organic compounds
2,3,4,6-Tetra-O-acetyl-β-D-galactopyranosyl 2,3,4,6-tetra-O-acetyl-β-D-glucopyranosyl disulfide tetrahydrofuran solvate
aDepartamento de Química, Facultad de Ciencias Básicas, Universidad de Antofagasta, Casilla 170, Antofagasta, Chile, bDepartment of Organic Chemistry, University of Debrecen, H-4010 Debrecen Pf. 20, Hungary, and cInstituto de Bio-Orgánica 'Antonio González', Universidad de La Laguna, Astrofísico Francisco Sánchez N°2, La Laguna, Tenerife, Spain
*Correspondence e-mail: ivanbritob@yahoo.com
The 28H38O18S2·C4H8O, comprises one disulfide-bridged sugar molecule and one solvent molecule. No significant differences in structural parameters are found between the present structure and the previously determined unsolvated form [Brito, López-Rodríguez, Bényei & Szilagyi (2006). Carbohydr. Res. 341, 2967–2972]. The compounds are characterized by a compact structure with spatial proximity of the two pyranosyl rings. One of the carbonyl atoms is disordered over two sites [site occupancy = 0.69 (7) for major component] and the displacement parameters for the THF species are unsually large.
of title compound, CRelated literature
For analysis of conformation, see: Cremer & Pople (1975). For the synthesis, see: Szilágyi et al. (2001). For background to disulfide linkage and diglycosyl disulfides, see: André et al. (2006); Chakka et al. (2005); Pérez et al. (1978); Szilágyi & Varela (2006). For the structure of the unsolvated form, see: Brito et al. (2006).
Experimental
Crystal data
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Data collection: COLLECT (Nonius, 2000); cell DENZO-SMN (Otwinowski & Minor, 1997); data reduction: DENZO-SMN; program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2003); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536808039494/tk2332sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808039494/tk2332Isup2.hkl
The H atoms were geometrically placed (C—H = 0.96–0.98 Å) and refined as riding with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(methyl-C). The O29 atom was refined over two sites using a disorder model, with occupancies of 0.69 (7) and 0.31 (7). The THF molecule is disordered and was modelled with restraints for distances and anisotropic displacement parameters using a 'rigid-bond' restraint to Uij, implemented as the DELU instruction in SHELXL97 (Sheldrick, 2008).
Data collection: COLLECT (Nonius, 2000); cell
DENZO-SMN (Otwinowski & Minor, 1997); data reduction: DENZO-SMN(Otwinowski & Minor, 1997); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2003); software used to prepare material for publication: WinGX (Farrugia, 1999).Fig. 1. The molecular structure of (I), with the atomic numbering scheme. Displacement ellipsoids are drawn at the 30% probability level. All H atoms have been omitted for clarity. |
C28H38O18S2·C4H8O | F(000) = 844 |
Mr = 798.81 | Dx = 1.281 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 4312 reflections |
a = 14.6499 (14) Å | θ = 2.4–25.0° |
b = 10.0096 (10) Å | µ = 0.20 mm−1 |
c = 15.4029 (15) Å | T = 298 K |
β = 113.573 (2)° | Prism, yellow |
V = 2070.2 (4) Å3 | 0.40 × 0.30 × 0.20 mm |
Z = 2 |
Nonius KappaCCD area-detector diffractometer | 7410 independent reflections |
Radiation source: fine-focus sealed tube | 4763 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.046 |
