organic compounds
(Z)-1,2:5,6-Di-O-isopropylidene-α-D-ribo-hexofuranos-3-ulose O-benzyloxime
aDepartment of Organic Chemistry, Arrhenius Laboratory, Stockholm University, SE-106 91 Stockholm, Sweden, and bDivision of Structural Chemistry, Arrhenius Laboratory, Stockholm University, SE-106 91 Stockholm, Sweden
*Correspondence e-mail: lerik@struc.su.se
The title compound, C19H25NO6, is a Z diastereomer in which the phenyl ring of the 3-benzyloxime substituent and the 5,6-O-isopropylidene acetal are both located on the Si-face of the C=N double bond. Intermolecular C—H⋯O interactions result in helical chains along the b axis of the monoclinic unit cell.
Related literature
For background to sugar-based oxime derivatives, see: Tronchet et al. (1979, 1981, 1989); Peri et al. (2004). For the synthesis, see: Plenkiewicz et al. (1974); Fernández-González & Alonso (2006). For ring puckering analysis, see: Cremer & Pople (1975). For C–H⋯O interactions, see: Gatti et al. (2002). For the synthesis of a reactant, see: Shing et al. (1996).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: EXPOSE in IPDS Software (Stoe & Cie, 1997); cell CELL in IPDS Software; data reduction: INTEGRATE in IPDS Software; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP (Siemens, 1990); software used to prepare material for publication: PLATON (Spek, 2009), XP and SHELXL97.
Supporting information
10.1107/S1600536809006333/ng2545sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809006333/ng2545Isup2.hkl
All substances were purchased from commercial suppliers and used without further purification. Pyridine was dried over molecular sieves 4 Å. 1,2:5,6-Di-O-isopropylidene-α-D-ribo-hexofuranos-3-ulose was obtained from 1,2:5,6-di-O-isopropylidene-α-D-glucose (Shing et al., 1996)
Melting points are given uncorrected and were determined with a Gallenkamp melting point apparatus. Mass spectra were measured on a Bruker Daltonics MicroTOF spectrometer. Optical rotations were determined using a Perkin-Elmer 241 polarimeter with a path length of 1 dm (Concentrations are given in g/100 ml.). 1H NMR, 13C NMR, 1H,1H COSY and 1H,13C HSQC experiments were carried out on a Bruker 400 MHz s pectrometer. Chemical shifts are referenced for 1H to CHCl3 at 7.26 p.p.m. and for 13C to CDCl3 at 77.03 p.p.m.. Multiplicities are quoted as singlet (s), doublet (d), doublet of doublets (dd), doublet of doublet of doublets (ddd) and multiplet (m). Coupling constants J are determined from zero-filled, resolution enhanced spectra.
