organic compounds
2,2′-(Heptane-1,7-diyl)dibenzimidazolium chloride nitrate monohydrate
aKey Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province, Guizhou University, Guiyang 550025, People's Republic of China, and bInstitute of Applied Chemistry, Guizhou University, Guiyang 550025, People's Republic of China
*Correspondence e-mail: sci.yqzhang@gzu.edu.cn
In the title compound, C21H26N42+·Cl−·NO3−·H2O, the organic cations, anions and water molecules are linked through N—H⋯Cl, N—H⋯O, N—H⋯N and O—H⋯Cl hydrogen bonds, forming a three-dimensional framework, assisted by C—H⋯π interactions.
Related literature
For general background regarding interactions of linear polyaromatic compounds with cucurbit[n]urils, see: Day & Arnold (2000); Day et al. (2002); Freeman et al. (1981); Kim et al. (2000). For the synthesis, see: Wang & Joullié (1957).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536809006370/ez2159sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809006370/ez2159Isup2.hkl
A solution of o-phenylenediamine (5.40 g, 0.05 mol) and azelaic acid (4.71 g, 0.025 mol) were refluxed for twelve hours in 50 ml of 4M HCl. The reaction mixture was then cooled for one day and the blue crystalline 2,2'-(Heptane-1,7-diyl)dibenzimidazolium dihydrochloride which separated was removed by filtration and dried (Wang et al., 1957). Yield: 31%. The dihydrochloride (2.03 g, 5 mmol) and lanthanum nitrate (3.25 g, 10 mmol) were refluxed for three h in 50 ml water, and the mixture was cooled and filtered. Upon standing at room temperature, crystals of title compound (I) were obtained after several days.
The water H atoms were located in a difference Fourier synthesis and refined with distances restrained to O—H = O.82 (2) Å and H—H =1.37 (4) Å, with Uiso(H) =1.2Ueq(O). All other H atoms were placed in calculated positions and refined as riding, with C—H = 0.93–0.97 Å, N—H = 0.86 Å, and with Uiso(H) = 1.2 Ueq (C, N). In the absence of significant
Friedel equivalents (900 pairs) were merged before the final refinement.Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).Fig. 1. The molecular structure of (I), shown with the atom-labelling scheme and 50% probability displacement ellipsoids. |
C21H26N42+·Cl−·NO3−·H2O | F(000) = 952 |
Mr = 449.93 | Dx = 1.315 Mg m−3 |
Orthorhombic, Pca21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2c -2ac | Cell parameters from 3986 reflections |
a = 24.462 (10) Å | θ = 1.7–25.1° |
b = 5.102 (2) Å | µ = 0.21 mm−1 |
c = 18.210 (7) Å | T = 293 K |
V = 2272.5 (15) Å3 | Prism, colorless |
Z = 4 | 0.31 × 0.22 × 0.18 mm |
Bruker SMART APEXII CCD area-detector diffractometer | 2086 independent reflections |