ϕ scans, and ω scans with κ offsets | θmax = 25.2°, θmin = 2.5° |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | h = −17→16 |
Tmin = 0.920, Tmax = 0.960 | k = −12→11 |
13257 measured reflections | l = −18→18 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.054 | H-atom parameters constrained |
wR(F2) = 0.151 | w = 1/[σ2(Fo2) + (0.0875P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.85 | (Δ/σ)max = 0.042 |
7410 reflections | Δρmax = 0.34 e Å−3 |
497 parameters | Δρmin = −0.19 e Å−3 |
45 restraints | Absolute structure: Flack, (1983), 3438 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.02 (9) |
C28H38O18S2·C4H8O | V = 2070.2 (4) Å3 |
Mr = 798.81 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 14.6499 (14) Å | µ = 0.20 mm−1 |
b = 10.0096 (10) Å | T = 298 K |
c = 15.4029 (15) Å | 0.40 × 0.30 × 0.20 mm |
β = 113.573 (2)° |
Nonius KappaCCD area-detector diffractometer | 7410 independent reflections |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | 4763 reflections with I > 2σ(I) |
Tmin = 0.920, Tmax = 0.960 | Rint = 0.046 |
13257 measured reflections |
R[F2 > 2σ(F2)] = 0.054 | H-atom parameters constrained |
wR(F2) = 0.151 | Δρmax = 0.34 e Å−3 |
S = 0.85 | Δρmin = −0.19 e Å−3 |
7410 reflections | Absolute structure: Flack, (1983), 3438 Friedel pairs |
497 parameters | Absolute structure parameter: 0.02 (9) |
45 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F^2^ against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F^2^, conventional R-factors R are based on F, with F set to zero for negative F^2^. The threshold expression of F^2^ > σ(F^2^) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F^2^ are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
S1 | 0.94859 (8) | 0.98543 (12) | 0.93468 (8) | 0.0609 (3) | |
O1 | 0.8235 (2) | 1.1214 (3) | 0.98368 (19) | 0.0587 (7) | |
O2 | 0.5745 (2) | 1.1063 (3) | 0.7358 (2) | 0.0692 (8) | |
O3 | 0.5648 (4) | 1.2681 (6) | 0.6357 (3) | 0.146 (2) | |
O4 | 0.7645 (2) | 1.0285 (3) | 0.7398 (2) | 0.0644 (8) | |
O5 | 0.6752 (4) | 0.8414 (4) | 0.7054 (3) | 0.1135 (14) | |
O6 | 0.8497 (3) | 1.2956 (4) | 1.1307 (2) | 0.0822 (9) | |
O7 | 0.8713 (4) | 1.0964 (5) | 1.2001 (3) | 0.1132 (14) | |
O8 | 0.5850 (2) | 1.2941 (3) | 0.8764 (2) | 0.0684 (8) | |
O9 | 0.5145 (3) | 1.1965 (4) | 0.9648 (3) | 0.1042 (13) | |
C1 | 0.8424 (3) | 1.0964 (4) | 0.9008 (3) | 0.0546 (10) | |
H1 | 0.8612 | 1.1814 | 0.8809 | 0.066* | |
C2 | 0.7471 (3) | 1.0494 (4) | 0.8225 (3) | 0.0548 (10) | |
H2 | 0.7253 | 0.9658 | 0.8412 | 0.066* | |
C3 | 0.6682 (3) | 1.1554 (4) | 0.8047 (3) | 0.0580 (11) | |
H3 | 0.6874 | 1.2365 | 0.7806 | 0.07* | |
C4 | 0.6549 (3) | 1.1872 (5) | 0.8953 (3) | 0.0624 (11) | |
H4 | 0.6301 | 1.1083 | 0.9166 | 0.075* | |
C5 | 0.7552 (3) | 1.2286 (4) | 0.9704 (3) | 0.0601 (11) | |
H5 | 0.7793 | 1.3079 | 0.9487 | 0.072* | |
C6 | 0.5307 (4) | 1.1702 (7) | 0.6531 (4) | 0.0865 (16) | |
C7 | 0.4395 (5) | 1.1036 (8) | 0.5895 (4) | 0.116 (2) | |
H7A | 0.3886 | 1.1144 | 0.6135 | 0.174* | |
H7B | 0.4524 | 1.0102 | 0.5859 | 0.174* | |
H7C | 0.4175 | 1.1426 | 0.5275 | 0.174* | |
C8 | 0.7260 (4) | 0.9197 (6) | 0.6875 (4) | 0.0773 (14) | |
C9 | 0.7533 (5) | 0.9114 (8) | 0.6047 (4) | 0.116 (2) | |
H9A | 0.7772 | 0.8231 | 0.6009 | 0.175* | |
H9B | 0.8046 | 0.9754 | 0.6117 | 0.175* | |