(Z)-1,2:5,6-di-O-isopropylidene-α-D-ribo-hexofuranos-3- ulose O-benzyloxime (I): 1,2:5,6-Di-O-isopropylidene-α-D-ribo-hexofuranos-3-ulose (2.96 g, 11.5 mmol) was dissolved in pyridine (20 ml). After addition of O-benzylhydroxylamine hydrochloride (2.75 g, 17.2 mmol) the mixture was stirred at room temperature under nitrogen. After 26 h, TLC (CH2Cl2/ethyl acetate, 20:1) showed conversion of the starting material (Rf = 1/5) to a major product (Rf = 1/2). The mixture was concentrated in vacuo. The resulting white solid was dissolved in CH2Cl2/ethyl acetate. The organic phase was washed three times with water, dried over Na2SO4, filtered and concentrated in vacuo. Recrystallization from pentane/ethyl acetate (2:1) at 246 K gave (Z)-1,2:5,6-di-O-isopropylidene-α-D-ribo-hexofuranos-3- ulose O-benzyloxime (I) as colourless crystals. After filtration the product was dried in vacuo at 298 K. Yield: 3.10 g (74%). Single crystals suitable for X-ray determination were obtained after one week of gas diffusion of pentane into a solution of I (20 mg, 0.06 mmol) in ethyl acetate (0.5 ml). M.p. = 402–404 K (pentane/ethyl acetate). [α]D21 = +201 (c = 1.0 in CHCl3). 1H NMR (400 MHz, CDCl3, 298 K): 1.28, 1.33, 1.43 and 1.49 (4 s, 12H, H methyl), 3.77 (dd, 2J66' = 8.3 Hz, 3J65 = 7.2 Hz, 1H, H6), 3.84 (dd, 3J6'5 = 6.8 Hz, 1H, H6'), 4.36 (ddd, 3J54 = 2.6 Hz, 1H, H5), 4.84 (dd, 4J42 = 1.3 Hz, 1H, H4), 5.16 (dd, 1H, H2), 5.20 (2H, H10 and H10'), 5.95 (d, 3J12 = 4.4 Hz, 1H, H1), 7.29–7.36 (m, 5H, H Ph) p.p.m.. 13C NMR (100 MHz, CDCl3, 298 K): 25.5, 26.0, 27.3 and 27.4 (4 × q, C8, C9, C18 and C19), 64.2 (t, C6), 74.8 (d, C2), 76.9 (× 2) and 77.0 (2 × d and 1 × t, C4, C5 and C10), 104.8 (d, C1), 109.8 and 113.7 (2 × s, C7 and C17), 128.0, 128.2, 128.4, 137.6 and 157.0 (2 × s and 5 × d, C3 and C Ph) p.p.m.. ESI-HRMS: m/z calculated for C19H25NO6 (MNa+) 386.1574, found 386.1579. C19H25NO6 (363.40 g mol-1): calculated C 62.80, H 6.93, N 3.85%; found C 63.08, H 7.45, N 3.89%.
H atoms were positioned geometrically and constrained to ride on the parent atom. The C—H bond distances are 0.98 Å for CH3, 0.99 Å for CH2 and 1.00 Å for CH. The Uiso(H) values were set at 1.5Ueq(C,O) for the CH3 groups and 1.2Ueq(C) for all other H atoms. The value of the
was not meaningful owing to the absence of significant anomalous scatterers, thus the data mere merged using MERG 4 in SHELXL. The was assigned by reference to the chiral starting material.Data collection: EXPOSE in IPDS Software (Stoe & Cie, 1997); cell
