organic compounds
5-(2,6-Dimethoxyphenoxy)-2-methylsulfanylmethyl-2H-tetrazole
aDepartment of Chemistry, Faculty of Science, Urmia University, 57159 Urmia, Iran, and bDepartment of Chemistry, University of British Columbia, Vancouver, BC, Canada V6T 1Z1
*Correspondence e-mail: pesyan@gmail.com
In the title molecule, C11H14N4O3S, the tetrazole and benzene rings are nearly perpendicular to each other, forming a dihedral angle of 104.93 (14)°. The crystal packing exhibits weak intermolecular C—H⋯O hydrogen bonds.
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2008); cell APEX2; data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SIR (Altomare et al., 1999); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536809006138/cv2515sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809006138/cv2515Isup2.hkl
Dry DMSO, 5 ml, was added dropwise over a period of 30 min to a solution of 0.143 g of compound in 4 ml of acetic anhydride. The mixture was stirred for 40 h at 45–50°C, excess DMSO and acetic anhydride were removed under reduced pressure, and the residue was washed with several 2–3-ml portions of water. The precipitate was dissolved in 20 ml of methylene chloride, the solution was dried over calcium chloride and evaporated, and the residue was separated by ν, cm-1: 3050, 2975, 1590, 1530, 1390, 1370, 1300, 1260, 1180, 1110, 760. 1H NMR (300 MHz, DMSO-d6), δ: 7.14 (t, 1H, J = 10 Hz), 6.65 (d, 2H, J = 10 Hz), 5.48 (s, 2H), 3.71 (s, 6H), 2.17 (s, 3H). 13 C NMR (75 MHz, DMSO-d6), δ: 177.50, 152.29, 131.80, 126.74, 105.44, 78.88, 56.20, 56.03, 15.48. (EI), m/z (Irel, %) 284 (0.6) [M + 2]+, 282 (15) [M]+, 281 (20), 236 (83), 151 (73), 140 (39), 107 (59), 43 (100).
on silica gel to isolate compound. Yield 20%. IR spectrum (KBr),All H atoms were geometrically positioned (C—H 0.95–0.99 Å), and allowed to ride on their parent atoms, with Uiso(H) = 1.2–1.5 Ueq(C).
Data collection: APEX2 (Bruker, 2008); cell
APEX2 (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SIR (Altomare et al., 1999); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound showing the atomic numbering and 50% probability displacement ellipsoids. |
C11H14N4O3S | F(000) = 592 |
Mr = 282.32 | Dx = 1.403 Mg m−3 |
Orthorhombic, Pca21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2c -2ac | Cell parameters from 4562 reflections |
a = 12.1795 (5) Å | θ = 2.8–27.8° |
b = 11.0809 (4) Å | µ = 0.25 mm−1 |
c = 9.9026 (4) Å | T = 173 K |
V = 1336.45 (9) Å3 | Irregular, colourless |
Z = 4 | 0.50 × 0.25 × 0.10 mm |
Bruker X8 APEXII diffractometer | 2873 independent reflections |
Radiation source: fine-focus sealed tube | 2670 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.020 |