Radiation source: fine-focus sealed tube | 1619 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.063 |
ϕ and ω scans | θmax = 25.1°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −26→29 |
Tmin = 0.939, Tmax = 0.964 | k = −6→6 |
14275 measured reflections | l = −21→21 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.038 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.084 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0385P)2 + 0.1227P] where P = (Fo2 + 2Fc2)/3 |
2086 reflections | (Δ/σ)max < 0.001 |
288 parameters | Δρmax = 0.19 e Å−3 |
5 restraints | Δρmin = −0.17 e Å−3 |
C21H26N42+·Cl−·NO3−·H2O | V = 2272.5 (15) Å3 |
Mr = 449.93 | Z = 4 |
Orthorhombic, Pca21 | Mo Kα radiation |
a = 24.462 (10) Å | µ = 0.21 mm−1 |
b = 5.102 (2) Å | T = 293 K |
c = 18.210 (7) Å | 0.31 × 0.22 × 0.18 mm |
Bruker SMART APEXII CCD area-detector diffractometer | 2086 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 1619 reflections with I > 2σ(I) |
Tmin = 0.939, Tmax = 0.964 | Rint = 0.063 |
14275 measured reflections |
R[F2 > 2σ(F2)] = 0.038 | 5 restraints |
wR(F2) = 0.084 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.19 e Å−3 |
2086 reflections | Δρmin = −0.17 e Å−3 |
288 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.31252 (16) | 0.2574 (8) | 0.5321 (2) | 0.0467 (10) | |
H1 | 0.3358 | 0.1258 | 0.5156 | 0.056* | |
C2 | 0.28978 (16) | 0.4345 (8) | 0.4846 (2) | 0.0538 (11) | |
H2 | 0.2975 | 0.4226 | 0.4347 | 0.065* | |
C3 | 0.25529 (18) | 0.6318 (8) | 0.5097 (3) | 0.0548 (11) | |
H3 | 0.2410 | 0.7496 | 0.4758 | 0.066* | |
C4 | 0.24142 (16) | 0.6603 (7) | 0.5822 (3) | 0.0504 (11) | |
H4 | 0.2180 | 0.7923 | 0.5981 | 0.061* | |
C5 | 0.26436 (14) | 0.4805 (7) | 0.6308 (2) | 0.0409 (9) | |
C6 | 0.29941 (15) | 0.2824 (7) | 0.60581 (19) | 0.0391 (9) | |
C7 | 0.29322 (16) | 0.2498 (7) | 0.7275 (2) | 0.0397 (9) | |
C8 | 0.30248 (17) | 0.1623 (8) | 0.8034 (2) | 0.0487 (10) | |
H8A | 0.3179 | −0.0129 | 0.8023 | 0.058* | |
H8B | 0.2675 | 0.1516 | 0.8282 | 0.058* | |
C9 | 0.34010 (15) | 0.3376 (7) | 0.8482 (2) | 0.0443 (10) | |
H9A | 0.3235 | 0.5092 | 0.8537 | 0.053* | |
H9B | 0.3745 | 0.3594 | 0.8224 | 0.053* | |
C10 | 0.35076 (16) | 0.2195 (7) | 0.9238 (2) | 0.0440 (10) | |
H10A | 0.3159 | 0.1796 | 0.9466 | 0.053* | |
H10B | 0.3703 | 0.0555 | 0.9176 | 0.053* | |
C11 | 0.38324 (16) | 0.3936 (8) | 0.9753 (2) | 0.0445 (10) | |
H11A | 0.3640 | 0.5584 | 0.9818 | 0.053* | |
H11B | 0.4185 | 0.4316 | 0.9534 | 0.053* | |
C12 | 0.39191 (15) | 0.2656 (7) | 1.0503 (2) | 0.0478 (11) | |
H12A | 0.3571 | 0.1985 | 1.0675 | 0.057* | |
H12B | 0.4163 | 0.1173 | 1.0442 | 0.057* | |
C13 | 0.41530 (16) | 0.4448 (8) | 1.1086 (2) | 0.0479 (10) | |
H13A | 0.3891 | 0.5820 | 1.1197 | 0.057* | |
