | 0.0452 (6) | 0.0519 (7) | −0.0065 (5) | −0.0018 (5) | −0.0134 (5) |
O1A | 0.0386 (7) | 0.0519 (8) | 0.0264 (7) | −0.0028 (5) | 0.0015 (5) | −0.0038 (5) |
C1A | 0.0317 (9) | 0.0328 (9) | 0.0258 (9) | 0.0030 (7) | 0.0020 (7) | −0.0014 (7) |
N1A | 0.0241 (8) | 0.0508 (9) | 0.0244 (8) | −0.0028 (6) | 0.0008 (6) | −0.0018 (6) |
C11A | 0.0311 (9) | 0.0313 (8) | 0.0243 (8) | 0.0017 (6) | 0.0040 (7) | 0.0021 (7) |
C12A | 0.0321 (9) | 0.0333 (9) | 0.0315 (9) | 0.0058 (7) | 0.0073 (7) | −0.0006 (7) |
C13A | 0.0371 (10) | 0.0326 (9) | 0.0342 (9) | −0.0036 (7) | −0.0008 (8) | −0.0017 (8) |
C14A | 0.0286 (9) | 0.0461 (10) | 0.0428 (11) | −0.0013 (8) | 0.0055 (8) | 0.0042 (9) |
C15A | 0.0334 (10) | 0.0468 (10) | 0.0352 (10) | 0.0067 (8) | 0.0093 (8) | 0.0025 (8) |
C16A | 0.0373 (10) | 0.0337 (9) | 0.0266 (9) | 0.0030 (7) | 0.0056 (7) | 0.0006 (7) |
C21A | 0.0286 (9) | 0.0308 (8) | 0.0296 (9) | 0.0011 (6) | 0.0035 (7) | −0.0006 (7) |
N22A | 0.0286 (8) | 0.0353 (8) | 0.0300 (8) | −0.0001 (6) | 0.0047 (6) | −0.0010 (6) |
C23A | 0.0357 (10) | 0.0339 (9) | 0.0354 (10) | −0.0019 (7) | 0.0095 (8) | −0.0022 (7) |
C24A | 0.0296 (9) | 0.0401 (10) | 0.0426 (11) | −0.0049 (7) | 0.0041 (8) | −0.0015 (8) |
C25A | 0.0322 (10) | 0.0476 (11) | 0.0389 (10) | −0.0033 (8) | −0.0048 (8) | −0.0009 (8) |
C26A | 0.0320 (10) | 0.0417 (10) | 0.0292 (9) | −0.0011 (7) | −0.0003 (7) | 0.0016 (8) |
F12B | 0.0424 (6) | 0.0497 (6) | 0.0426 (6) | 0.0017 (5) | 0.0121 (5) | 0.0126 (5) |
F13B | 0.0462 (7) | 0.0643 (7) | 0.0531 (7) | 0.0097 (5) | 0.0014 (5) | 0.0206 (6) |
O1B | 0.0459 (8) | 0.0824 (10) | 0.0345 (8) | 0.0130 (7) | −0.0024 (6) | −0.0221 (7) |
C1B | 0.0376 (10) | 0.0408 (10) | 0.0272 (9) | 0.0025 (7) | 0.0041 (8) | −0.0026 (8) |
N1B | 0.0296 (8) | 0.0422 (8) | 0.0243 (7) | 0.0018 (6) | 0.0008 (6) | −0.0035 (6) |
C11B | 0.0360 (10) | 0.0340 (9) | 0.0286 (9) | 0.0021 (7) | 0.0060 (7) | −0.0057 (7) |
C12B | 0.0374 (10) | 0.0356 (9) | 0.0320 (9) | −0.0011 (7) | 0.0103 (8) | −0.0003 (8) |
C13B | 0.0389 (11) | 0.0376 (10) | 0.0377 (10) | 0.0043 (8) | 0.0022 (8) | 0.0030 (8) |
C14B | 0.0336 (10) | 0.0465 (10) | 0.0459 (11) | 0.0018 (8) | 0.0063 (8) | −0.0054 (9) |
C15B | 0.0417 (11) | 0.0544 (11) | 0.0402 (11) | −0.0027 (9) | 0.0148 (9) | −0.0056 (9) |
C16B | 0.0420 (11) | 0.0489 (11) | 0.0284 (9) | 0.0032 (8) | 0.0084 (8) | −0.0017 (8) |
C21B | 0.0330 (9) | 0.0310 (8) | 0.0266 (9) | 0.0001 (6) | 0.0043 (7) | 0.0011 (7) |
