organic compounds
3-(4-Bromophenyl)-3-(4-hydroxy-6-oxo-1,6-dihydropyrimidin-5-yl)-N-[(S)-1-phenylethyl]propanamide
aLianyungang Teachers' College, Lianyungang 222006, People's Republic of China, and bSchool of Chemistry and Chemical Engineering, Xuzhou Normal University, Xuzhou 221116, People's Republic of China
*Correspondence e-mail: laotu2001@263.net
In the molecule of the title compound, C21H20BrN3O3, the pyrimidine ring is oriented at dihedral angles of 80.87 (3) and 15.99 (3)°, respectively, to the pyrimidine and bromophenyl rings. The dihedral angle between the two benzene rings is 88.37 (3)°. In the intermolecular N—H⋯O and O—H⋯N hydrogen bonds link the molecules. A π–π contact between pyrimidine and phenyl rings [centroid–centroid distance = 3.776 (3) Å] may further stabilize the structure. The methine H and the methyl C and H atoms are disordered over two positions and were refined with occupancies of 0.522 (13) and 0.478 (13).
Related literature
For general background, see: Johar et al. (2005); Janeba et al. (2005); Soloducho et al. (2003); Mathews & Asokan (2007); Lagoja (2005); Michael (2005); Erian (1993). For bond-length data, see: Allen et al. (1987).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1998); cell SAINT (Bruker, 1998); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536809003821/hk2614sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809003821/hk2614Isup2.hkl
The title compound was prepared by the reaction of 4-bromophenylidene-Meldrum's acid (1 mmol) with 6-hydroxypyrimidin-4(3H)-one (1 mmol) and (S)-1-phenylethanamine (1 mmol) at 373 K in glacial acetic acid under microwave irradiation (maximum power 250 W, initial power 100 W) for 18 min (yield; 85%, m.p. 551–553 K). Crystals suitable for X-ray analysis were obtained from an ethanol solution by slow evaporation.
Atoms C21, H21A, H21B, H21C and H14 were disordered over two positions. During the
process the disordered atoms were refined with occupancies of 0.522 (13) and 0.478 (13). H atoms were positioned geometrically, with O-H = 0.82 Å (for OH), N-H = 0.86 Å (for NH) and C-H = 0.93, 0.98, 0.97 and 0.96 Å for aromatic, methine, methylene and methyl H, respectively, and constrained to ride on their parent atoms, with Uiso(H) = xUeq(C,N,O), where x = 1.5 for methyl and OH H and x = 1.2 for all other H atoms.Data collection: SMART (Bruker, 1998); cell