CELL in IPDS Software (Stoe & Cie, 1997); data reduction: INTEGRATE in IPDS Software (Stoe & Cie, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP (Siemens, 1990); software used to prepare material for publication: PLATON (Spek, 2009), XP (Siemens, 1990) and SHELXL97 (Sheldrick, 2008).C19H25NO6 | F(000) = 388 |
Mr = 363.40 | Dx = 1.249 Mg m−3 |
Monoclinic, P21 | Melting point: 403(1) K |
Hall symbol: P 2yb | Mo Kα radiation, λ = 0.71073 Å |
a = 11.8012 (12) Å | Cell parameters from 1353 reflections |
b = 6.0019 (5) Å | θ = 1.9–28.2° |
c = 13.7021 (11) Å | µ = 0.09 mm−1 |
β = 95.122 (11)° | T = 293 K |
V = 966.64 (15) Å3 | Prism, colourless |
Z = 2 | 0.30 × 0.05 × 0.04 mm |
Stoe IPDS diffractometer | 2023 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.104 |
Graphite monochromator | θmax = 28.2°, θmin = 3.0° |
Detector resolution: 6.0 pixels mm-1 | h = −15→15 |
ϕ scans | k = −7→7 |
9449 measured reflections | l = −18→17 |
2558 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.052 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.131 | H-atom parameters constrained |
S = 0.99 | w = 1/[σ2(Fo2) + (0.0808P)2] where P = (Fo2 + 2Fc2)/3 |
2558 reflections | (Δ/σ)max < 0.001 |
235 parameters | Δρmax = 0.31 e Å−3 |
1 restraint | Δρmin = −0.29 e Å−3 |
C19H25NO6 | V = 966.64 (15) Å3 |
Mr = 363.40 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 11.8012 (12) Å | µ = 0.09 mm−1 |
b = 6.0019 (5) Å | T = 293 K |
c = 13.7021 (11) Å | 0.30 × 0.05 × 0.04 mm |
β = 95.122 (11)° |
Stoe IPDS diffractometer | 2023 reflections with I > 2σ(I) |
9449 measured reflections | Rint = 0.104 |
2558 independent reflections |
R[F2 > 2σ(F2)] = 0.052 | 1 restraint |
wR(F2) = 0.131 | H-atom parameters constrained |
S = 0.99 | Δρmax = 0.31 e Å−3 |
2558 reflections | Δρmin = −0.29 e Å−3 |
235 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ (F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | −0.06053 (17) | 0.2232 (4) | 0.27810 (14) | 0.0389 (4) | |
O1 | 0.02900 (13) | 0.5554 (3) | 0.09073 (11) | 0.0389 (4) | |
O2 | 0.11981 (15) | 0.8375 (3) | 0.18283 (13) | 0.0445 (4) | |
O3 | 0.07981 (16) | 0.6561 (4) | 0.32044 (12) | 0.0510 (5) | |
O4 | −0.06093 (18) | 0.2884 (3) | 0.37689 (13) | 0.0477 (4) | |
O5 | −0.21517 (14) | 0.5609 (3) | 0.09506 (14) | 0.0469 (4) | |
O6 | −0.34050 (19) | 0.2785 (5) | 0.0706 (3) | 0.1008 (12) | |
C1 | 0.01554 (19) | 0.7319 (4) | 0.15833 (17) | 0.0371 (5) | |
H1 | −0.0423 | 0.8385 | 0.1321 | 0.044* | |
C2 | −0.01695 (19) | 0.6276 (4) | 0.25278 (17) | 0.0363 (5) | |