H9C | 0.6959 | 0.9302 | 0.5478 | 0.175* | |
C10 | 0.7520 (4) | 1.2569 (6) | 1.0644 (3) | 0.0802 (15) | |
H10A | 0.7049 | 1.3282 | 1.058 | 0.096* | |
H10B | 0.7302 | 1.1779 | 1.0873 | 0.096* | |
C11 | 0.9038 (5) | 1.2052 (7) | 1.1941 (4) | 0.0896 (17) | |
C12 | 1.0060 (5) | 1.2548 (8) | 1.2510 (4) | 0.122 (2) | |
H12A | 1.0442 | 1.1855 | 1.2929 | 0.183* | |
H12B | 1.0025 | 1.3309 | 1.2875 | 0.183* | |
H12C | 1.0374 | 1.2801 | 1.2094 | 0.183* | |
C13 | 0.5199 (3) | 1.2900 (6) | 0.9193 (3) | 0.0704 (12) | |
C14 | 0.4608 (4) | 1.4138 (5) | 0.9033 (4) | 0.0890 (16) | |
H14A | 0.4028 | 1.3978 | 0.9161 | 0.133* | |
H14B | 0.4408 | 1.4417 | 0.8386 | 0.133* | |
H14C | 0.5005 | 1.4826 | 0.9447 | 0.133* | |
S2 | 0.89370 (8) | 0.80485 (11) | 0.95029 (7) | 0.0611 (3) | |
O21 | 0.98609 (19) | 0.7760 (3) | 1.13641 (18) | 0.0584 (7) | |
O22 | 0.7552 (2) | 0.5961 (3) | 1.1697 (2) | 0.0684 (8) | |
O23 | 0.6851 (3) | 0.7007 (4) | 1.2553 (3) | 0.0950 (11) | |
O24 | 0.7182 (2) | 0.7573 (3) | 1.0062 (2) | 0.0678 (8) | |
O25 | 0.6962 (4) | 0.5714 (5) | 0.9230 (3) | 0.1235 (16) | |
O26 | 1.1652 (2) | 0.8389 (4) | 1.2729 (2) | 0.0751 (9) | |
O27 | 1.1690 (4) | 0.9965 (5) | 1.3749 (4) | 0.1336 (17) | |
O28 | 0.9183 (2) | 0.7190 (4) | 1.3348 (2) | 0.0803 (9) | |
O29A | 0.988 (5) | 0.519 (4) | 1.3922 (18) | 0.103 (15) | 0.31 (7) |
O29B | 0.921 (4) | 0.5063 (16) | 1.3697 (18) | 0.155 (9) | 0.69 (7) |
C21 | 0.8909 (3) | 0.8131 (4) | 1.0674 (3) | 0.0531 (9) | |
H21 | 0.8739 | 0.9037 | 1.0799 | 0.064* | |
C22 | 0.8144 (3) | 0.7149 (4) | 1.0712 (3) | 0.0576 (10) | |
H22 | 0.8288 | 0.626 | 1.0531 | 0.069* | |
C23 | 0.8154 (3) | 0.7094 (5) | 1.1694 (3) | 0.0601 (11) | |
H23 | 0.7853 | 0.791 | 1.1815 | 0.072* | |
C24 | 0.9198 (3) | 0.6941 (4) | 1.2442 (3) | 0.0593 (11) | |
H24 | 0.943 | 0.6028 | 1.2424 | 0.071* | |
C25 | 0.9914 (3) | 0.7911 (5) | 1.2309 (3) | 0.0593 (10) | |
H25 | 0.974 | 0.8827 | 1.2407 | 0.071* | |
C26 | 0.6918 (4) | 0.6043 (5) | 1.2123 (4) | 0.0740 (13) | |
C27 | 0.6347 (5) | 0.4806 (6) | 1.2017 (5) | 0.1028 (18) | |
H27A | 0.584 | 0.494 | 1.2256 | 0.154* | |
H27B | 0.6785 | 0.4103 | 1.2367 | 0.154* | |
H27C | 0.6042 | 0.4566 | 1.136 | 0.154* | |
C28 | 0.6681 (4) | 0.6785 (6) | 0.9334 (4) | 0.0798 (14) | |
C29 | 0.5757 (4) | 0.7449 (7) | 0.8683 (4) | 0.105 (2) | |
H29A | 0.5918 | 0.8306 | 0.8502 | 0.157* | |
H29B | 0.5313 | 0.7564 | 0.8997 | 0.157* | |
H29C | 0.5441 | 0.6907 | 0.8129 | 0.157* | |
C210 | 1.0967 (3) | 0.7613 (5) | 1.2966 (3) | 0.0708 (13) | |
H21A | 1.1056 | 0.7808 | 1.3612 | 0.085* | |
H21B | 1.1102 | 0.6671 | 1.2928 | 0.085* | |
C211 | 1.1968 (4) | 0.9552 (5) | 1.3177 (4) | 0.0830 (15) | |
C212 | 1.2625 (6) | 1.0235 (7) | 1.2826 (6) | 0.128 (2) | |
H21C | 1.2737 | 1.1132 | 1.3067 | 0.191* | |
H21D | 1.2324 | 1.0257 | 1.2146 | 0.191* | |
H21E | 1.3249 | 0.9769 | 1.3032 | 0.191* | |
C213 | 0.9328 (8) | 0.6160 (10) | 1.3954 (5) | 0.115 (3) | |
C214 | 0.9212 (7) | 0.6644 (11) | 1.4834 (5) | 0.174 (4) | |
H21F | 0.9701 | 0.6219 | 1.5381 | 0.261* | |
H21G | 0.8557 | 0.6426 | 1.4792 | 0.261* | |
H21H | 0.9304 | 0.7595 | 1.4888 | 0.261* | |
O31 | 0.7418 (11) | 0.0601 (14) | 0.3640 (9) | 0.306 (5) | |
C31 | 0.6827 (15) | 0.2535 (13) | 0.4405 (8) | 0.301 (9) | |
H31A | 0.6559 | 0.3386 | 0.4113 | 0.361* | |
H31B | 0.71 | 0.265 | 0.5087 | 0.361* | |