H13B | 0.4483 | 0.5271 | 1.0901 | 0.057* | |
C14 | 0.42850 (16) | 0.2939 (7) | 1.1783 (2) | 0.0475 (9) | |
H14A | 0.3978 | 0.1810 | 1.1899 | 0.057* | |
H14B | 0.4598 | 0.1819 | 1.1688 | 0.057* | |
C15 | 0.44061 (15) | 0.4573 (7) | 1.2432 (2) | 0.0415 (9) | |
C16 | 0.47804 (15) | 0.7535 (7) | 1.3163 (2) | 0.0424 (9) | |
C17 | 0.44065 (15) | 0.6095 (8) | 1.3572 (2) | 0.0442 (10) | |
C18 | 0.43226 (17) | 0.6605 (9) | 1.4312 (2) | 0.0579 (12) | |
H18 | 0.4077 | 0.5627 | 1.4589 | 0.070* | |
C19 | 0.46186 (18) | 0.8618 (10) | 1.4617 (3) | 0.0627 (12) | |
H19 | 0.4571 | 0.9006 | 1.5112 | 0.075* | |
C20 | 0.4989 (2) | 1.0102 (10) | 1.4205 (3) | 0.0607 (12) | |
H20 | 0.5176 | 1.1473 | 1.4428 | 0.073* | |
C21 | 0.50813 (17) | 0.9566 (8) | 1.3469 (2) | 0.0528 (11) | |
H21 | 0.5333 | 1.0519 | 1.3194 | 0.063* | |
N1 | 0.31566 (11) | 0.1448 (6) | 0.66844 (17) | 0.0403 (7) | |
H1A | 0.3371 | 0.0113 | 0.6685 | 0.048* | |
N2 | 0.26120 (12) | 0.4500 (6) | 0.70671 (16) | 0.0417 (8) | |
H2A | 0.2418 | 0.5447 | 0.7357 | 0.050* | |
N3 | 0.41815 (12) | 0.4278 (6) | 1.30898 (16) | 0.0429 (8) | |
H3A | 0.3935 | 0.3142 | 1.3201 | 0.051* | |
N4 | 0.47645 (12) | 0.6521 (6) | 1.24534 (17) | 0.0430 (8) | |
H4A | 0.4956 | 0.7069 | 1.2088 | 0.052* | |
N5 | 0.32105 (13) | 0.8845 (7) | 1.2993 (2) | 0.0466 (8) | |
O1 | 0.32896 (15) | 0.9063 (7) | 1.23308 (19) | 0.0857 (11) | |
O2 | 0.34026 (11) | 1.0441 (6) | 1.34445 (16) | 0.0608 (8) | |
O1W | 0.46016 (12) | 0.2164 (7) | 0.62756 (17) | 0.0558 (8) | |
O3 | 0.29200 (12) | 0.6979 (5) | 1.32219 (16) | 0.0584 (8) | |
Cl1 | 0.40293 (4) | −0.28231 (18) | 0.68522 (7) | 0.0628 (3) | |
H1WA | 0.4422 (19) | 0.087 (7) | 0.654 (3) | 0.11 (2)* | |
H1WB | 0.4403 (18) | 0.347 (6) | 0.633 (3) | 0.10 (2)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.039 (2) | 0.050 (2) | 0.051 (3) | −0.0075 (19) | 0.001 (2) | −0.007 (2) |
C2 | 0.052 (3) | 0.058 (3) | 0.051 (3) | −0.013 (2) | −0.005 (2) | 0.001 (2) |
C3 | 0.055 (3) | 0.058 (3) | 0.052 (3) | −0.014 (2) | −0.015 (2) | 0.010 (2) |
C4 | 0.041 (2) | 0.039 (2) | 0.072 (3) | −0.0037 (18) | −0.011 (2) | 0.003 (2) |
C5 | 0.038 (2) | 0.042 (2) | 0.042 (2) | −0.0061 (18) | −0.0078 (19) | −0.0017 (19) |
C6 | 0.034 (2) | 0.040 (2) | 0.043 (2) | −0.0050 (17) | −0.0119 (18) | −0.0048 (18) |
C7 | 0.036 (2) | 0.040 (2) | 0.043 (2) | −0.0067 (18) | −0.0029 (18) | 0.0000 (18) |
C8 | 0.047 (2) | 0.049 (2) | 0.050 (3) | −0.009 (2) | −0.0036 (19) | 0.003 (2) |
C9 | 0.044 (2) | 0.040 (2) | 0.049 (2) | −0.0033 (18) | −0.0060 (19) | 0.0042 (19) |
C10 | 0.043 (2) | 0.041 (2) | 0.048 (2) | −0.0021 (18) | −0.0019 (19) | 0.0014 (19) |
C11 | 0.039 (2) | 0.050 (2) | 0.045 (2) | 0.0013 (18) | −0.0053 (18) | 0.0036 (19) |