H2 | −0.0841 | 0.7001 | 0.2758 | 0.044* | |
C3 | −0.04108 (17) | 0.3891 (4) | 0.22521 (16) | 0.0325 (4) | |
C4 | −0.03742 (18) | 0.3679 (4) | 0.11580 (16) | 0.0334 (4) | |
H4 | 0.0012 | 0.2294 | 0.1004 | 0.040* | |
C5 | −0.15390 (19) | 0.3778 (4) | 0.05929 (18) | 0.0384 (5) | |
H5 | −0.1455 | 0.3985 | −0.0106 | 0.046* | |
C6 | −0.2320 (2) | 0.1834 (5) | 0.0731 (3) | 0.0554 (7) | |
H6A | −0.2283 | 0.0754 | 0.0208 | 0.067* | |
H6B | −0.2119 | 0.1103 | 0.1354 | 0.067* | |
C7 | 0.1722 (2) | 0.7382 (5) | 0.27004 (19) | 0.0457 (6) | |
C8 | 0.2295 (3) | 0.9206 (6) | 0.3320 (3) | 0.0664 (9) | |
H8A | 0.2656 | 0.8576 | 0.3913 | 0.100* | |
H8B | 0.1738 | 1.0280 | 0.3479 | 0.100* | |
H8C | 0.2857 | 0.9922 | 0.2963 | 0.100* | |
C9 | 0.2493 (3) | 0.5495 (8) | 0.2465 (3) | 0.0773 (10) | |
H9A | 0.2837 | 0.4860 | 0.3063 | 0.116* | |
H9B | 0.3076 | 0.6048 | 0.2084 | 0.116* | |
H9C | 0.2058 | 0.4375 | 0.2099 | 0.116* | |
C10 | −0.0865 (2) | 0.0973 (5) | 0.43327 (18) | 0.0494 (6) | |
H10A | −0.0655 | 0.1285 | 0.5020 | 0.059* | |
H10B | −0.0403 | −0.0266 | 0.4146 | 0.059* | |
C11 | −0.2096 (2) | 0.0296 (5) | 0.42074 (18) | 0.0452 (6) | |
C12 | −0.2392 (3) | −0.1738 (7) | 0.4566 (4) | 0.0787 (12) | |
H12 | −0.1830 | −0.2674 | 0.4856 | 0.094* | |
C13 | −0.3520 (3) | −0.2411 (8) | 0.4502 (4) | 0.0966 (15) | |
H13 | −0.3711 | −0.3789 | 0.4751 | 0.116* | |
C14 | −0.4337 (3) | −0.1078 (10) | 0.4081 (4) | 0.0921 (14) | |
H14 | −0.5095 | −0.1515 | 0.4058 | 0.111* | |
C15 | −0.4060 (3) | 0.0900 (11) | 0.3690 (5) | 0.114 (2) | |
H15 | −0.4623 | 0.1795 | 0.3376 | 0.137* | |
C16 | −0.2925 (3) | 0.1590 (7) | 0.3761 (3) | 0.0835 (12) | |
H16 | −0.2738 | 0.2956 | 0.3498 | 0.100* | |
C17 | −0.3326 (2) | 0.5127 (6) | 0.0709 (3) | 0.0613 (8) | |
C18 | −0.3984 (3) | 0.6133 (11) | 0.1487 (4) | 0.1084 (18) | |
H18A | −0.3931 | 0.7728 | 0.1458 | 0.163* | |
H18B | −0.3674 | 0.5623 | 0.2119 | 0.163* | |
H18C | −0.4767 | 0.5693 | 0.1380 | 0.163* | |
C19 | −0.3701 (3) | 0.5986 (8) | −0.0303 (3) | 0.0872 (12) | |
H19A | −0.3649 | 0.7582 | −0.0307 | 0.131* | |
H19B | −0.4473 | 0.5545 | −0.0481 | 0.131* | |
H19C | −0.3218 | 0.5378 | −0.0765 | 0.131* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0444 (10) | 0.0412 (10) | 0.0313 (9) | −0.0039 (8) | 0.0040 (8) | −0.0003 (8) |
O1 | 0.0417 (8) | 0.0452 (9) | 0.0306 (7) | −0.0071 (7) | 0.0083 (6) | 0.0006 (7) |
O2 | 0.0443 (9) | 0.0466 (10) | 0.0421 (9) | −0.0176 (7) | 0.0019 (7) | 0.0041 (8) |
O3 | 0.0495 (9) | 0.0706 (12) | 0.0317 (8) | −0.0259 (9) | −0.0027 (7) | 0.0008 (8) |