Area–detector scans | θmax = 28.0°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −16→15 |
Tmin = 0.871, Tmax = 0.975 | k = −14→14 |
7950 measured reflections | l = −12→12 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.026 | H-atom parameters constrained |
wR(F2) = 0.067 | w = 1/[σ2(Fo2) + (0.0323P)2 + 0.1529P] where P = (Fo2 + 2Fc2)/3 |
S = 1.08 | (Δ/σ)max = 0.002 |
2873 reflections | Δρmax = 0.18 e Å−3 |
175 parameters | Δρmin = −0.15 e Å−3 |
1 restraint | Absolute structure: Flack (1983), 1220 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.06 (6) |
C11H14N4O3S | V = 1336.45 (9) Å3 |
Mr = 282.32 | Z = 4 |
Orthorhombic, Pca21 | Mo Kα radiation |
a = 12.1795 (5) Å | µ = 0.25 mm−1 |
b = 11.0809 (4) Å | T = 173 K |
c = 9.9026 (4) Å | 0.50 × 0.25 × 0.10 mm |
Bruker X8 APEXII diffractometer | 2873 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 2670 reflections with I > 2σ(I) |
Tmin = 0.871, Tmax = 0.975 | Rint = 0.020 |
7950 measured reflections |
R[F2 > 2σ(F2)] = 0.026 | H-atom parameters constrained |
wR(F2) = 0.067 | Δρmax = 0.18 e Å−3 |
S = 1.08 | Δρmin = −0.15 e Å−3 |
2873 reflections | Absolute structure: Flack (1983), 1220 Friedel pairs |
175 parameters | Absolute structure parameter: 0.06 (6) |
1 restraint |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.56871 (11) | 0.77249 (11) | 0.88143 (15) | 0.0219 (3) | |
C2 | 0.65815 (12) | 0.75439 (12) | 0.96546 (15) | 0.0236 (3) | |
C3 | 0.74485 (12) | 0.83700 (14) | 0.96021 (18) | 0.0282 (3) | |
H3 | 0.8075 | 0.8264 | 1.0161 | 0.034* | |
C4 | 0.73884 (12) | 0.93401 (13) | 0.87333 (17) | 0.0296 (3) | |
H4 | 0.7984 | 0.9893 | 0.8700 | 0.035* | |
C5 | 0.64873 (13) | 0.95357 (13) | 0.79062 (17) | 0.0279 (3) | |
H5 | 0.6460 | 1.0215 | 0.7322 | 0.033* | |
C6 | 0.56210 (12) | 0.87112 (12) | 0.79505 (15) | 0.0244 (3) | |
C7 | 0.74036 (16) | 0.64203 (15) | 1.1436 (2) | 0.0417 (4) | |
H7A | 0.8086 | 0.6213 | 1.0966 | 0.063* | |
H7B | 0.7216 | 0.5776 | 1.2073 | 0.063* | |
H7C | 0.7503 | 0.7179 | 1.1930 | 0.063* | |
C8 | 0.45668 (14) | 0.97946 (14) | 0.6331 (2) | 0.0388 (4) | |
H8A | 0.4621 | 1.0539 | 0.6861 | 0.058* | |
H8B | 0.3848 | 0.9761 | 0.5887 | 0.058* | |
H8C | 0.5148 | 0.9782 | 0.5646 | 0.058* | |
C9 | 0.39202 (11) | 0.70979 (11) | 0.94053 (14) | 0.0213 (3) | |
C10 | 0.12256 (13) | 0.65157 (14) | 1.0324 (2) | 0.0334 (3) | |
H10A | 0.0972 | 0.6804 | 1.1217 | 0.040* | |
H10B | 0.1216 | 0.5622 | 1.0341 | 0.040* | |
C11 | 0.05905 (16) | 0.59888 (17) | 0.77160 (19) | 0.0451 (4) | |
H11A | 0.1360 | 0.6080 | 0.7445 | 0.068* | |
H11B | 0.0113 | 0.6157 | 0.6941 | 0.068* | |
H11C | 0.0464 | 0.5162 | 0.8031 | 0.068* | |
N1 | 0.30621 (9) | 0.63680 (9) | 0.92891 (14) | 0.0250 (3) | |