C32 | 0.7705 (12) | 0.2047 (18) | 0.4071 (10) | 0.291 (7) | |
H32A | 0.7751 | 0.2654 | 0.3599 | 0.349* | |
H32B | 0.8343 | 0.203 | 0.4608 | 0.349* | |
C33 | 0.6337 (11) | 0.0251 (15) | 0.3603 (6) | 0.235 (5) | |
H33A | 0.5878 | 0.0138 | 0.2947 | 0.282* | |
H33B | 0.637 | −0.059 | 0.3927 | 0.282* | |
C34 | 0.5917 (12) | 0.1382 (19) | 0.4080 (8) | 0.281 (6) | |
H34A | 0.5818 | 0.1036 | 0.4624 | 0.337* | |
H34B | 0.5293 | 0.1746 | 0.363 | 0.337* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0625 (6) | 0.0635 (6) | 0.0677 (7) | 0.0038 (6) | 0.0377 (5) | 0.0038 (6) |
O1 | 0.0704 (18) | 0.0570 (17) | 0.0581 (17) | 0.0048 (13) | 0.0358 (15) | 0.0102 (15) |
O2 | 0.0641 (19) | 0.0688 (19) | 0.071 (2) | −0.0002 (16) | 0.0228 (16) | −0.0020 (16) |
O3 | 0.132 (4) | 0.165 (5) | 0.098 (3) | 0.056 (3) | 0.001 (3) | −0.036 (4) |
O4 | 0.081 (2) | 0.0657 (19) | 0.0530 (17) | −0.0031 (15) | 0.0335 (15) | −0.0036 (16) |
O5 | 0.157 (4) | 0.073 (3) | 0.121 (3) | −0.025 (2) | 0.066 (3) | −0.029 (3) |
O6 | 0.110 (3) | 0.070 (2) | 0.0621 (19) | 0.0011 (18) | 0.0296 (19) | 0.023 (2) |
O7 | 0.144 (4) | 0.103 (3) | 0.106 (3) | 0.029 (3) | 0.064 (3) | 0.023 (3) |
O8 | 0.0714 (19) | 0.0543 (17) | 0.089 (2) | 0.0138 (16) | 0.0425 (17) | 0.0106 (16) |
O9 | 0.117 (3) | 0.098 (3) | 0.135 (3) | 0.041 (3) | 0.090 (3) | 0.031 (2) |
C1 | 0.063 (3) | 0.051 (2) | 0.059 (2) | 0.004 (2) | 0.033 (2) | 0.000 (2) |
C2 | 0.061 (3) | 0.053 (2) | 0.055 (2) | 0.0059 (19) | 0.028 (2) | −0.002 (2) |
C3 | 0.056 (3) | 0.054 (2) | 0.062 (3) | 0.002 (2) | 0.021 (2) | −0.002 (2) |
C4 | 0.063 (3) | 0.058 (3) | 0.073 (3) | 0.011 (2) | 0.034 (2) | 0.007 (2) |
C5 | 0.075 (3) | 0.048 (2) | 0.066 (3) | 0.004 (2) | 0.037 (2) | 0.008 (2) |
C6 | 0.088 (4) | 0.098 (4) | 0.071 (4) | 0.003 (3) | 0.030 (3) | 0.001 (3) |
C7 | 0.092 (4) | 0.161 (6) | 0.077 (4) | −0.009 (4) | 0.016 (3) | −0.015 (4) |
C8 | 0.090 (4) | 0.069 (3) | 0.067 (3) | −0.005 (3) | 0.025 (3) | 0.003 (3) |
C9 | 0.137 (6) | 0.140 (6) | 0.069 (4) | −0.033 (4) | 0.039 (4) | 0.000 (5) |
C10 | 0.087 (4) | 0.087 (4) | 0.071 (3) | 0.001 (3) | 0.036 (3) | 0.020 (3) |
C11 | 0.125 (5) | 0.082 (4) | 0.076 (4) | 0.014 (3) | 0.054 (4) | 0.030 (4) |
C12 | 0.116 (5) | 0.149 (7) | 0.079 (4) | 0.012 (4) | 0.017 (4) | 0.024 (5) |
C13 | 0.069 (3) | 0.075 (3) | 0.074 (3) | 0.000 (3) | 0.036 (2) | 0.006 (3) |
C14 | 0.084 (4) | 0.081 (4) | 0.108 (4) | −0.003 (3) | 0.046 (3) | 0.013 (3) |
S2 | 0.0789 (7) | 0.0549 (6) | 0.0570 (6) | 0.0025 (5) | 0.0350 (5) | 0.0060 (6) |
O21 | 0.0597 (17) | 0.0695 (19) | 0.0547 (16) | 0.0044 (13) | 0.0320 (14) | 0.0082 (14) |
O22 | 0.080 (2) | 0.0643 (18) | 0.080 (2) | −0.0035 (16) | 0.0514 (18) | −0.0061 (17) |
O23 | 0.105 (3) | 0.095 (3) | 0.118 (3) | −0.019 (2) | 0.079 (2) | −0.014 (2) |
O24 | 0.0570 (18) | 0.079 (2) | 0.0675 (18) | −0.0007 (16) | 0.0246 (16) | 0.0021 (16) |
O25 | 0.129 (4) | 0.086 (3) | 0.124 (4) | −0.026 (3) | 0.017 (3) | −0.016 (3) |
O26 | 0.070 (2) | 0.091 (3) | 0.0701 (19) | −0.0123 (18) | 0.0342 (16) | −0.0047 (18) |
O27 | 0.186 (5) | 0.107 (3) | 0.133 (4) | −0.030 (3) | 0.090 (4) | 0.005 (4) |
O28 | 0.095 (2) | 0.097 (2) | 0.0640 (19) | 0.0000 (19) | 0.0475 (18) | 0.002 (2) |
O29A | 0.14 (3) | 0.077 (17) | 0.066 (10) | 0.025 (8) | 0.016 (13) | 0.010 (13) |
O29B | 0.23 (3) | 0.128 (9) | 0.093 (8) | 0.030 (6) | 0.052 (14) | −0.045 (10) |