N22B | 0.0331 (8) | 0.0393 (8) | 0.0292 (8) | 0.0037 (6) | 0.0015 (6) | −0.0024 (6) |
C23B | 0.0364 (10) | 0.0424 (10) | 0.0355 (10) | 0.0076 (8) | 0.0045 (8) | −0.0038 (8) |
C24B | 0.0303 (10) | 0.0458 (10) | 0.0387 (10) | 0.0035 (7) | 0.0014 (8) | 0.0024 (8) |
C25B | 0.0350 (10) | 0.0552 (12) | 0.0342 (10) | −0.0007 (8) | −0.0037 (8) | −0.0006 (9) |
C26B | 0.0367 (10) | 0.0504 (11) | 0.0280 (9) | 0.0002 (8) | 0.0006 (8) | −0.0023 (8) |
F12A—C12A | 1.3520 (18) | C12B—C13B | 1.378 (2) |
F13A—C13A | 1.3522 (19) | C13B—C14B | 1.373 (3) |
O1A—C1A | 1.2195 (19) | C14B—C15B | 1.383 (3) |
C1A—N1A | 1.363 (2) | C15B—C16B | 1.386 (3) |
C1A—C11A | 1.500 (2) | C21B—N22B | 1.336 (2) |
N1A—C21A | 1.402 (2) | C21B—C26B | 1.387 (2) |
C11A—C12A | 1.387 (2) | N22B—C23B | 1.342 (2) |
C11A—C16A | 1.391 (2) | C23B—C24B | 1.377 (2) |
C12A—C13A | 1.374 (2) | C24B—C25B | 1.380 (3) |
C13A—C14A | 1.371 (2) | C25B—C26B | 1.377 (3) |
C14A—C15A | 1.386 (3) | N1A—H1A | 0.894 (19) |
C15A—C16A | 1.378 (2) | C14A—H14A | 0.9500 |
C21A—N22A | 1.338 (2) | C15A—H15A | 0.9500 |
C21A—C26A | 1.390 (2) | C16A—H16A | 0.9500 |
N22A—C23A | 1.341 (2) | C23A—H23A | 0.9500 |
C23A—C24A | 1.375 (2) | C24A—H24A | 0.9500 |
C24A—C25A | 1.383 (3) | C25A—H25A | 0.9500 |
C25A—C26A | 1.377 (2) | C26A—H26A | 0.9500 |
F12B—C12B | 1.3493 (19) | N1B—H1B | 0.90 (2) |
F13B—C13B | 1.351 (2) | C14B—H14B | 0.9500 |
O1B—C1B | 1.221 (2) | C15B—H15B | 0.9500 |
C1B—N1B | 1.352 (2) | C16B—H16B | 0.9500 |
C1B—C11B | 1.505 (2) | C23B—H23B | 0.9500 |
N1B—C21B | 1.408 (2) | C24B—H24B | 0.9500 |
C11B—C12B | 1.385 (2) | C25B—H25B | 0.9500 |
C11B—C16B | 1.390 (2) | C26B—H26B | 0.9500 |
O1A—C1A—N1A | 125.19 (16) | O1B—C1B—N1B | 125.13 (16) |
O1A—C1A—C11A | 121.14 (15) | O1B—C1B—C11B | 120.60 (15) |
N1A—C1A—C11A | 113.64 (14) | N1B—C1B—C11B | 114.22 (14) |
C1A—N1A—C21A | 128.01 (14) | C1B—N1B—C21B | 128.38 (14) |
C1A—N1A—H1A | 115.5 (11) | C1B—N1B—H1B | 118.2 (12) |
C21A—N1A—H1A | 116.1 (11) | C21B—N1B—H1B | 113.3 (12) |
C12A—C11A—C16A | 117.95 (15) | C12B—C11B—C16B | 117.68 (16) |
C12A—C11A—C1A | 123.29 (15) | C12B—C11B—C1B | 123.21 (15) |
C16A—C11A—C1A | 118.75 (15) | C16B—C11B—C1B | 119.09 (15) |
F12A—C12A—C11A | 121.07 (15) | F12B—C12B—C11B | 120.36 (15) |
F12A—C12A—C13A | 118.17 (15) | F12B—C12B—C13B | 118.78 (15) |
C13A—C12A—C11A | 120.76 (15) | C13B—C12B—C11B | 120.86 (16) |
F13A—C13A—C12A | 118.59 (15) | F13B—C13B—C12B | 118.38 (16) |
F13A—C13A—C14A | 120.15 (16) | F13B—C13B—C14B | 120.37 (17) |