N2 | 0.23531 (10) | 0.69247 (10) | 1.01082 (14) | 0.0266 (3) | |
N3 | 0.27358 (11) | 0.79161 (11) | 1.06706 (16) | 0.0328 (3) | |
N4 | 0.37580 (11) | 0.80385 (11) | 1.02308 (15) | 0.0298 (3) | |
O1 | 0.65369 (8) | 0.65558 (9) | 1.04724 (12) | 0.0297 (2) | |
O2 | 0.46880 (9) | 0.87735 (9) | 0.72061 (12) | 0.0316 (3) | |
O3 | 0.48597 (8) | 0.68410 (8) | 0.87649 (10) | 0.0231 (2) | |
S1 | 0.02856 (3) | 0.70315 (4) | 0.90562 (6) | 0.04717 (14) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0180 (6) | 0.0215 (6) | 0.0261 (8) | −0.0025 (5) | 0.0015 (6) | −0.0033 (5) |
C2 | 0.0226 (7) | 0.0245 (6) | 0.0237 (8) | 0.0029 (5) | 0.0009 (6) | −0.0048 (5) |
C3 | 0.0182 (7) | 0.0354 (7) | 0.0310 (9) | −0.0003 (5) | −0.0019 (6) | −0.0091 (6) |
C4 | 0.0239 (7) | 0.0294 (7) | 0.0354 (9) | −0.0069 (5) | 0.0059 (6) | −0.0086 (6) |
C5 | 0.0292 (7) | 0.0237 (6) | 0.0308 (8) | −0.0041 (5) | 0.0051 (6) | −0.0009 (6) |
C6 | 0.0239 (7) | 0.0249 (6) | 0.0243 (8) | 0.0007 (5) | 0.0008 (6) | −0.0018 (5) |
C7 | 0.0426 (10) | 0.0425 (8) | 0.0400 (10) | 0.0014 (8) | −0.0177 (9) | 0.0046 (8) |
C8 | 0.0417 (9) | 0.0323 (8) | 0.0425 (10) | −0.0001 (7) | −0.0069 (9) | 0.0140 (7) |
C9 | 0.0203 (6) | 0.0197 (5) | 0.0238 (8) | 0.0018 (5) | −0.0028 (6) | 0.0026 (5) |
C10 | 0.0221 (7) | 0.0346 (7) | 0.0436 (9) | −0.0046 (6) | 0.0078 (7) | −0.0024 (7) |
C11 | 0.0453 (11) | 0.0475 (10) | 0.0423 (11) | −0.0133 (8) | −0.0079 (9) | 0.0117 (8) |
N1 | 0.0201 (5) | 0.0251 (5) | 0.0298 (7) | −0.0018 (4) | 0.0008 (5) | −0.0012 (5) |
N2 | 0.0209 (6) | 0.0257 (6) | 0.0332 (8) | −0.0011 (5) | 0.0028 (5) | −0.0010 (5) |
N3 | 0.0267 (6) | 0.0288 (6) | 0.0430 (9) | −0.0028 (5) | 0.0053 (6) | −0.0072 (5) |
N4 | 0.0244 (6) | 0.0267 (6) | 0.0382 (8) | −0.0030 (5) | 0.0022 (6) | −0.0059 (5) |
O1 | 0.0279 (6) | 0.0299 (5) | 0.0312 (6) | 0.0007 (4) | −0.0075 (5) | 0.0025 (4) |
O2 | 0.0296 (6) | 0.0292 (5) | 0.0361 (7) | −0.0045 (4) | −0.0102 (5) | 0.0098 (4) |
O3 | 0.0187 (5) | 0.0204 (4) | 0.0302 (6) | −0.0028 (3) | −0.0003 (4) | −0.0023 (4) |
S1 | 0.02395 (18) | 0.0424 (2) | 0.0752 (4) | 0.00636 (16) | −0.0048 (2) | 0.0022 (2) |
C1—O3 | 1.4062 (15) | C7—H7B | 0.9800 |
C9—O3 | 1.3388 (17) | C7—H7C | 0.9800 |
N2—C10 | 1.4618 (19) | C8—O2 | 1.4330 (18) |
S1—C10 | 1.792 (2) | C8—H8A | 0.9800 |
C6—O2 | 1.3562 (18) | C8—H8B | 0.9800 |
C2—O1 | 1.3630 (17) | C8—H8C | 0.9800 |
C1—C2 | 1.385 (2) | C9—N1 | 1.3265 (17) |
C1—C6 | 1.390 (2) | C9—N4 | 1.3393 (18) |
C2—C3 | 1.399 (2) | C10—H10A | 0.9900 |
C3—C4 | 1.379 (2) | C10—H10B | 0.9900 |
C3—H3 | 0.9500 | C11—S1 | 1.798 (2) |
C4—C5 | 1.386 (2) | C11—H11A | 0.9800 |
C4—H4 | 0.9500 | C11—H11B | 0.9800 |
C5—C6 | 1.3964 (19) | C11—H11C | 0.9800 |
C5—H5 | 0.9500 | N1—N2 | 1.3357 (17) |