O4 | 0.0652 (11) | 0.0476 (9) | 0.0312 (8) | −0.0141 (8) | 0.0090 (8) | −0.0014 (7) |
O5 | 0.0343 (8) | 0.0513 (10) | 0.0536 (10) | 0.0019 (8) | −0.0047 (7) | −0.0090 (9) |
O6 | 0.0367 (10) | 0.0663 (15) | 0.199 (4) | −0.0063 (11) | 0.0061 (15) | 0.0190 (19) |
C1 | 0.0360 (10) | 0.0364 (10) | 0.0383 (12) | −0.0056 (9) | 0.0007 (9) | 0.0028 (10) |
C2 | 0.0349 (10) | 0.0418 (11) | 0.0323 (11) | −0.0041 (9) | 0.0042 (8) | −0.0050 (9) |
C3 | 0.0275 (9) | 0.0375 (10) | 0.0324 (11) | 0.0007 (8) | 0.0023 (8) | −0.0014 (9) |
C4 | 0.0361 (10) | 0.0327 (10) | 0.0317 (10) | −0.0012 (8) | 0.0050 (8) | −0.0017 (9) |
C5 | 0.0398 (11) | 0.0413 (11) | 0.0335 (11) | −0.0010 (10) | −0.0002 (9) | −0.0070 (10) |
C6 | 0.0411 (12) | 0.0512 (15) | 0.0721 (19) | −0.0080 (12) | −0.0050 (13) | −0.0109 (14) |
C7 | 0.0400 (12) | 0.0549 (14) | 0.0416 (13) | −0.0101 (11) | 0.0001 (10) | 0.0039 (12) |
C8 | 0.0580 (16) | 0.077 (2) | 0.0614 (19) | −0.0270 (16) | −0.0088 (15) | −0.0039 (16) |
C9 | 0.0561 (17) | 0.089 (3) | 0.086 (2) | 0.0134 (19) | −0.0004 (17) | 0.001 (2) |
C10 | 0.0557 (14) | 0.0593 (16) | 0.0330 (12) | −0.0121 (13) | 0.0026 (10) | 0.0076 (12) |
C11 | 0.0511 (13) | 0.0508 (14) | 0.0350 (11) | −0.0015 (11) | 0.0108 (10) | 0.0022 (11) |
C12 | 0.0552 (17) | 0.073 (2) | 0.108 (3) | −0.0078 (16) | 0.0104 (18) | 0.038 (2) |
C13 | 0.061 (2) | 0.089 (3) | 0.141 (4) | −0.019 (2) | 0.015 (2) | 0.039 (3) |
C14 | 0.0490 (17) | 0.114 (3) | 0.115 (4) | −0.004 (2) | 0.016 (2) | 0.008 (3) |
C15 | 0.0470 (18) | 0.126 (4) | 0.169 (5) | 0.019 (2) | 0.009 (2) | 0.051 (4) |
C16 | 0.0572 (18) | 0.075 (2) | 0.119 (3) | 0.0096 (17) | 0.017 (2) | 0.036 (2) |
C17 | 0.0320 (11) | 0.0644 (18) | 0.086 (2) | 0.0029 (12) | −0.0023 (12) | 0.0015 (17) |
C18 | 0.060 (2) | 0.151 (5) | 0.118 (4) | 0.038 (3) | 0.028 (2) | 0.013 (4) |
C19 | 0.0623 (18) | 0.092 (3) | 0.100 (3) | 0.007 (2) | −0.0366 (19) | 0.001 (2) |
N1—C3 | 1.265 (3) | C8—H8B | 0.9600 |
N1—O4 | 1.410 (3) | C8—H8C | 0.9600 |
O1—C1 | 1.425 (3) | C9—H9A | 0.9600 |
O1—C4 | 1.431 (3) | C9—H9B | 0.9600 |
O2—C1 | 1.398 (3) | C9—H9C | 0.9600 |
O2—C7 | 1.426 (3) | C10—C11 | 1.504 (4) |
O3—C2 | 1.416 (3) | C10—H10A | 0.9700 |
O3—C7 | 1.429 (3) | C10—H10B | 0.9700 |
O4—C10 | 1.430 (3) | C11—C16 | 1.352 (4) |
O5—C17 | 1.426 (3) | C11—C12 | 1.373 (5) |
O5—C5 | 1.426 (3) | C12—C13 | 1.386 (5) |
O6—C6 | 1.400 (4) | C12—H12 | 0.9300 |
O6—C17 | 1.409 (4) | C13—C14 | 1.343 (7) |
C1—C2 | 1.518 (3) | C13—H13 | 0.9300 |
C1—H1 | 0.9800 | C14—C15 | 1.354 (7) |
C2—C3 | 1.501 (3) | C14—H14 | 0.9300 |