C21 | 0.056 (2) | 0.054 (2) | 0.052 (2) | 0.005 (2) | 0.0246 (19) | 0.012 (2) |
C22 | 0.064 (3) | 0.055 (2) | 0.060 (2) | 0.005 (2) | 0.031 (2) | 0.009 (2) |
C23 | 0.067 (3) | 0.058 (3) | 0.068 (3) | 0.005 (2) | 0.041 (2) | 0.010 (2) |
C24 | 0.078 (3) | 0.061 (3) | 0.051 (2) | 0.006 (2) | 0.038 (2) | 0.011 (2) |
C25 | 0.062 (3) | 0.069 (3) | 0.054 (2) | 0.002 (2) | 0.031 (2) | 0.006 (2) |
C26 | 0.081 (3) | 0.070 (3) | 0.092 (3) | −0.006 (3) | 0.055 (3) | −0.001 (3) |
C27 | 0.124 (5) | 0.090 (4) | 0.130 (5) | −0.011 (4) | 0.088 (4) | −0.024 (4) |
C28 | 0.074 (4) | 0.075 (4) | 0.087 (4) | 0.000 (3) | 0.028 (3) | −0.024 (3) |
C29 | 0.073 (3) | 0.137 (5) | 0.086 (4) | 0.028 (4) | 0.013 (3) | −0.014 (4) |
C210 | 0.067 (3) | 0.091 (4) | 0.062 (3) | 0.005 (2) | 0.034 (2) | 0.007 (3) |
C211 | 0.094 (4) | 0.072 (4) | 0.082 (4) | −0.001 (3) | 0.035 (3) | 0.016 (3) |
C212 | 0.145 (6) | 0.086 (4) | 0.176 (7) | −0.019 (4) | 0.089 (6) | −0.021 (4) |
C213 | 0.156 (8) | 0.133 (7) | 0.066 (4) | 0.007 (5) | 0.055 (4) | −0.037 (7) |
C214 | 0.240 (10) | 0.230 (11) | 0.092 (5) | −0.013 (6) | 0.109 (6) | −0.051 (8) |
O31 | 0.397 (14) | 0.285 (12) | 0.252 (10) | 0.024 (9) | 0.148 (11) | 0.016 (11) |
C31 | 0.48 (2) | 0.171 (9) | 0.103 (7) | 0.016 (6) | −0.034 (11) | 0.121 (11) |
C32 | 0.372 (14) | 0.227 (12) | 0.150 (11) | 0.082 (9) | −0.024 (10) | 0.003 (12) |
C33 | 0.352 (13) | 0.214 (10) | 0.069 (5) | 0.032 (5) | 0.011 (7) | 0.003 (10) |
C34 | 0.376 (13) | 0.332 (17) | 0.094 (7) | 0.074 (8) | 0.050 (9) | 0.126 (12) |
S1—C1 | 1.810 (4) | O24—C22 | 1.429 (5) |
S1—S2 | 2.0313 (16) | O25—C28 | 1.182 (7) |
O1—C5 | 1.425 (5) | O26—C211 | 1.339 (6) |
O1—C1 | 1.432 (4) | O26—C210 | 1.427 (5) |
O2—C6 | 1.338 (7) | O27—C211 | 1.183 (6) |
O2—C3 | 1.445 (5) | O28—C213 | 1.349 (8) |
O3—C6 | 1.178 (7) | O28—C24 | 1.427 (5) |
O4—C8 | 1.337 (6) | O29A—C213 | 1.27 (3) |
O4—C2 | 1.410 (5) | O29B—C213 | 1.156 (17) |
O5—C8 | 1.187 (6) | C21—C22 | 1.509 (6) |
O6—C11 | 1.335 (6) | C21—H21 | 0.98 |
O6—C10 | 1.440 (6) | C22—C23 | 1.509 (6) |
O7—C11 | 1.207 (7) | C22—H22 | 0.98 |
O8—C13 | 1.361 (5) | C23—C24 | 1.510 (6) |
O8—C4 | 1.428 (5) | C23—H23 | 0.98 |
O9—C13 | 1.191 (6) | C24—C25 | 1.503 (6) |
C1—C2 | 1.510 (6) | C24—H24 | 0.98 |
C1—H1 | 0.98 | C25—C210 | 1.497 (6) |
C2—C3 | 1.511 (6) | C25—H25 | 0.98 |
C2—H2 | 0.98 | C26—C27 | 1.466 (7) |
C3—C4 | 1.517 (6) | C27—H27A | 0.96 |
C3—H3 | 0.98 | C27—H27B | 0.96 |
C4—C5 | 1.520 (6) | C27—H27C | 0.96 |
C4—H4 | 0.98 | C28—C29 | 1.481 (7) |
C5—C10 | 1.495 (6) | C29—H29A | 0.96 |
C5—H5 | 0.98 | C29—H29B | 0.96 |
C6—C7 | 1.463 (8) | C29—H29C | 0.96 |
C7—H7A | 0.96 | C210—H21A | 0.97 |
C7—H7B | 0.96 | C210—H21B | 0.97 |
C7—H7C | 0.96 | C211—C212 | 1.450 (9) |
C8—C9 | 1.484 (8) | C212—H21C | 0.96 |
C9—H9A | 0.96 | C212—H21D | 0.96 |
C9—H9B | 0.96 | C212—H21E | 0.96 |
C9—H9C | 0.96 | C213—C214 | 1.513 (9) |
C10—H10A | 0.97 | C214—H21F | 0.96 |
C10—H10B | 0.97 | C214—H21G | 0.96 |
C11—C12 | 1.486 (9) | C214—H21H | 0.96 |
C12—H12A | 0.96 | O31—C32 | 1.578 (16) |
C12—H12B | 0.96 | O31—C33 | 1.601 (14) |
C12—H12C | 0.96 | C31—C32 | 1.640 (17) |
C13—C14 | 1.475 (7) | C31—C34 | 1.68 (2) |
C14—H14A | 0.96 | C31—H31A | 0.97 |
C14—H14B | 0.96 | C31—H31B | 0.97 |
C14—H14C | 0.96 | C32—H32A | 0.97 |
S2—C21 | 1.823 (4) | C32—H32B | 0.97 |