C7—O1 | 1.431 (2) | N2—N3 | 1.3169 (17) |
C7—H7A | 0.9800 | N3—N4 | 1.3260 (18) |
C9—O3—C1 | 116.61 (10) | O2—C8—H8B | 109.5 |
N2—C10—S1 | 113.52 (12) | H8A—C8—H8B | 109.5 |
C10—S1—C11 | 100.37 (9) | O2—C8—H8C | 109.5 |
C2—C1—C6 | 121.93 (12) | H8A—C8—H8C | 109.5 |
C2—C1—O3 | 118.92 (12) | H8B—C8—H8C | 109.5 |
C6—C1—O3 | 118.99 (12) | N1—C9—O3 | 120.17 (11) |
O1—C2—C1 | 116.22 (12) | N1—C9—N4 | 114.28 (12) |
O1—C2—C3 | 125.32 (13) | O3—C9—N4 | 125.50 (12) |
C1—C2—C3 | 118.47 (13) | N2—C10—H10A | 108.9 |
C4—C3—C2 | 119.57 (14) | S1—C10—H10A | 108.9 |
C4—C3—H3 | 120.2 | N2—C10—H10B | 108.9 |
C2—C3—H3 | 120.2 | S1—C10—H10B | 108.9 |
C3—C4—C5 | 122.18 (13) | H10A—C10—H10B | 107.7 |
C3—C4—H4 | 118.9 | S1—C11—H11A | 109.5 |
C5—C4—H4 | 118.9 | S1—C11—H11B | 109.5 |
C4—C5—C6 | 118.51 (14) | H11A—C11—H11B | 109.5 |
C4—C5—H5 | 120.7 | S1—C11—H11C | 109.5 |
C6—C5—H5 | 120.7 | H11A—C11—H11C | 109.5 |
O2—C6—C1 | 115.02 (12) | H11B—C11—H11C | 109.5 |
O2—C6—C5 | 125.64 (13) | C9—N1—N2 | 100.09 (11) |
C1—C6—C5 | 119.33 (14) | N3—N2—N1 | 114.41 (12) |
O1—C7—H7A | 109.5 | N3—N2—C10 | 121.96 (13) |
O1—C7—H7B | 109.5 | N1—N2—C10 | 123.56 (12) |
H7A—C7—H7B | 109.5 | N2—N3—N4 | 106.18 (12) |
O1—C7—H7C | 109.5 | N3—N4—C9 | 105.04 (12) |
H7A—C7—H7C | 109.5 | C2—O1—C7 | 116.81 (12) |
H7B—C7—H7C | 109.5 | C6—O2—C8 | 117.09 (12) |
O2—C8—H8A | 109.5 | ||
C6—C1—O3—C9 | −79.52 (17) | N4—C9—N1—N2 | −0.13 (16) |
N4—C9—O3—C1 | −9.6 (2) | C9—N1—N2—N3 | 0.54 (16) |
C6—C1—C2—O1 | 178.73 (13) | C9—N1—N2—C10 | 177.63 (14) |
O3—C1—C2—O1 | −5.86 (18) | S1—C10—N2—N3 | 93.31 (17) |
C6—C1—C2—C3 | −1.4 (2) | S1—C10—N2—N1 | −83.56 (15) |
O3—C1—C2—C3 | 174.02 (13) | N1—N2—N3—N4 | −0.76 (18) |
O1—C2—C3—C4 | −179.56 (14) | C10—N2—N3—N4 | −177.90 (15) |
C1—C2—C3—C4 | 0.6 (2) | N2—N3—N4—C9 | 0.60 (17) |
C2—C3—C4—C5 | 0.5 (2) | N1—C9—N4—N3 | −0.31 (17) |
C3—C4—C5—C6 | −0.7 (2) | O3—C9—N4—N3 | −177.81 (14) |
C2—C1—C6—O2 | −179.07 (13) | C1—C2—O1—C7 | −174.19 (14) |
O3—C1—C6—O2 | 5.51 (18) | C3—C2—O1—C7 | 5.9 (2) |
C2—C1—C6—C5 | 1.2 (2) | C1—C6—O2—C8 | 178.13 (14) |
O3—C1—C6—C5 | −174.26 (13) | C5—C6—O2—C8 | −2.1 (2) |
C4—C5—C6—O2 | −179.84 (14) | N1—C9—O3—C1 | 173.03 (12) |
C4—C5—C6—C1 | −0.1 (2) | C2—C1—O3—C9 | 104.93 (14) |
O3—C9—N1—N2 | 177.52 (12) | N2—C10—S1—C11 | 78.85 (13) |
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10B···O1i | 0.99 | 2.45 | 3.4277 (19) | 170 |
C11—H11C···O3i | 0.98 | 2.45 | 3.421 (2) | 172 |
C11—H11B···O1ii | 0.98 | 2.52 | 3.471 (2) | 163 |
C10—H10A···O2iii | 0.99 | 2.52 | 3.312 (2) | 137 |
Symmetry codes: (i) x−1/2, −y+1, z; (ii) −x+1/2, y, z−1/2; (iii) −x+1/2, y, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C11H14N4O3S |
Mr | 282.32 |
Crystal system, space group | Orthorhombic, Pca21 |