C2—H2 | 0.9800 | C15—C16 | 1.397 (6) |
C3—C4 | 1.509 (3) | C15—H15 | 0.9300 |
C4—C5 | 1.517 (3) | C16—H16 | 0.9300 |
C4—H4 | 0.9800 | C17—C18 | 1.501 (6) |
C5—C6 | 1.509 (4) | C17—C19 | 1.508 (5) |
C5—H5 | 0.9800 | C18—H18A | 0.9600 |
C6—H6A | 0.9700 | C18—H18B | 0.9600 |
C6—H6B | 0.9700 | C18—H18C | 0.9600 |
C7—C9 | 1.506 (5) | C19—H19A | 0.9600 |
C7—C8 | 1.508 (4) | C19—H19B | 0.9600 |
C8—H8A | 0.9600 | C19—H19C | 0.9600 |
C3—N1—O4 | 110.36 (19) | H8A—C8—H8C | 109.5 |
C1—O1—C4 | 109.48 (16) | H8B—C8—H8C | 109.5 |
C1—O2—C7 | 108.55 (18) | C7—C9—H9A | 109.5 |
C2—O3—C7 | 109.31 (17) | C7—C9—H9B | 109.5 |
N1—O4—C10 | 108.36 (18) | H9A—C9—H9B | 109.5 |
C17—O5—C5 | 106.0 (2) | C7—C9—H9C | 109.5 |
C6—O6—C17 | 110.3 (2) | H9A—C9—H9C | 109.5 |
O2—C1—O1 | 110.25 (18) | H9B—C9—H9C | 109.5 |
O2—C1—C2 | 105.44 (18) | O4—C10—C11 | 113.8 (2) |
O1—C1—C2 | 107.37 (19) | O4—C10—H10A | 108.8 |
O2—C1—H1 | 111.2 | C11—C10—H10A | 108.8 |
O1—C1—H1 | 111.2 | O4—C10—H10B | 108.8 |
C2—C1—H1 | 111.2 | C11—C10—H10B | 108.8 |
O3—C2—C3 | 113.8 (2) | H10A—C10—H10B | 107.7 |
O3—C2—C1 | 104.96 (18) | C16—C11—C12 | 118.4 (3) |
C3—C2—C1 | 103.64 (19) | C16—C11—C10 | 123.3 (3) |
O3—C2—H2 | 111.3 | C12—C11—C10 | 118.3 (3) |
C3—C2—H2 | 111.3 | C11—C12—C13 | 120.6 (4) |
C1—C2—H2 | 111.3 | C11—C12—H12 | 119.7 |
N1—C3—C2 | 130.3 (2) | C13—C12—H12 | 119.7 |
N1—C3—C4 | 121.7 (2) | C14—C13—C12 | 120.2 (4) |
C2—C3—C4 | 107.98 (19) | C14—C13—H13 | 119.9 |
O1—C4—C3 | 103.72 (17) | C12—C13—H13 | 119.9 |
O1—C4—C5 | 109.72 (18) | C13—C14—C15 | 120.2 (4) |
C3—C4—C5 | 113.50 (18) | C13—C14—H14 | 119.9 |
O1—C4—H4 | 109.9 | C15—C14—H14 | 119.9 |
C3—C4—H4 | 109.9 | C14—C15—C16 | 119.8 (4) |
C5—C4—H4 | 109.9 | C14—C15—H15 | 120.1 |
O5—C5—C6 | 102.63 (19) | C16—C15—H15 | 120.1 |
O5—C5—C4 | 108.59 (18) | C11—C16—C15 | 120.8 (4) |
C6—C5—C4 | 116.2 (2) | C11—C16—H16 | 119.6 |
O5—C5—H5 | 109.7 | C15—C16—H16 | 119.6 |
C6—C5—H5 | 109.7 | O6—C17—O5 | 105.4 (2) |
C4—C5—H5 | 109.7 | O6—C17—C18 | 111.4 (4) |
O6—C6—C5 | 104.4 (2) | O5—C17—C18 | 107.9 (3) |
O6—C6—H6A | 110.9 | O6—C17—C19 | 109.0 (4) |
C5—C6—H6A | 110.9 | O5—C17—C19 | 110.1 (3) |
O6—C6—H6B | 110.9 | C18—C17—C19 | 112.8 (3) |
C5—C6—H6B | 110.9 | C17—C18—H18A | 109.5 |
H6A—C6—H6B | 108.9 | C17—C18—H18B | 109.5 |
O2—C7—O3 | 104.90 (19) | H18A—C18—H18B | 109.5 |
O2—C7—C9 | 111.1 (3) | C17—C18—H18C | 109.5 |
O3—C7—C9 | 110.2 (3) | H18A—C18—H18C | 109.5 |
O2—C7—C8 | 107.9 (2) | H18B—C18—H18C | 109.5 |
O3—C7—C8 | 107.6 (2) | C17—C19—H19A | 109.5 |
C9—C7—C8 | 114.6 (3) | C17—C19—H19B | 109.5 |