C14A—C13A—C12A | 121.25 (16) | C14B—C13B—C12B | 121.25 (17) |
C13A—C14A—C15A | 118.72 (17) | C13B—C14B—C15B | 118.86 (17) |
C16A—C15A—C14A | 120.42 (16) | C14B—C15B—C16B | 119.97 (17) |
C15A—C16A—C11A | 120.89 (16) | C15B—C16B—C11B | 121.37 (17) |
N22A—C21A—C26A | 123.43 (15) | N22B—C21B—C26B | 123.00 (16) |
N22A—C21A—N1A | 112.70 (14) | N22B—C21B—N1B | 112.55 (14) |
C26A—C21A—N1A | 123.84 (15) | C26B—C21B—N1B | 124.44 (15) |
C21A—N22A—C23A | 117.32 (14) | C21B—N22B—C23B | 117.33 (14) |
N22A—C23A—C24A | 123.44 (16) | N22B—C23B—C24B | 123.73 (17) |
C23A—C24A—C25A | 118.11 (16) | C23B—C24B—C25B | 117.90 (17) |
C26A—C25A—C24A | 120.02 (16) | C26B—C25B—C24B | 119.71 (17) |
C25A—C26A—C21A | 117.62 (16) | C25B—C26B—C21B | 118.32 (16) |
C13A—C14A—H14A | 120.6 | C13B—C14B—H14B | 120.6 |
C15A—C14A—H14A | 120.6 | C15B—C14B—H14B | 120.6 |
C16A—C15A—H15A | 119.8 | C14B—C15B—H15B | 120.0 |
C14A—C15A—H15A | 119.8 | C16B—C15B—H15B | 120.0 |
C15A—C16A—H16A | 119.6 | C15B—C16B—H16B | 119.3 |
C11A—C16A—H16A | 119.6 | C11B—C16B—H16B | 119.3 |
C23A—C24A—H24A | 120.9 | N22B—C23B—H23B | 118.1 |
C25A—C24A—H24A | 120.9 | C24B—C23B—H23B | 118.1 |
C26A—C25A—H25A | 120.0 | C23B—C24B—H24B | 121.0 |
C24A—C25A—H25A | 120.0 | C25B—C24B—H24B | 121.0 |
N22A—C23A—H23A | 118.3 | C26B—C25B—H25B | 120.1 |
C24A—C23A—H23A | 118.3 | C24B—C25B—H25B | 120.1 |
C25A—C26A—H26A | 121.2 | C25B—C26B—H26B | 120.8 |
C21A—C26A—H26A | 121.2 | C21B—C26B—H26B | 120.8 |
O1A—C1A—N1A—C21A | −10.0 (3) | O1B—C1B—N1B—C21B | −1.4 (3) |
C11A—C1A—N1A—C21A | 171.67 (15) | C11B—C1B—N1B—C21B | −179.18 (15) |
O1A—C1A—C11A—C12A | 137.44 (17) | O1B—C1B—C11B—C12B | 127.03 (19) |
N1A—C1A—C11A—C12A | −44.2 (2) | N1B—C1B—C11B—C12B | −55.1 (2) |
O1A—C1A—C11A—C16A | −41.3 (2) | O1B—C1B—C11B—C16B | −51.4 (2) |
N1A—C1A—C11A—C16A | 137.08 (16) | N1B—C1B—C11B—C16B | 126.52 (17) |
C16A—C11A—C12A—F12A | 178.24 (14) | C16B—C11B—C12B—F12B | 179.31 (15) |
C1A—C11A—C12A—F12A | −0.5 (2) | C1B—C11B—C12B—F12B | 0.9 (2) |
C16A—C11A—C12A—C13A | −1.3 (2) | C16B—C11B—C12B—C13B | −0.5 (2) |
C1A—C11A—C12A—C13A | 179.93 (16) | C1B—C11B—C12B—C13B | −178.94 (16) |
F12A—C12A—C13A—F13A | 2.4 (2) | F12B—C12B—C13B—F13B | 0.2 (2) |
C11A—C12A—C13A—F13A | −178.07 (15) | C11B—C12B—C13B—F13B | 180.00 (15) |
F12A—C12A—C13A—C14A | −178.45 (15) | F12B—C12B—C13B—C14B | 179.65 (16) |
C11A—C12A—C13A—C14A | 1.1 (3) | C11B—C12B—C13B—C14B | −0.5 (3) |
F13A—C13A—C14A—C15A | 178.79 (16) | F13B—C13B—C14B—C15B | −179.45 (16) |