SAINT (Bruker, 1998); data reduction: SAINT (Bruker, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title molecule, with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. |
C21H20BrN3O3 | Z = 2 |
Mr = 442.31 | F(000) = 452 |
Triclinic, P1 | Dx = 1.463 Mg m−3 |
Hall symbol: -P 1 | Melting point = 551–553 K |
a = 7.147 (1) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 12.5010 (14) Å | Cell parameters from 1260 reflections |
c = 13.0940 (16) Å | θ = 3.1–25.2° |
α = 118.506 (2)° | µ = 2.07 mm−1 |
β = 99.047 (1)° | T = 298 K |
γ = 93.074 (1)° | Block, colorless |
V = 1004.0 (2) Å3 | 0.20 × 0.18 × 0.17 mm |
Bruker SMART CCD area-detector diffractometer | 3498 independent reflections |
Radiation source: fine-focus sealed tube | 1810 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.029 |
ϕ and ω scans | θmax = 25.0°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −8→8 |
Tmin = 0.682, Tmax = 0.719 | k = −14→14 |
5285 measured reflections | l = −15→12 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.062 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.162 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0673P)2] where P = (Fo2 + 2Fc2)/3 |
3498 reflections | (Δ/σ)max = 0.001 |
265 parameters | Δρmax = 0.38 e Å−3 |
0 restraints | Δρmin = −0.43 e Å−3 |
C21H20BrN3O3 | γ = 93.074 (1)° |
Mr = 442.31 | V = 1004.0 (2) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.147 (1) Å | Mo Kα radiation |
b = 12.5010 (14) Å | µ = 2.07 mm−1 |
c = 13.0940 (16) Å | T = 298 K |
α = 118.506 (2)° | 0.20 × 0.18 × 0.17 mm |
β = 99.047 (1)° |
Bruker SMART CCD area-detector diffractometer | 3498 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | 1810 reflections with I > 2σ(I) |
Tmin = 0.682, Tmax = 0.719 | Rint = 0.029 |
5285 measured reflections |
R[F2 > 2σ(F2)] = 0.062 | 0 restraints |
wR(F2) = 0.162 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.38 e Å−3 |
3498 reflections | Δρmin = −0.43 e Å−3 |
265 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Br1 | 0.19659 (12) | −0.19766 (6) | 0.27241 (8) | 0.1005 (4) | |
O1 | 0.5807 (5) | 0.4123 (3) | 0.5600 (3) | 0.0571 (10) | |
O2 | 0.3046 (5) | 0.4229 (4) | 0.8648 (3) | 0.0636 (11) | |
H2 | 0.3406 | 0.4455 | 0.9356 | 0.095* | |
O3 | 0.0791 (5) | 0.5971 (3) | 0.7386 (3) | 0.0556 (10) | |
N1 | 0.7505 (6) | 0.4888 (4) | 0.7474 (4) | 0.0428 (11) | |
H1 | 0.8512 | 0.5063 | 0.7267 | 0.051* | |
N2 | 0.6202 (6) | 0.4935 (4) | 0.9004 (4) | 0.0478 (11) | |
N3 | 0.3055 (6) | 0.6437 (4) | 0.6606 (4) | 0.0475 (11) | |
H3 | 0.3644 | 0.6160 | 0.6026 | 0.057* | |