C12 | 0.046 (3) | 0.048 (3) | 0.049 (3) | −0.0009 (19) | −0.001 (2) | 0.004 (2) |
C13 | 0.046 (2) | 0.044 (2) | 0.053 (2) | −0.0043 (19) | −0.006 (2) | 0.004 (2) |
C14 | 0.055 (2) | 0.043 (2) | 0.044 (2) | 0.0017 (18) | −0.004 (2) | −0.001 (2) |
C15 | 0.039 (2) | 0.040 (2) | 0.046 (2) | 0.0059 (18) | −0.0013 (19) | 0.004 (2) |
C16 | 0.035 (2) | 0.044 (2) | 0.049 (2) | 0.0078 (18) | −0.0055 (19) | −0.002 (2) |
C17 | 0.037 (2) | 0.049 (2) | 0.046 (2) | 0.0086 (19) | −0.002 (2) | −0.005 (2) |
C18 | 0.049 (3) | 0.075 (3) | 0.050 (3) | 0.008 (2) | 0.002 (2) | −0.004 (2) |
C19 | 0.056 (3) | 0.076 (3) | 0.055 (3) | 0.010 (3) | −0.009 (2) | −0.022 (3) |
C20 | 0.058 (3) | 0.052 (3) | 0.072 (3) | 0.007 (2) | −0.025 (2) | −0.010 (2) |
C21 | 0.042 (2) | 0.050 (3) | 0.066 (3) | 0.005 (2) | −0.015 (2) | 0.000 (2) |
N1 | 0.0339 (16) | 0.0401 (17) | 0.047 (2) | 0.0016 (14) | −0.0051 (16) | −0.0020 (16) |
N2 | 0.0368 (17) | 0.0398 (18) | 0.049 (2) | 0.0008 (15) | −0.0004 (15) | −0.0055 (15) |
N3 | 0.0347 (17) | 0.0455 (19) | 0.048 (2) | 0.0013 (15) | 0.0025 (15) | 0.0002 (17) |
N4 | 0.0441 (19) | 0.0424 (18) | 0.043 (2) | 0.0015 (15) | −0.0007 (16) | 0.0003 (15) |
N5 | 0.0362 (18) | 0.042 (2) | 0.062 (2) | 0.0067 (16) | −0.0008 (18) | 0.0029 (19) |
O1 | 0.105 (3) | 0.096 (3) | 0.056 (2) | −0.042 (2) | 0.014 (2) | −0.002 (2) |
O2 | 0.0548 (18) | 0.0584 (18) | 0.069 (2) | −0.0157 (15) | 0.0000 (16) | −0.0166 (17) |
O1W | 0.0483 (18) | 0.058 (2) | 0.061 (2) | −0.0063 (16) | 0.0040 (15) | −0.0109 (17) |
O3 | 0.0575 (18) | 0.0548 (18) | 0.0628 (19) | −0.0141 (15) | −0.0010 (16) | 0.0030 (15) |
Cl1 | 0.0477 (6) | 0.0446 (5) | 0.0960 (9) | 0.0035 (5) | −0.0071 (6) | 0.0021 (6) |
C1—C2 | 1.369 (5) | C13—C14 | 1.519 (5) |
C1—C6 | 1.385 (5) | C13—H13A | 0.9700 |
C1—H1 | 0.9300 | C13—H13B | 0.9700 |
C2—C3 | 1.391 (6) | C14—C15 | 1.477 (5) |
C2—H2 | 0.9300 | C14—H14A | 0.9700 |
C3—C4 | 1.372 (6) | C14—H14B | 0.9700 |
C3—H3 | 0.9300 | C15—N3 | 1.326 (5) |
C4—C5 | 1.393 (5) | C15—N4 | 1.326 (5) |
C4—H4 | 0.9300 | C16—C21 | 1.387 (5) |
C5—N2 | 1.393 (4) | C16—C17 | 1.389 (5) |
C5—C6 | 1.402 (5) | C16—N4 | 1.393 (5) |
C6—N1 | 1.397 (4) | C17—C18 | 1.388 (5) |
C7—N1 | 1.320 (5) | C17—N3 | 1.390 (5) |
C7—N2 | 1.341 (4) | C18—C19 | 1.374 (6) |
C7—C8 | 1.471 (5) | C18—H18 | 0.9300 |
C8—C9 | 1.520 (5) | C19—C20 | 1.398 (7) |
C8—H8A | 0.9700 | C19—H19 | 0.9300 |
C8—H8B | 0.9700 | C20—C21 | 1.387 (6) |
C9—C10 | 1.527 (5) | C20—H20 | 0.9300 |
C9—H9A | 0.9700 | C21—H21 | 0.9300 |
C9—H9B | 0.9700 | N1—H1A | 0.8600 |
C10—C11 | 1.516 (5) | N2—H2A | 0.8600 |
C10—H10A | 0.9700 | N3—H3A | 0.8600 |
C10—H10B | 0.9700 | N4—H4A | 0.8600 |
C11—C12 | 1.528 (5) | N5—O1 | 1.227 (4) |