C12A—C13A—C14A—C15A | −0.4 (3) | C12B—C13B—C14B—C15B | 1.1 (3) |
C13A—C14A—C15A—C16A | −0.1 (3) | C13B—C14B—C15B—C16B | −0.6 (3) |
C14A—C15A—C16A—C11A | −0.1 (3) | C14B—C15B—C16B—C11B | −0.5 (3) |
C12A—C11A—C16A—C15A | 0.8 (2) | C12B—C11B—C16B—C15B | 1.0 (3) |
C1A—C11A—C16A—C15A | 179.64 (15) | C1B—C11B—C16B—C15B | 179.48 (16) |
C1A—N1A—C21A—N22A | 176.76 (16) | C1B—N1B—C21B—N22B | −175.88 (16) |
C1A—N1A—C21A—C26A | −4.9 (3) | C1B—N1B—C21B—C26B | 5.0 (3) |
C26A—C21A—N22A—C23A | 1.7 (2) | C26B—C21B—N22B—C23B | 0.1 (2) |
N1A—C21A—N22A—C23A | −179.97 (14) | N1B—C21B—N22B—C23B | −179.03 (15) |
C21A—N22A—C23A—C24A | −2.0 (2) | C21B—N22B—C23B—C24B | −0.5 (3) |
N22A—C23A—C24A—C25A | 0.4 (3) | N22B—C23B—C24B—C25B | 0.4 (3) |
C23A—C24A—C25A—C26A | 1.6 (3) | C23B—C24B—C25B—C26B | 0.2 (3) |
C24A—C25A—C26A—C21A | −1.9 (3) | C24B—C25B—C26B—C21B | −0.6 (3) |
N22A—C21A—C26A—C25A | 0.2 (3) | N22B—C21B—C26B—C25B | 0.5 (3) |
N1A—C21A—C26A—C25A | −177.96 (16) | N1B—C21B—C26B—C25B | 179.45 (16) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H1A···N22B | 0.894 (19) | 2.076 (19) | 2.968 (2) | 175.9 (16) |
N1B—H1B···N22A | 0.90 (2) | 2.10 (2) | 2.999 (2) | 175.4 (17) |
C26A—H26A···O1A | 0.95 | 2.31 | 2.898 (2) | 120 |
C26B—H26B···O1B | 0.95 | 2.30 | 2.900 (2) | 120 |
C25B—H25B···O1Ai | 0.95 | 2.48 | 3.379 (2) | 159 |
C25A—H25A···O1Bii | 0.95 | 2.67 | 3.542 (2) | 153 |
Symmetry codes: (i) x+1/2, −y+1/2, z+1/2; (ii) x−1/2, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C12H8F2N2O |
Mr | 234.20 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 150 |
a, b, c (Å) | 11.8515 (4), 9.0554 (2), 20.1075 (7) |
β (°) | 100.2620 (15) |
V (Å3) | 2123.42 (11) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.12 |
Crystal size (mm) | 0.26 × 0.20 × 0.15 |
Data collection | |
Diffractometer | Nonius KappaCCD diffractometer |
Absorption correction | Multi-scan (SORTAV; Blessing, 1995) |
Tmin, Tmax | 0.875, 0.981 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5113, 4803, 3170 |
Rint | 0.045 |
(sin θ/λ)max (Å−1) | 0.647 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.128, 1.04 |
No. of reflections | 4803 |
No. of parameters | 316 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.22, −0.23 |
Computer programs: KappaCCD Server Software (Nonius, 1997), DENZO–SMN (Otwinowski & Minor, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008) and SORTX (McArdle, 1995), PLATON (Spek, 2003), SHELXL97 (Sheldrick, 2008) and PREP8 (Ferguson, 1998).