C1 | 0.5815 (7) | 0.4342 (4) | 0.6618 (5) | 0.0408 (12) | |
C2 | 0.4203 (7) | 0.4109 (4) | 0.7041 (4) | 0.0394 (12) | |
C3 | 0.4498 (7) | 0.4424 (5) | 0.8225 (4) | 0.0417 (13) | |
C4 | 0.7634 (7) | 0.5149 (5) | 0.8586 (5) | 0.0450 (13) | |
H4 | 0.8816 | 0.5508 | 0.9104 | 0.054* | |
C5 | 0.1767 (7) | 0.5650 (5) | 0.6613 (4) | 0.0420 (13) | |
C6 | 0.1587 (8) | 0.4333 (4) | 0.5658 (4) | 0.0445 (13) | |
H6A | 0.2353 | 0.4275 | 0.5088 | 0.053* | |
H6B | 0.0262 | 0.4026 | 0.5241 | 0.053* | |
C7 | 0.2281 (7) | 0.3561 (4) | 0.6225 (4) | 0.0429 (13) | |
H7 | 0.1378 | 0.3585 | 0.6725 | 0.051* | |
C8 | 0.2223 (7) | 0.2209 (5) | 0.5337 (5) | 0.0457 (13) | |
C9 | 0.2544 (10) | 0.1396 (5) | 0.5734 (6) | 0.0734 (19) | |
H9 | 0.2786 | 0.1682 | 0.6548 | 0.088* | |
C10 | 0.2523 (11) | 0.0158 (6) | 0.4969 (7) | 0.084 (2) | |
H10 | 0.2783 | −0.0369 | 0.5271 | 0.101* | |
C11 | 0.2120 (9) | −0.0288 (5) | 0.3769 (6) | 0.0642 (17) | |
C12 | 0.1737 (11) | 0.0496 (6) | 0.3352 (6) | 0.088 (2) | |
H12 | 0.1444 | 0.0200 | 0.2537 | 0.105* | |
C13 | 0.1777 (11) | 0.1740 (5) | 0.4129 (5) | 0.079 (2) | |
H13 | 0.1496 | 0.2263 | 0.3826 | 0.094* | |
C14 | 0.3576 (10) | 0.7744 (6) | 0.7498 (6) | 0.0682 (17) | |
H14 | 0.2380 | 0.7946 | 0.7776 | 0.082* | 0.522 (13) |
H14' | 0.4428 | 0.8049 | 0.7146 | 0.082* | 0.478 (13) |
C15 | 0.4908 (10) | 0.7923 (5) | 0.8600 (6) | 0.0644 (17) | |
C16 | 0.4207 (11) | 0.7902 (7) | 0.9509 (7) | 0.085 (2) | |
H16 | 0.2890 | 0.7782 | 0.9449 | 0.102* | |
C17 | 0.5439 (14) | 0.8058 (7) | 1.0516 (7) | 0.099 (2) | |
H17 | 0.4949 | 0.8039 | 1.1125 | 0.119* | |
C18 | 0.7363 (16) | 0.8239 (7) | 1.0612 (8) | 0.105 (3) | |
H18 | 0.8182 | 0.8344 | 1.1289 | 0.126* | |
C19 | 0.8110 (12) | 0.8270 (7) | 0.9733 (10) | 0.108 (3) | |
H19 | 0.9430 | 0.8394 | 0.9804 | 0.129* | |
C20 | 0.6863 (11) | 0.8114 (7) | 0.8724 (8) | 0.090 (2) | |
H20 | 0.7365 | 0.8138 | 0.8121 | 0.108* | |
C21 | 0.3839 (18) | 0.8563 (10) | 0.6965 (11) | 0.072 (5) | 0.522 (13) |
H21A | 0.2689 | 0.8443 | 0.6410 | 0.108* | 0.522 (13) |
H21B | 0.4888 | 0.8360 | 0.6562 | 0.108* | 0.522 (13) |
H21C | 0.4108 | 0.9408 | 0.7585 | 0.108* | 0.522 (13) |
C21' | 0.211 (2) | 0.8496 (13) | 0.7670 (15) | 0.096 (7) | 0.478 (13) |
H21D | 0.1534 | 0.8433 | 0.6926 | 0.144* | 0.478 (13) |
H21E | 0.2647 | 0.9336 | 0.8230 | 0.144* | 0.478 (13) |
H21F | 0.1152 | 0.8226 | 0.7970 | 0.144* | 0.478 (13) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0949 (6) | 0.0471 (4) | 0.1247 (8) | 0.0142 (4) | 0.0106 (5) | 0.0183 (4) |