C11—H11A | 0.9700 | N5—O2 | 1.248 (4) |
C11—H11B | 0.9700 | N5—O3 | 1.259 (4) |
C12—C13 | 1.514 (5) | O1W—H1WA | 0.927 (19) |
C12—H12A | 0.9700 | O1W—H1WB | 0.83 (2) |
C12—H12B | 0.9700 | ||
C2—C1—C6 | 117.2 (4) | H12A—C12—H12B | 107.5 |
C2—C1—H1 | 121.4 | C12—C13—C14 | 111.1 (3) |
C6—C1—H1 | 121.4 | C12—C13—H13A | 109.4 |
C1—C2—C3 | 121.1 (4) | C14—C13—H13A | 109.4 |
C1—C2—H2 | 119.4 | C12—C13—H13B | 109.4 |
C3—C2—H2 | 119.4 | C14—C13—H13B | 109.4 |
C4—C3—C2 | 122.9 (4) | H13A—C13—H13B | 108.0 |
C4—C3—H3 | 118.6 | C15—C14—C13 | 115.2 (3) |
C2—C3—H3 | 118.6 | C15—C14—H14A | 108.5 |
C3—C4—C5 | 116.3 (4) | C13—C14—H14A | 108.5 |
C3—C4—H4 | 121.9 | C15—C14—H14B | 108.5 |
C5—C4—H4 | 121.9 | C13—C14—H14B | 108.5 |
N2—C5—C4 | 133.0 (4) | H14A—C14—H14B | 107.5 |
N2—C5—C6 | 106.0 (3) | N3—C15—N4 | 109.5 (3) |
C4—C5—C6 | 121.0 (4) | N3—C15—C14 | 125.2 (4) |
C1—C6—N1 | 132.7 (4) | N4—C15—C14 | 125.4 (4) |
C1—C6—C5 | 121.5 (4) | C21—C16—C17 | 122.0 (4) |
N1—C6—C5 | 105.7 (3) | C21—C16—N4 | 131.6 (4) |
N1—C7—N2 | 108.8 (3) | C17—C16—N4 | 106.4 (3) |
N1—C7—C8 | 125.3 (4) | C18—C17—C16 | 121.2 (4) |
N2—C7—C8 | 125.9 (4) | C18—C17—N3 | 132.8 (4) |
C7—C8—C9 | 114.7 (3) | C16—C17—N3 | 106.0 (3) |
C7—C8—H8A | 108.6 | C19—C18—C17 | 117.1 (4) |
C9—C8—H8A | 108.6 | C19—C18—H18 | 121.5 |
C7—C8—H8B | 108.6 | C17—C18—H18 | 121.5 |
C9—C8—H8B | 108.6 | C18—C19—C20 | 121.9 (4) |
H8A—C8—H8B | 107.6 | C18—C19—H19 | 119.0 |
C8—C9—C10 | 110.8 (3) | C20—C19—H19 | 119.0 |
C8—C9—H9A | 109.5 | C21—C20—C19 | 121.2 (4) |
C10—C9—H9A | 109.5 | C21—C20—H20 | 119.4 |
C8—C9—H9B | 109.5 | C19—C20—H20 | 119.4 |
C10—C9—H9B | 109.5 | C20—C21—C16 | 116.6 (4) |
H9A—C9—H9B | 108.1 | C20—C21—H21 | 121.7 |
C11—C10—C9 | 114.6 (3) | C16—C21—H21 | 121.7 |
C11—C10—H10A | 108.6 | C7—N1—C6 | 110.0 (3) |
C9—C10—H10A | 108.6 | C7—N1—H1A | 125.0 |
C11—C10—H10B | 108.6 | C6—N1—H1A | 125.0 |
C9—C10—H10B | 108.6 | C7—N2—C5 | 109.4 (3) |
H10A—C10—H10B | 107.6 | C7—N2—H2A | 125.3 |
C10—C11—C12 | 112.0 (3) | C5—N2—H2A | 125.3 |
C10—C11—H11A | 109.2 | C15—N3—C17 | 109.3 (3) |
C12—C11—H11A | 109.2 | C15—N3—H3A | 125.3 |
C10—C11—H11B | 109.2 | C17—N3—H3A | 125.3 |
C12—C11—H11B | 109.2 | C15—N4—C16 | 108.9 (3) |
H11A—C11—H11B | 107.9 | C15—N4—H4A | 125.6 |
C13—C12—C11 | 114.9 (3) | C16—N4—H4A | 125.6 |
C13—C12—H12A | 108.5 | O1—N5—O2 | 121.9 (4) |
C11—C12—H12A | 108.5 | O1—N5—O3 | 118.9 (4) |
C13—C12—H12B | 108.5 | O2—N5—O3 | 119.2 (4) |
C11—C12—H12B | 108.5 | H1WA—O1W—H1WB | 104 (4) |
C6—C1—C2—C3 | 0.4 (5) | N4—C16—C17—N3 | −0.1 (4) |
C1—C2—C3—C4 | −0.8 (6) | C16—C17—C18—C19 | 1.0 (6) |
C2—C3—C4—C5 | 0.6 (6) | N3—C17—C18—C19 | −179.2 (4) |
C3—C4—C5—N2 | 178.3 (4) | C17—C18—C19—C20 | 0.1 (6) |
C3—C4—C5—C6 | −0.2 (5) | C18—C19—C20—C21 | −1.3 (7) |