O21—C21 | 1.424 (4) | C33—C34 | 1.601 (15) |
O21—C25 | 1.434 (4) | C33—H33A | 0.97 |
O22—C26 | 1.337 (5) | C33—H33B | 0.97 |
O22—C23 | 1.437 (5) | C34—H34A | 0.97 |
O23—C26 | 1.196 (6) | C34—H34B | 0.97 |
O24—C28 | 1.326 (6) | ||
C1—S1—S2 | 104.17 (14) | C21—C22—C23 | 110.7 (4) |
C5—O1—C1 | 112.2 (3) | O24—C22—H22 | 109.5 |
C6—O2—C3 | 119.4 (4) | C21—C22—H22 | 109.5 |
C8—O4—C2 | 118.8 (4) | C23—C22—H22 | 109.5 |
C11—O6—C10 | 117.9 (5) | O22—C23—C22 | 105.8 (3) |
C13—O8—C4 | 117.6 (3) | O22—C23—C24 | 110.7 (4) |
O1—C1—C2 | 108.7 (3) | C22—C23—C24 | 111.6 (3) |
O1—C1—S1 | 107.5 (3) | O22—C23—H23 | 109.6 |
C2—C1—S1 | 116.9 (3) | C22—C23—H23 | 109.6 |
O1—C1—H1 | 107.8 | C24—C23—H23 | 109.6 |
C2—C1—H1 | 107.8 | O28—C24—C25 | 107.8 (3) |
S1—C1—H1 | 107.8 | O28—C24—C23 | 108.8 (3) |
O4—C2—C1 | 109.0 (3) | C25—C24—C23 | 112.4 (3) |
O4—C2—C3 | 110.0 (3) | O28—C24—H24 | 109.3 |
C1—C2—C3 | 108.8 (3) | C25—C24—H24 | 109.3 |
O4—C2—H2 | 109.7 | C23—C24—H24 | 109.3 |
C1—C2—H2 | 109.7 | O21—C25—C210 | 106.7 (3) |
C3—C2—H2 | 109.7 | O21—C25—C24 | 108.2 (3) |
O2—C3—C2 | 109.1 (3) | C210—C25—C24 | 111.5 (4) |
O2—C3—C4 | 108.3 (3) | O21—C25—H25 | 110.1 |
C2—C3—C4 | 110.6 (3) | C210—C25—H25 | 110.1 |
O2—C3—H3 | 109.6 | C24—C25—H25 | 110.1 |
C2—C3—H3 | 109.6 | O23—C26—O22 | 123.2 (5) |
C4—C3—H3 | 109.6 | O23—C26—C27 | 125.0 (4) |
O8—C4—C3 | 108.4 (3) | O22—C26—C27 | 111.8 (4) |
O8—C4—C5 | 110.3 (3) | C26—C27—H27A | 109.5 |
C3—C4—C5 | 108.4 (3) | C26—C27—H27B | 109.5 |
O8—C4—H4 | 109.9 | H27A—C27—H27B | 109.5 |
C3—C4—H4 | 109.9 | C26—C27—H27C | 109.5 |
C5—C4—H4 | 109.9 | H27A—C27—H27C | 109.5 |
O1—C5—C10 | 107.2 (3) | H27B—C27—H27C | 109.5 |
O1—C5—C4 | 108.3 (3) | O25—C28—O24 | 123.3 (5) |
C10—C5—C4 | 113.1 (4) | O25—C28—C29 | 126.1 (6) |
O1—C5—H5 | 109.4 | O24—C28—C29 | 110.6 (5) |
C10—C5—H5 | 109.4 | C28—C29—H29A | 109.5 |
C4—C5—H5 | 109.4 | C28—C29—H29B | 109.5 |
O3—C6—O2 | 121.9 (6) | H29A—C29—H29B | 109.5 |
O3—C6—C7 | 125.7 (6) | C28—C29—H29C | 109.5 |
O2—C6—C7 | 112.4 (6) | H29A—C29—H29C | 109.5 |
C6—C7—H7A | 109.5 | H29B—C29—H29C | 109.5 |
C6—C7—H7B | 109.5 | O26—C210—C25 | 111.0 (4) |
H7A—C7—H7B | 109.5 | O26—C210—H21A | 109.4 |
C6—C7—H7C | 109.5 | C25—C210—H21A | 109.4 |
H7A—C7—H7C | 109.5 | O26—C210—H21B | 109.4 |
H7B—C7—H7C | 109.5 | C25—C210—H21B | 109.4 |
O5—C8—O4 | 123.3 (5) | H21A—C210—H21B | 108 |
O5—C8—C9 | 124.9 (6) | O27—C211—O26 | 122.4 (6) |
O4—C8—C9 | 111.8 (5) | O27—C211—C212 | 126.2 (6) |
C8—C9—H9A | 109.5 | O26—C211—C212 | 111.2 (5) |
C8—C9—H9B | 109.5 | C211—C212—H21C | 109.5 |
H9A—C9—H9B | 109.5 | C211—C212—H21D | 109.5 |
C8—C9—H9C | 109.5 | H21C—C212—H21D | 109.5 |
H9A—C9—H9C | 109.5 | C211—C212—H21E | 109.5 |
H9B—C9—H9C | 109.5 | H21C—C212—H21E | 109.5 |
O6—C10—C5 | 109.3 (4) | H21D—C212—H21E | 109.5 |
O6—C10—H10A | 109.8 | O29B—C213—O29A | 43.8 (10) |
C5—C10—H10A | 109.8 | O29B—C213—O28 | 121.9 (11) |
O6—C10—H10B | 109.8 | O29A—C213—O28 | 118.7 (18) |
C5—C10—H10B | 109.8 | O29B—C213—C214 | 123.7 (11) |
H10A—C10—H10B | 108.3 | O29A—C213—C214 | 125.3 (12) |
O7—C11—O6 | 122.0 (6) | O28—C213—C214 | 109.4 (8) |
O7—C11—C12 | 126.3 (6) | C213—C214—H21F | 109.5 |
O6—C11—C12 | 111.6 (6) | C213—C214—H21G | 109.5 |
C11—C12—H12A | 109.5 | H21F—C214—H21G | 109.5 |
C11—C12—H12B | 109.5 | C213—C214—H21H | 109.5 |
H12A—C12—H12B | 109.5 | H21F—C214—H21H | 109.5 |