O1 | 0.064 (3) | 0.080 (3) | 0.037 (2) | 0.007 (2) | 0.0134 (19) | 0.035 (2) |
O2 | 0.045 (2) | 0.106 (3) | 0.037 (2) | −0.023 (2) | −0.0018 (18) | 0.040 (2) |
O3 | 0.046 (2) | 0.062 (2) | 0.052 (2) | −0.0011 (19) | 0.018 (2) | 0.020 (2) |
N1 | 0.036 (3) | 0.052 (3) | 0.040 (3) | 0.003 (2) | 0.008 (2) | 0.023 (2) |
N2 | 0.045 (3) | 0.060 (3) | 0.032 (3) | −0.008 (2) | −0.001 (2) | 0.021 (2) |
N3 | 0.051 (3) | 0.051 (3) | 0.039 (3) | 0.001 (2) | 0.014 (2) | 0.020 (2) |
C1 | 0.045 (3) | 0.045 (3) | 0.038 (3) | 0.006 (3) | 0.014 (3) | 0.023 (3) |
C2 | 0.045 (3) | 0.040 (3) | 0.034 (3) | −0.001 (2) | 0.004 (2) | 0.020 (3) |
C3 | 0.039 (3) | 0.052 (3) | 0.035 (3) | −0.004 (3) | 0.004 (3) | 0.024 (3) |
C4 | 0.036 (3) | 0.058 (3) | 0.039 (4) | 0.003 (3) | 0.002 (3) | 0.025 (3) |
C5 | 0.039 (3) | 0.049 (3) | 0.038 (3) | 0.006 (3) | 0.006 (3) | 0.023 (3) |
C6 | 0.050 (3) | 0.047 (3) | 0.034 (3) | 0.002 (3) | 0.001 (2) | 0.020 (3) |
C7 | 0.045 (3) | 0.043 (3) | 0.036 (3) | −0.001 (3) | 0.005 (3) | 0.018 (3) |
C8 | 0.047 (3) | 0.047 (3) | 0.041 (3) | −0.002 (3) | 0.003 (3) | 0.022 (3) |
C9 | 0.109 (6) | 0.056 (4) | 0.054 (4) | 0.007 (4) | 0.000 (4) | 0.031 (4) |
C10 | 0.110 (6) | 0.055 (4) | 0.081 (5) | 0.012 (4) | 0.002 (4) | 0.034 (4) |
C11 | 0.062 (4) | 0.048 (3) | 0.068 (5) | 0.004 (3) | 0.007 (3) | 0.020 (4) |
C12 | 0.130 (7) | 0.057 (4) | 0.059 (5) | 0.007 (4) | 0.000 (4) | 0.020 (4) |
C13 | 0.131 (6) | 0.048 (4) | 0.044 (4) | 0.008 (4) | −0.006 (4) | 0.020 (3) |
C14 | 0.079 (5) | 0.057 (4) | 0.063 (4) | −0.005 (4) | 0.005 (4) | 0.030 (4) |
C15 | 0.067 (5) | 0.049 (3) | 0.060 (4) | −0.004 (3) | 0.007 (4) | 0.017 (3) |
C16 | 0.076 (5) | 0.099 (6) | 0.063 (5) | −0.004 (4) | 0.009 (4) | 0.029 (4) |
C17 | 0.105 (7) | 0.100 (6) | 0.066 (6) | −0.007 (5) | 0.000 (5) | 0.028 (5) |
C18 | 0.107 (8) | 0.081 (5) | 0.082 (7) | 0.006 (5) | −0.016 (6) | 0.016 (5) |
C19 | 0.070 (6) | 0.098 (6) | 0.110 (8) | 0.006 (5) | −0.005 (6) | 0.024 (6) |
C20 | 0.070 (5) | 0.092 (5) | 0.091 (6) | 0.003 (4) | 0.018 (5) | 0.032 (5) |
C21 | 0.071 (9) | 0.059 (7) | 0.088 (10) | 0.001 (6) | 0.007 (7) | 0.042 (7) |
C21' | 0.094 (13) | 0.066 (9) | 0.104 (13) | 0.014 (9) | −0.007 (10) | 0.031 (9) |
Br1—C11 | 1.874 (6) | C10—H10 | 0.9300 |
O1—C1 | 1.225 (5) | C11—C12 | 1.352 (8) |
O2—C3 | 1.314 (5) | C12—C13 | 1.389 (8) |
O2—H2 | 0.8200 | C12—H12 | 0.9300 |
O3—C5 | 1.239 (5) | C13—H13 | 0.9300 |
N1—C4 | 1.318 (6) | C14—C21' | 1.418 (15) |