C2—C1—C6—N1 | −178.1 (4) | C19—C20—C21—C16 | 1.4 (6) |
C2—C1—C6—C5 | 0.0 (5) | C17—C16—C21—C20 | −0.3 (5) |
N2—C5—C6—C1 | −179.0 (3) | N4—C16—C21—C20 | 178.8 (4) |
C4—C5—C6—C1 | −0.1 (5) | N2—C7—N1—C6 | 1.5 (4) |
N2—C5—C6—N1 | −0.4 (4) | C8—C7—N1—C6 | −177.9 (3) |
C4—C5—C6—N1 | 178.5 (3) | C1—C6—N1—C7 | 177.7 (4) |
N1—C7—C8—C9 | 104.1 (4) | C5—C6—N1—C7 | −0.7 (4) |
N2—C7—C8—C9 | −75.1 (5) | N1—C7—N2—C5 | −1.8 (4) |
C7—C8—C9—C10 | −175.5 (3) | C8—C7—N2—C5 | 177.6 (3) |
C8—C9—C10—C11 | −174.1 (3) | C4—C5—N2—C7 | −177.4 (4) |
C9—C10—C11—C12 | 179.3 (3) | C6—C5—N2—C7 | 1.3 (4) |
C10—C11—C12—C13 | −169.9 (3) | N4—C15—N3—C17 | −0.8 (4) |
C11—C12—C13—C14 | −173.5 (3) | C14—C15—N3—C17 | 177.8 (3) |
C12—C13—C14—C15 | −167.8 (3) | C18—C17—N3—C15 | −179.2 (4) |
C13—C14—C15—N3 | 130.3 (4) | C16—C17—N3—C15 | 0.5 (4) |
C13—C14—C15—N4 | −51.3 (5) | N3—C15—N4—C16 | 0.7 (4) |
C21—C16—C17—C18 | −0.9 (6) | C14—C15—N4—C16 | −177.9 (3) |
N4—C16—C17—C18 | 179.7 (3) | C21—C16—N4—C15 | −179.7 (4) |
C21—C16—C17—N3 | 179.3 (3) | C17—C16—N4—C15 | −0.4 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···Cl1 | 0.86 | 2.22 | 3.066 (3) | 168 |
N2—H2A···O3i | 0.86 | 1.94 | 2.778 (4) | 164 |
N2—H2A···O1i | 0.86 | 2.53 | 3.243 (4) | 141 |
N2—H2A···N5i | 0.86 | 2.59 | 3.436 (5) | 168 |
N3—H3A···O2ii | 0.86 | 1.95 | 2.807 (4) | 177 |
N4—H4A···O1Wiii | 0.86 | 1.87 | 2.730 (4) | 173 |
O1W—H1WA···Cl1 | 0.93 (2) | 2.19 (2) | 3.088 (4) | 163 (4) |
O1W—H1WB···Cl1iv | 0.83 (2) | 2.31 (3) | 3.099 (3) | 159 (5) |
C10—H10A···Cg(3)v | 0.97 | 3.36 | 4.148 (4) | 140 |
C11—H11B···Cg(4)vi | 0.97 | 3.21 | 4.047 (4) | 146 |
Symmetry codes: (i) −x+1/2, y, z−1/2; (ii) x, y−1, z; (iii) −x+1, −y+1, z+1/2; (iv) x, y+1, z; (v) −x+1/2, y, z+1/2; (vi) −x, −y+1, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C21H26N42+·Cl−·NO3−·H2O |
Mr | 449.93 |
Crystal system, space group | Orthorhombic, Pca21 |
Temperature (K) | 293 |
a, b, c (Å) | 24.462 (10), 5.102 (2), 18.210 (7) |
V (Å3) | 2272.5 (15) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.21 |
Crystal size (mm) | 0.31 × 0.22 × 0.18 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.939, 0.964 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 14275, 2086, 1619 |
Rint | 0.063 |
(sin θ/λ)max (Å−1) | 0.597 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.038, 0.084, 1.03 |
No. of reflections | 2086 |
No. of parameters | 288 |
No. of restraints | 5 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.19, −0.17 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···Cl1 | 0.86 | 2.22 | 3.066 (3) | 167.8 |
N2—H2A···O3i | 0.86 | 1.94 | 2.778 (4) | 163.7 |
N2—H2A···O1i | 0.86 | 2.53 | 3.243 (4) | 140.9 |
N2—H2A···N5i | 0.86 | 2.59 | 3.436 (5) | 168.3 |