C7—C8—H8A | 109.5 | H19A—C19—H19B | 109.5 |
C7—C8—H8B | 109.5 | C17—C19—H19C | 109.5 |
H8A—C8—H8B | 109.5 | H19A—C19—H19C | 109.5 |
C7—C8—H8C | 109.5 | H19B—C19—H19C | 109.5 |
C3—N1—O4—C10 | 178.3 (2) | C3—C4—C5—C6 | −68.1 (3) |
C7—O2—C1—O1 | −93.8 (2) | C17—O6—C6—C5 | −8.4 (4) |
C7—O2—C1—C2 | 21.8 (3) | O5—C5—C6—O6 | 25.7 (3) |
C4—O1—C1—O2 | 139.51 (18) | C4—C5—C6—O6 | 144.0 (3) |
C4—O1—C1—C2 | 25.1 (2) | C1—O2—C7—O3 | −27.2 (3) |
C7—O3—C2—C3 | 104.1 (2) | C1—O2—C7—C9 | 91.9 (3) |
C7—O3—C2—C1 | −8.6 (3) | C1—O2—C7—C8 | −141.6 (2) |
O2—C1—C2—O3 | −8.0 (3) | C2—O3—C7—O2 | 21.7 (3) |
O1—C1—C2—O3 | 109.5 (2) | C2—O3—C7—C9 | −98.0 (3) |
O2—C1—C2—C3 | −127.70 (19) | C2—O3—C7—C8 | 136.4 (2) |
O1—C1—C2—C3 | −10.1 (2) | N1—O4—C10—C11 | −74.9 (3) |
O4—N1—C3—C2 | 1.8 (3) | O4—C10—C11—C16 | −12.1 (4) |
O4—N1—C3—C4 | −179.14 (19) | O4—C10—C11—C12 | 168.0 (3) |
O3—C2—C3—N1 | 58.5 (3) | C16—C11—C12—C13 | −2.2 (7) |
C1—C2—C3—N1 | 172.0 (2) | C10—C11—C12—C13 | 177.7 (4) |
O3—C2—C3—C4 | −120.6 (2) | C11—C12—C13—C14 | 0.4 (8) |
C1—C2—C3—C4 | −7.2 (2) | C12—C13—C14—C15 | 2.0 (9) |
C1—O1—C4—C3 | −28.9 (2) | C13—C14—C15—C16 | −2.5 (9) |
C1—O1—C4—C5 | 92.7 (2) | C12—C11—C16—C15 | 1.7 (7) |
N1—C3—C4—O1 | −157.54 (19) | C10—C11—C16—C15 | −178.2 (5) |
C2—C3—C4—O1 | 21.7 (2) | C14—C15—C16—C11 | 0.6 (9) |
N1—C3—C4—C5 | 83.5 (3) | C6—O6—C17—O5 | −12.4 (5) |
C2—C3—C4—C5 | −97.3 (2) | C6—O6—C17—C18 | −129.1 (4) |
C17—O5—C5—C6 | −33.8 (3) | C6—O6—C17—C19 | 105.8 (4) |
C17—O5—C5—C4 | −157.3 (2) | C5—O5—C17—O6 | 29.4 (4) |
O1—C4—C5—O5 | −68.6 (2) | C5—O5—C17—C18 | 148.5 (3) |
C3—C4—C5—O5 | 46.9 (3) | C5—O5—C17—C19 | −88.0 (3) |
O1—C4—C5—C6 | 176.4 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···O2i | 0.98 | 2.43 | 3.386 (3) | 164 |
C10—H10A···O3ii | 0.97 | 2.46 | 3.387 (3) | 160 |
Symmetry codes: (i) −x, y−1/2, −z; (ii) −x, y−1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C19H25NO6 |
Mr | 363.40 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 293 |
a, b, c (Å) | 11.8012 (12), 6.0019 (5), 13.7021 (11) |
β (°) | 95.122 (11) |
V (Å3) | 966.64 (15) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.30 × 0.05 × 0.04 |
Data collection | |
Diffractometer | Stoe IPDS diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9449, 2558, 2023 |
Rint | 0.104 |
(sin θ/λ)max (Å−1) | 0.665 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.052, 0.131, 0.99 |
No. of reflections | 2558 |
No. of parameters | 235 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.31, −0.29 |