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H1A···N22B | 0.894 (19) | 2.076 (19) | 2.968 (2) | 175.9 (16) |
N1B—H1B···N22A | 0.90 (2) | 2.10 (2) | 2.999 (2) | 175.4 (17) |
C25B—H25B···O1Ai | 0.95 | 2.48 | 3.379 (2) | 159 |
C25A—H25A···O1Bii | 0.95 | 2.67 | 3.542 (2) | 153 |
Symmetry codes: (i) x+1/2, −y+1/2, z+1/2; (ii) x−1/2, −y+1/2, z−1/2. |
Footnotes
‡Additional correspondence author, e-mail: alough@chem.utoronto.ca.
Acknowledgements
JFG thanks Dublin City University for the grants in aid of undergraduate research. Thanks especially to Mr Damien McGuirk for providing excellent technical assistance in the undergraduate research laboratories.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Our group is completing a structural systematic study of fluoro-N'-(pyridyl)benzamide isomers (Donnelly et al., 2008) and are adding to our research with the analogous difluoro-N-(pyridyl)benzamide series (McMahon et al., 2008) (Scheme 1). A total of 18 isomers are possible via amide formation and resulting through condensation of the 2,3-, 2,4-, 2,5-, 2,6-, 3,4-, 3,5-difluorobenzoyl chlorides with the 4-/3-/2-aminopyridines. The 2,3-, 2,4- and 2,5-difluoro-N-(4-pyridyl)benzamides have already been reported by us (McMahon et al., 2008). Systematic structural analyses have recently been reported for related fluoro derivatives (Chopra & Row, 2008) and isomeric series (Gelbrich et al., 2007).
There is a dearth of structural information in the literature on all six possible difluorobenzene derivatives F2C6H3—Z (Z = remainder of molecule) from analysis of structural data in the Cambridge Structural Database (Allen 2002; v5.29, Nov 2007 issue + 2 updates). In this structural report the structure of 2,3-difluoro-N-(2-pyridyl)benzamide (I), Fig. 1, is described.
Compound (I) crystallizes with two molecules, A and B (which differ slightly in conformation) in the asymmetric unit: the C6/C5N internal angles are 51.58 (5)° and 49.97 (4)°, respectively, see overlay diagram, Fig. 2. Molecules aggregate via N—H···N interactions as hydrogen bonded dimers with structural motif R22(8); see Table 1 for geometric parameters. The [N1A/C21A/N22A/H1A] and [N1B/C21B/N22B/H1B] interplanar angle is 36.2 (3)° and deviates considerably from co-planarity therefore highlighting a degree of twist between the two interacting molecules. Hydrogen bonded dimers are linked into a supramolecular chain via C—H···O=C intermolecular interactions, Table 1 and Fig. 3.
An analysis of the Cambridge Structural Database reveals a related structure pentafluoro-N-(2-pyridyl)benzamide (II) [CSD code IDALAA] (Forbes et al., 2001) where molecules also form hydrogen bonded dimers in space group P1 (No. 2) with Z'=2. The N···N intermolecular distances in (II) are 2.9568 (14) and 3.0734 (15) Å.