N1—C1 | 1.391 (6) | C14—C21 | 1.507 (12) |
N1—H1 | 0.8600 | C14—C15 | 1.508 (9) |
N2—C4 | 1.305 (6) | C14—H14 | 0.9800 |
N2—C3 | 1.355 (6) | C14—H14' | 0.9800 |
N3—C5 | 1.315 (6) | C15—C16 | 1.373 (9) |
N3—C14 | 1.467 (7) | C15—C20 | 1.375 (9) |
N3—H3 | 0.8600 | C16—C17 | 1.387 (10) |
C1—C2 | 1.428 (7) | C16—H16 | 0.9300 |
C2—C3 | 1.381 (6) | C17—C18 | 1.358 (11) |
C2—C7 | 1.495 (7) | C17—H17 | 0.9300 |
C4—H4 | 0.9300 | C18—C19 | 1.357 (11) |
C5—C6 | 1.500 (7) | C18—H18 | 0.9300 |
C6—C7 | 1.534 (6) | C19—C20 | 1.394 (11) |
C6—H6A | 0.9700 | C19—H19 | 0.9300 |
C6—H6B | 0.9700 | C20—H20 | 0.9300 |
C7—C8 | 1.520 (7) | C21—H14' | 0.8878 |
C7—H7 | 0.9800 | C21—H21A | 0.9600 |
C8—C9 | 1.360 (7) | C21—H21B | 0.9600 |
C8—C13 | 1.372 (8) | C21—H21C | 0.9600 |
C9—C10 | 1.382 (8) | C21'—H21D | 0.9600 |
C9—H9 | 0.9300 | C21'—H21E | 0.9600 |
C10—C11 | 1.366 (9) | C21'—H21F | 0.9600 |
C3—O2—H2 | 109.5 | C11—C12—C13 | 120.6 (6) |
C4—N1—C1 | 123.0 (4) | C11—C12—H12 | 119.7 |
C4—N1—H1 | 118.5 | C13—C12—H12 | 119.7 |
C1—N1—H1 | 118.5 | C8—C13—C12 | 121.2 (6) |
C4—N2—C3 | 116.3 (4) | C8—C13—H13 | 119.4 |
C5—N3—C14 | 125.9 (5) | C12—C13—H13 | 119.4 |
C5—N3—H3 | 117.1 | C21'—C14—N3 | 117.5 (8) |
C14—N3—H3 | 117.1 | C21'—C14—C21 | 69.8 (8) |
O1—C1—N1 | 119.3 (4) | N3—C14—C21 | 113.2 (7) |
O1—C1—C2 | 125.8 (5) | C21'—C14—C15 | 116.8 (9) |
N1—C1—C2 | 114.9 (5) | N3—C14—C15 | 111.5 (5) |
C3—C2—C1 | 117.2 (5) | C21—C14—C15 | 122.5 (7) |
C3—C2—C7 | 122.2 (4) | N3—C14—H14 | 102.1 |
C1—C2—C7 | 120.5 (4) | C21—C14—H14 | 102.1 |
O2—C3—N2 | 116.5 (4) | C15—C14—H14 | 102.1 |
O2—C3—C2 | 119.0 (5) | C21'—C14—H14' | 103.5 |
N2—C3—C2 | 124.6 (4) | N3—C14—H14' | 102.5 |
N2—C4—N1 | 124.0 (5) | C15—C14—H14' | 102.1 |
N2—C4—H4 | 118.0 | C16—C15—C20 | 118.0 (7) |
N1—C4—H4 | 118.0 | C16—C15—C14 | 121.0 (6) |
O3—C5—N3 | 121.8 (5) | C20—C15—C14 | 120.9 (7) |
O3—C5—C6 | 121.8 (5) | C15—C16—C17 | 120.8 (7) |
N3—C5—C6 | 116.3 (4) | C15—C16—H16 | 119.6 |
C5—C6—C7 | 109.1 (4) | C17—C16—H16 | 119.6 |
C5—C6—H6A | 109.9 | C18—C17—C16 | 119.9 (8) |
C7—C6—H6A | 109.9 | C18—C17—H17 | 120.0 |
C5—C6—H6B | 109.9 | C16—C17—H17 | 120.0 |
C7—C6—H6B | 109.9 | C19—C18—C17 | 121.0 (8) |
H6A—C6—H6B | 108.3 | C19—C18—H18 | 119.5 |
C2—C7—C8 | 111.5 (4) | C17—C18—H18 | 119.5 |
C2—C7—C6 | 112.3 (4) | C18—C19—C20 | 118.8 (8) |
C8—C7—C6 | 114.0 (4) | C18—C19—H19 | 120.6 |
C2—C7—H7 | 106.1 | C20—C19—H19 | 120.6 |
C8—C7—H7 | 106.1 | C15—C20—C19 | 121.5 (8) |
C6—C7—H7 | 106.1 | C15—C20—H20 | 119.2 |