Temperature (K) | 173 |
a, b, c (Å) | 12.1795 (5), 11.0809 (4), 9.9026 (4) |
V (Å3) | 1336.45 (9) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.25 |
Crystal size (mm) | 0.50 × 0.25 × 0.10 |
Data collection | |
Diffractometer | Bruker X8 APEXII diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2008) |
Tmin, Tmax | 0.871, 0.975 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7950, 2873, 2670 |
Rint | 0.020 |
(sin θ/λ)max (Å−1) | 0.661 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.026, 0.067, 1.08 |
No. of reflections | 2873 |
No. of parameters | 175 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.18, −0.15 |
Absolute structure | Flack (1983), 1220 Friedel pairs |
Absolute structure parameter | 0.06 (6) |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SIR (Altomare et al., 1999), SHELXTL (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997).
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10B···O1i | 0.99 | 2.448 | 3.4277 (19) | 169.92 |
C11—H11C···O3i | 0.98 | 2.449 | 3.421 (2) | 171.53 |
C11—H11B···O1ii | 0.98 | 2.520 | 3.471 (2) | 163.31 |
C10—H10A···O2iii | 0.99 | 2.524 | 3.312 (2) | 136.50 |
Symmetry codes: (i) x−1/2, −y+1, z; (ii) −x+1/2, y, z−1/2; (iii) −x+1/2, y, z+1/2. |
Acknowledgements
The authors thank the Urmia University Research Council for supporting this work. We also gratefully acknowledge the Structural Chemistry Facility of the University of British Columbia.
References
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Dabbagh, H. A., Noroozi Pesyan, N., Bagheri, A., Takemoto, S. & Hayashi, H. (2005). Russ. J. Org. Chem. 41, 1055–1063. Web of Science CrossRef CAS Google Scholar
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In continuation of our structural study of tetrazole derivatives (Dabbagh et al., 2005) we report herein the structure of the title compound, (I).
In (I) (Fig. 1), the methylsulfanylmethylation proceeded at N2 atom on tetrazole ring. Because of the conjugation of O3 with tetrazole ring the bond distance O3—C9 [1.3388 (17) Å] is obviously shorter than O3—C1 [1.4062 (15) Å]. A similar effect has been found in 5-(4-nitrophenoxy)-1-methylsulfanylmethyl-1H-tetrazole (Dabbagh et al., 2005). Tetrazole ring in (I) is planar, and 2,6-dimethoxyphenoxy group deviates from the tetrazole ring plane so torsion angles C6—C1—O3—C9 and C1—O3—C9—N4 are -79.52 (17)° and -9.6 (2)°, respectively. The torsion angle O3—C1—C2—C3 of 174.02 (13)° implies steric interaction between the benzene and tetrazole rings. The S1—C10 bond [1.792 (2) Å] is slightly shorter than C11—S1 [1.798 (2) Å] in methylsulfanylmethyl group.
The crystal packing exhibits weak intermolecular C—H···O hydrogen bonds (Table 1).