N3—H3A···O2ii | 0.86 | 1.95 | 2.807 (4) | 177.3 |
N4—H4A···O1Wiii | 0.86 | 1.87 | 2.730 (4) | 173.0 |
O1W—H1WA···Cl1 | 0.927 (19) | 2.19 (2) | 3.088 (4) | 163 (4) |
O1W—H1WB···Cl1iv | 0.83 (2) | 2.31 (3) | 3.099 (3) | 159 (5) |
C10—H10A···Cg(3)v | 0.9700 | 3.3590 | 4.148 (4) | 139.92 |
C11—H11B···Cg(4)vi | 0.9700 | 3.2056 | 4.047 (4) | 146.08 |
Symmetry codes: (i) −x+1/2, y, z−1/2; (ii) x, y−1, z; (iii) −x+1, −y+1, z+1/2; (iv) x, y+1, z; (v) −x+1/2, y, z+1/2; (vi) −x, −y+1, z−1/2. |
Acknowledgements
We acknowledge the support of the National Natural Science Foundation of China (No. 20662003), the International Collaborative Project of the Ministry of Science and Technology (No. 2007400108) and the Foundation of the Governor of Guizhou Province, China.
References
Bruker (2005). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Day, A. I. & Arnold, A. P. (2000). Patent No. WO/2000/068232. Google Scholar
Day, A. I., Blanch, R. J., Arnold, A. P., Lorenzo, S., Lewis, G. R. & Dance, I. (2002). Angew. Chem. Int. Ed. Engl. 41, 275–277. Web of Science CSD CrossRef PubMed CAS Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838. CrossRef CAS IUCr Journals Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
Freeman, W. A., Mock, W. L. & Shih, N. Y. (1981). J. Am. Chem. Soc. 103, 7367–7370. CSD CrossRef CAS Web of Science Google Scholar
Kim, J., Jung, I. S., Kim, S.-Y., Lee, E., Kang, J.-K., Sakamoto, S., Yamaguchi, K. & Kim, K. (2000). J. Am. Chem. Soc. 122, 540–541. Web of Science CSD CrossRef CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Wang, L. L. Y. & Joullié, M. M. (1957). J. Am. Chem. Soc. 79, 5706–5708. CrossRef CAS Web of Science Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
This paper describes the preparation and structure of a new linear polyaromatic compound (I) in which the multiple functional groups can develop strong intermolecular interactions with cucurbit[n]urils (CB[n]) (Freeman et al.,1981; Day & Arnold, 2000; Day et al., 2002; Kim et al., 2000).
The molecular structure of (I), shown in Fig. 1, consists of one organic cation, one Cl- anion, one NO3- anion and one lattice water molecule. The two benzimidazole groups of the organic cation are not co-planar, but are oriented at a dihedral angle of 78.42 (6) ° with respect to each other. Molecules are linked via an N1—H1A···Cl1, N2—H2A···O3, N2—H2A···O1, N2—H2A···N5, N3—H3A···O2, N4—H4A···O1W and O1W—H1WA···Cl1 network of hydrogen bonds (Table 1) forming a three-dimensional framework. In addition, C—H···π interactions occur between adjacent organic cations (Table 1, Cg(3) and Cg(4) are the centroids of the C1—C6 and C16—C21 benzene rings, respectively).