C9—C8—C13 | 117.0 (5) | C19—C20—H20 | 119.2 |
C9—C8—C7 | 119.6 (5) | C14—C21—H21A | 109.5 |
C13—C8—C7 | 123.3 (5) | C14—C21—H21B | 109.5 |
C8—C9—C10 | 122.2 (6) | C14—C21—H21C | 109.5 |
C8—C9—H9 | 118.9 | H14'—C21—H21C | 114.6 |
C10—C9—H9 | 118.9 | C14—C21'—H21D | 109.5 |
C11—C10—C9 | 119.9 (6) | C14—C21'—H21E | 109.5 |
C11—C10—H10 | 120.1 | H21D—C21'—H21E | 109.5 |
C9—C10—H10 | 120.1 | C14—C21'—H21F | 109.5 |
C12—C11—C10 | 118.9 (6) | H21D—C21'—H21F | 109.5 |
C12—C11—Br1 | 120.8 (5) | H21E—C21'—H21F | 109.5 |
C10—C11—Br1 | 120.2 (5) | ||
C4—N1—C1—O1 | −179.8 (5) | C13—C8—C9—C10 | 3.2 (10) |
C4—N1—C1—C2 | 1.4 (7) | C7—C8—C9—C10 | −179.5 (6) |
O1—C1—C2—C3 | −179.8 (5) | C8—C9—C10—C11 | −1.8 (11) |
N1—C1—C2—C3 | −1.0 (6) | C9—C10—C11—C12 | −0.4 (11) |
O1—C1—C2—C7 | −0.6 (8) | C9—C10—C11—Br1 | −176.9 (5) |
N1—C1—C2—C7 | 178.1 (4) | C10—C11—C12—C13 | 0.9 (11) |
C4—N2—C3—O2 | −178.8 (5) | Br1—C11—C12—C13 | 177.4 (6) |
C4—N2—C3—C2 | 1.0 (8) | C9—C8—C13—C12 | −2.6 (10) |
C1—C2—C3—O2 | 179.6 (4) | C7—C8—C13—C12 | −179.8 (6) |
C7—C2—C3—O2 | 0.5 (7) | C11—C12—C13—C8 | 0.7 (12) |
C1—C2—C3—N2 | −0.1 (8) | C5—N3—C14—C21' | −59.8 (11) |
C7—C2—C3—N2 | −179.3 (5) | C5—N3—C14—C21 | −138.3 (7) |
C3—N2—C4—N1 | −0.7 (8) | C5—N3—C14—C15 | 78.9 (7) |
C1—N1—C4—N2 | −0.5 (8) | C21'—C14—C15—C16 | 51.4 (11) |
C14—N3—C5—O3 | 2.8 (8) | N3—C14—C15—C16 | −87.7 (8) |
C14—N3—C5—C6 | −175.3 (5) | C21—C14—C15—C16 | 133.6 (8) |
O3—C5—C6—C7 | −65.8 (6) | C21'—C14—C15—C20 | −128.6 (10) |
N3—C5—C6—C7 | 112.3 (5) | N3—C14—C15—C20 | 92.4 (7) |
C3—C2—C7—C8 | −108.8 (5) | C21—C14—C15—C20 | −46.4 (10) |
C1—C2—C7—C8 | 72.1 (6) | C20—C15—C16—C17 | −0.5 (10) |
C3—C2—C7—C6 | 121.9 (5) | C14—C15—C16—C17 | 179.5 (6) |
C1—C2—C7—C6 | −57.2 (6) | C15—C16—C17—C18 | 0.3 (12) |
C5—C6—C7—C2 | −50.3 (6) | C16—C17—C18—C19 | 0.0 (13) |
C5—C6—C7—C8 | −178.3 (4) | C17—C18—C19—C20 | 0.1 (13) |
C2—C7—C8—C9 | 60.7 (7) | C16—C15—C20—C19 | 0.6 (11) |
C6—C7—C8—C9 | −170.9 (5) | C14—C15—C20—C19 | −179.5 (7) |
C2—C7—C8—C13 | −122.2 (6) | C18—C19—C20—C15 | −0.4 (12) |
C6—C7—C8—C13 | 6.2 (8) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O3i | 0.86 | 1.88 | 2.694 (3) | 158 |
O2—H2···N2ii | 0.82 | 1.87 | 2.681 (3) | 170 |
N3—H3···O1iii | 0.86 | 2.09 | 2.892 (3) | 155 |
Symmetry codes: (i) x+1, y, z; (ii) −x+1, −y+1, −z+2; (iii) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C21H20BrN3O3 |
Mr | 442.31 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 298 |
a, b, c (Å) | 7.147 (1), 12.5010 (14), 13.0940 (16) |