Computer programs: EXPOSE in IPDS Software (Stoe & Cie, 1997), CELL in IPDS Software (Stoe & Cie, 1997), INTEGRATE in IPDS Software (Stoe & Cie, 1997), SHELXS97 (Sheldrick, 2008), PLATON (Spek, 2009), XP (Siemens, 1990) and SHELXL97 (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···O2i | 0.98 | 2.43 | 3.386 (3) | 164 |
C10—H10A···O3ii | 0.97 | 2.46 | 3.387 (3) | 160 |
Symmetry codes: (i) −x, y−1/2, −z; (ii) −x, y−1/2, −z+1. |
Acknowledgements
This work was supported by the Carl Trygger Foundation and the Swedish Research Council (VR).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Oxime derivatives of carbohydrates are important precursors for preparation of monosaccharide building blocks in disaccharide mimic synthesis. (Tronchet et al., 1979, 1981,1989; Peri et al., 2004)
The title compound (I) can be easily synthesized by condensation of the corresponding keto sugar with O-benzylhydroxylamine hydrochloride in pyridine in good yield. (Plenkiewicz et al., 1974; Fernández-González & Alonso, 2006) Crystallization from pentane/ethyl acetate gave exclusively the Z diastereomer of I. The crystal structure of I is depicted in Fig. 1 and reveals a twist form for the sugar furanose ring (O1, C1, C2, C3, C4) according to the puckering parameters q2 = 0.257 (2) Å and Φ2 = 164.8 (5)°. (Cremer & Pople, 1975) This conformation is also observed for the 1,2-O-isopropylidene (O2, C1, C2, O3, C7; q2 = 0.237 (2) Å, Φ2 = 162.1 (6)°) and the 5,6-O-isopropylidene acetal (O5, C5, C6, O6, C17; q2 = 0.310 (3) Å, Φ2 = 15.4 (6)°). The phenyl ring of the 3-benzyloxime substituent at C3 and the furanose mean plane (O1, C1 to C4) are twisted to each other by 87.2 (2)° indicated by an N1—O4—C10—C11 torsion angle of -74.9 (3)°. The Re-face of the C=N double bond is shielded by a methyl group of the 1,2-O-isopropylidene entity, while the Si-face is shielded by the benzyl group of the 3-benzyloxime substituent and the 5,6-O-isopropylidene protecting group. Assuming that the latter two groups are able to rotate in solution and the 1,2-acetonide is rigid, a nucleophilic attack from the Si-face should be preferred.
The donor-acceptor distance between O3 and the benzylic carbon is 3.387 (3) Å and is therefore in the range of C—H···O hydrogen bonds. (Gatti et al., 2002) Furthermore, H5 is hydrogen bonded to O2 of an adjacent molecule with a donor-acceptor distance of 3.386 (3) Å. These weak intermolecular interactions lead to chains of molecules of I featuring a twofold screw symmetry along the crystallographic b axis (see Fig. 2).