C11—C12—H12C | 109.5 | H21G—C214—H21H | 109.5 |
H12A—C12—H12C | 109.5 | C32—O31—C33 | 108.0 (14) |
H12B—C12—H12C | 109.5 | C32—C31—C34 | 109.3 (9) |
O9—C13—O8 | 122.3 (4) | C32—C31—H31A | 109.8 |
O9—C13—C14 | 125.9 (4) | C34—C31—H31A | 109.8 |
O8—C13—C14 | 111.8 (5) | C32—C31—H31B | 109.8 |
C13—C14—H14A | 109.5 | C34—C31—H31B | 109.8 |
C13—C14—H14B | 109.5 | H31A—C31—H31B | 108.3 |
H14A—C14—H14B | 109.5 | O31—C32—C31 | 107.2 (12) |
C13—C14—H14C | 109.5 | O31—C32—H32A | 110.3 |
H14A—C14—H14C | 109.5 | C31—C32—H32A | 110.3 |
H14B—C14—H14C | 109.5 | O31—C32—H32B | 110.3 |
C21—S2—S1 | 104.10 (15) | C31—C32—H32B | 110.3 |
C21—O21—C25 | 111.7 (3) | H32A—C32—H32B | 108.5 |
C26—O22—C23 | 120.0 (4) | C34—C33—O31 | 112.7 (12) |
C28—O24—C22 | 118.2 (4) | C34—C33—H33A | 109.1 |
C211—O26—C210 | 118.4 (4) | O31—C33—H33A | 109 |
C213—O28—C24 | 118.9 (5) | C34—C33—H33B | 109.1 |
O21—C21—C22 | 108.8 (3) | O31—C33—H33B | 109 |
O21—C21—S2 | 108.9 (2) | H33A—C33—H33B | 107.8 |
C22—C21—S2 | 108.6 (3) | C33—C34—C31 | 102.6 (10) |
O21—C21—H21 | 110.2 | C33—C34—H34A | 111.2 |
C22—C21—H21 | 110.2 | C31—C34—H34A | 111.3 |
S2—C21—H21 | 110.2 | C33—C34—H34B | 111.2 |
O24—C22—C21 | 108.6 (3) | C31—C34—H34B | 111.3 |
O24—C22—C23 | 108.9 (3) | H34A—C34—H34B | 109.2 |
C5—O1—C1—C2 | −64.8 (4) | S1—S2—C21—C22 | 156.3 (2) |
C5—O1—C1—S1 | 167.8 (3) | C28—O24—C22—C21 | 116.5 (4) |
S2—S1—C1—O1 | 74.3 (3) | C28—O24—C22—C23 | −122.8 (4) |
S2—S1—C1—C2 | −48.2 (3) | O21—C21—C22—O24 | 176.3 (3) |
C8—O4—C2—C1 | 137.4 (4) | S2—C21—C22—O24 | −65.2 (3) |
C8—O4—C2—C3 | −103.4 (4) | O21—C21—C22—C23 | 56.8 (4) |
O1—C1—C2—O4 | 178.3 (3) | S2—C21—C22—C23 | 175.2 (3) |
S1—C1—C2—O4 | −59.9 (4) | C26—O22—C23—C22 | −138.6 (4) |
O1—C1—C2—C3 | 58.3 (4) | C26—O22—C23—C24 | 100.4 (4) |
S1—C1—C2—C3 | −179.9 (3) | O24—C22—C23—O22 | 71.7 (4) |
C6—O2—C3—C2 | −118.1 (4) | C21—C22—C23—O22 | −169.0 (3) |
C6—O2—C3—C4 | 121.5 (4) | O24—C22—C23—C24 | −167.9 (4) |
O4—C2—C3—O2 | 65.7 (4) | C21—C22—C23—C24 | −48.5 (5) |
C1—C2—C3—O2 | −175.0 (3) | C213—O28—C24—C25 | −128.2 (6) |
O4—C2—C3—C4 | −175.3 (3) | C213—O28—C24—C23 | 109.8 (6) |
C1—C2—C3—C4 | −56.0 (4) | O22—C23—C24—O28 | −75.1 (4) |
C13—O8—C4—C3 | 142.4 (4) | C22—C23—C24—O28 | 167.4 (4) |
C13—O8—C4—C5 | −99.0 (4) | O22—C23—C24—C25 | 165.7 (3) |
O2—C3—C4—O8 | −64.5 (4) | C22—C23—C24—C25 | 48.1 (5) |
C2—C3—C4—O8 | 175.9 (3) | C21—O21—C25—C210 | −175.0 (4) |
O2—C3—C4—C5 | 175.6 (3) | C21—O21—C25—C24 | 64.9 (4) |
C2—C3—C4—C5 | 56.1 (4) | O28—C24—C25—O21 | −174.4 (3) |
C1—O1—C5—C10 | −172.6 (4) | C23—C24—C25—O21 | −54.6 (4) |
C1—O1—C5—C4 | 65.0 (4) | O28—C24—C25—C210 | 68.6 (4) |
O8—C4—C5—O1 | −177.4 (3) | C23—C24—C25—C210 | −171.6 (4) |
C3—C4—C5—O1 | −58.8 (4) | C23—O22—C26—O23 | −3.7 (8) |
O8—C4—C5—C10 | 63.9 (5) | C23—O22—C26—C27 | 177.8 (4) |
C3—C4—C5—C10 | −177.6 (4) | C22—O24—C28—O25 | 5.0 (7) |
C3—O2—C6—O3 | −2.4 (8) | C22—O24—C28—C29 | −173.7 (4) |
C3—O2—C6—C7 | 176.9 (4) | C211—O26—C210—C25 | 93.8 (5) |
C2—O4—C8—O5 | 2.4 (7) | O21—C25—C210—O26 | 52.3 (5) |
C2—O4—C8—C9 | −178.6 (4) | C24—C25—C210—O26 | 170.2 (4) |
C11—O6—C10—C5 | −102.8 (5) | C210—O26—C211—O27 | −1.1 (8) |
O1—C5—C10—O6 | 60.9 (5) | C210—O26—C211—C212 | −177.6 (5) |
C4—C5—C10—O6 | −179.8 (4) | C24—O28—C213—O29B | −20 (3) |
C10—O6—C11—O7 | −3.9 (7) | C24—O28—C213—O29A | 31 (3) |