α, β, γ (°) | 118.506 (2), 99.047 (1), 93.074 (1) |
V (Å3) | 1004.0 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 2.07 |
Crystal size (mm) | 0.20 × 0.18 × 0.17 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 1998) |
Tmin, Tmax | 0.682, 0.719 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5285, 3498, 1810 |
Rint | 0.029 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.062, 0.162, 1.06 |
No. of reflections | 3498 |
No. of parameters | 265 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.38, −0.43 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O3i | 0.86 | 1.88 | 2.694 (3) | 158 |
O2—H2···N2ii | 0.82 | 1.87 | 2.681 (3) | 170 |
N3—H3···O1iii | 0.86 | 2.09 | 2.892 (3) | 155 |
Symmetry codes: (i) x+1, y, z; (ii) −x+1, −y+1, −z+2; (iii) −x+1, −y+1, −z+1. |
Acknowledgements
We thank the Natural Science Foundation of China (grant No. 20672090) and the Natural Science Foundation of Jiangsu Province (grant No. BK2006033) for support.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The pyrimidines and their derivatives as a class of extremely important heterocyclic compounds are used in a wide array of synthetic and industrial applications. Not only they are an integral part of the genetic materials, viz. DNA and RNA as nucleotides and nucleosides but also play critical roles especially in pharmaceutical fields (Johar et al., 2005; Janeba et al., 2005). Some pyrimidine derivatives can give stable and good quality nanomaterials having many important electrical and optical properties (Soloducho et al., 2003; Mathews & Asokan, 2007), and also used as functional materials (Lagoja, 2005; Michael, 2005; Erian, 1993). We report herein the crystal structure of the title compound.
In the molecule of the title compound (Fig 1), the bond lengths (Allen et al., 1987) and angles are within normal ranges. Rings A (N1/N2/C1-C4), B (C8-C13) and C (C15-C20) are, of course, planar, and they are oriented at dihedral angles of A/B = 80.87 (3)°, A/C = 15.99 (3)° and B/C = 88.37 (3)°.
In the crystal structure, intermolecular N—H···O and O—H···N hydrogen bonds (Table 1) link the molecules, in which they may be effective in the stabilization of the structure. The π-π contact between the pyrimidine and the phenyl rings, Cg1—Cg2 [where Cg1 and Cg2 are centroids of the rings A (N1/N2/C1-C4) and C (C15-C20), respectively] may further stabilize the structure, with centroid-centroid distance of 3.776 (3) Å.