C10—O6—C11—C12 | 174.3 (4) | C24—O28—C213—C214 | −176.2 (6) |
C4—O8—C13—O9 | −6.1 (7) | C33—O31—C32—C31 | 5.7 (13) |
C4—O8—C13—C14 | 172.9 (4) | C34—C31—C32—O31 | −4.8 (14) |
C1—S1—S2—C21 | −80.25 (19) | C32—O31—C33—C34 | −4.8 (13) |
C25—O21—C21—C22 | −66.6 (4) | O31—C33—C34—C31 | 1.7 (12) |
C25—O21—C21—S2 | 175.1 (3) | C32—C31—C34—C33 | 1.9 (12) |
S1—S2—C21—O21 | −85.4 (3) |
Experimental details
Crystal data | |
Chemical formula | C28H38O18S2·C4H8O |
Mr | 798.81 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 298 |
a, b, c (Å) | 14.6499 (14), 10.0096 (10), 15.4029 (15) |
β (°) | 113.573 (2) |
V (Å3) | 2070.2 (4) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.20 |
Crystal size (mm) | 0.40 × 0.30 × 0.20 |
Data collection | |
Diffractometer | Nonius KappaCCD area-detector diffractometer |
Absorption correction | Multi-scan (SORTAV; Blessing, 1995) |
Tmin, Tmax | 0.920, 0.960 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13257, 7410, 4763 |
Rint | 0.046 |
(sin θ/λ)max (Å−1) | 0.599 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.054, 0.151, 0.85 |
No. of reflections | 7410 |
No. of parameters | 497 |
No. of restraints | 45 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.34, −0.19 |
Absolute structure | Flack, (1983), 3438 Friedel pairs |
Absolute structure parameter | 0.02 (9) |
Computer programs: COLLECT (Nonius, 2000), DENZO-SMN (Otwinowski & Minor, 1997), DENZO-SMN(Otwinowski & Minor, 1997), SIR97 (Altomare et al., 1999), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2003), WinGX (Farrugia, 1999).
S1—C1 | 1.810 (4) | S2—C21 | 1.823 (4) |
S1—S2 | 2.0313 (16) | ||
C1—S1—S2 | 104.17 (14) | O1—C1—S1 | 107.5 (3) |
C1—S1—S2—C21 | −80.25 (19) |
Acknowledgements
This study was supported by grants from the Hungarian National Science Fund [OTKA T48713 (to LSz)]. We thank the Spanish Research Council (CSIC) for providing us with a free-of-charge licence for the Cambridge Structural Database.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The disulfide linkage which plays an essential role in stabilizing the tertiary structure of proteins, was not known in carbohydrate chemistry until recently when it was introduced as a new interglycosidic connecting element (Szilágyi & Varela, 2006). Diglycosyl disulfides were proposed as novel carbohydrate scaffolds with potential biological activity (Szilágyi & Varela, 2006, Chakka et al., 2005). This has recently been demonstrated in binding studies with galectins and in assays with tumor cells (André et al., 2006). We report herein the crystal and molecular structure of the title compound, (I), Fig. 1. The averaged bond lengths [C—O 1.429 (6), O—C 1.341 (8), C=O 1.181 (8), C—C 1.478 (10) Å] and other parameters, Table 1, compare well with those for the previously determined unsolvated form (Brito et al., 2006). The pyranosyl rings adopt chair conformations with Cremer & Pople (1975) puckering parameters: QT = 0.604 (6) (Glc) and 0.566 (5) Å (Gal), θ = 2.4 (5) (Glc) and 9.6 (6)°(Gal), ϕ = 15 (11) (Glc) and 9(4)° (Gal); these parameters are similar to those for the unsolvated form. The conformations of the acetyl groups are in agreement with the observation that in acetylated pyranoses, the carbonyl C=O bonds tend to align so that they nearly eclipse the axial-H atoms atoms on the common ring C atoms.