organic compounds
N-(1-Naphthyl)-10H-9-oxa-1,3-diazaanthracen-4-amine
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bCrystal Materials Research Unit, Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat-Yai, Songkhla 90112, Thailand, cSyngene International Ltd, Biocon Park, Plot Nos. 2 and 3, Bommasandra 4th Phase, Jigani Link Road, Bangalore 560 100, India, dDepartment of Printing, Manipal Institute of Technology, Manipal 576 104, India, and eDepartment of Chemistry, National Institute of Technology-Karnataka, Surathkal, Mangalore 575 025, India
*Correspondence e-mail: hkfun@usm.my
In the molecule of the title compound, C21H15N3O, the 10H-9-oxa-1,3-diazaanthracene ring system is slightly bent, with dihedral angles of 3.99 (6) and 4.80 (6)° between the pyran ring and the pyrimidine and benzene rings, respectively. This ring system makes a dihedral angle of 85.23 (3)° with the naphthalene plane. In the crystal packing, molecules are linked by N—H⋯N hydrogen bonds into chains along the a axis and these chains are stacked along the b axis. The crystal is further stabilized by weak C—H⋯N and C—H⋯π interactions.
Related literature
For values of bond lengths, see Allen et al. (1987). For background to the bioactivity and applications of naphthyrimidines, see, for example: Bedard et al. (2000); Bohme & Haake (1976); Erian (1993); Falardeau et al. (2000); Martinez & Marco (1997); Tandon et al. (1991); Taylor & McKillop (1970). For the stability of the temperature controller, see Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell APEX2; data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003).
Supporting information
10.1107/S1600536809004693/sj2571sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809004693/sj2571Isup2.hkl
The title compound was obtained by vigorously stirring a solution of 2-amino-4H-chromene-3-carbonitrile 0.5 g (2.8 mmol) in 10 ml of dimethyl formamide dimethylacetal which has been heated to reflux for 2 h. Excess dimethyl formamide dimethyl acetal was removed and the residue obtained was dissolved in acetic acid (10 ml). Amine 0.41 g (2.8 mmol) was then added and heated to reflux for an additional 2 h. The reaction mixture was concentrated and finally the residue was purified by
using petroleum ether–ethyl acetate (60:40 v/v) to get desired compound as a crystalline solid 0.59 g (Yield 63%, m.p. 513–515 K).The amine H atom was located in a difference map and refined isotropically. The remaining H atoms were placed in calculated positions with d(C—H) = 0.93 Å, Uiso = 1.2Ueq(C) for aromatic and 0.97 Å, Uiso = 1.2Ueq(C) for CH2. The highest residual electron density peak is located at 0.58 Å from C18 and the deepest hole is located at 0.69 Å from C3.
Data collection: APEX2 (Bruker, 2005); cell
APEX2 (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2003).Fig. 1. The structure of (I), showing 50% probability displacement ellipsoids and the atom-numbering scheme. | |
Fig. 2. The packing diagram of (I), viewed along the b axis, showing molecular chains along the a axis. Hydrogen bonds are shown as dashed lines. |
C21H15N3O | Dx = 1.349 Mg m−3 |
Mr = 325.36 | Melting point = 513–515 K |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 4673 reflections |
a = 13.2762 (3) Å | θ = 1.5–30.0° |
b = 8.8700 (2) Å | µ = 0.09 mm−1 |
c = 27.1997 (5) Å | T = 100 K |
V = 3203.03 (12) Å3 | Plate, colourless |
Z = 8 | 0.57 × 0.38 × 0.03 mm |
F(000) = 1360 |
Bruker SMART APEXII CCD area-detector diffractometer | 4673 independent reflections |
Radiation source: fine-focus sealed tube | 3649 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.042 |
Detector resolution: 8.33 pixels mm-1 | θmax = 30.0°, θmin = 1.5° |
ω scans | h = −18→18 |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | k = −12→12 |
Tmin = 0.901, Tmax = 0.997 | l = −37→38 |
27104 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.142 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0844P)2 + 0.3525P] where P = (Fo2 + 2Fc2)/3 |
4673 reflections | (Δ/σ)max = 0.001 |
230 parameters | Δρmax = 0.35 e Å−3 |
0 restraints | Δρmin = −0.33 e Å−3 |
C21H15N3O | V = 3203.03 (12) Å3 |
Mr = 325.36 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 13.2762 (3) Å | µ = 0.09 mm−1 |
b = 8.8700 (2) Å | T = 100 K |
c = 27.1997 (5) Å | 0.57 × 0.38 × 0.03 mm |
Bruker SMART APEXII CCD area-detector diffractometer | 4673 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 3649 reflections with I > 2σ(I) |
Tmin = 0.901, Tmax = 0.997 | Rint = 0.042 |
27104 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 0 restraints |
wR(F2) = 0.142 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | Δρmax = 0.35 e Å−3 |
4673 reflections | Δρmin = −0.33 e Å−3 |
230 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.08414 (6) | 0.31457 (10) | 0.18202 (3) | 0.0193 (2) | |
N1 | 0.18466 (7) | 0.51429 (12) | 0.30718 (4) | 0.0183 (2) | |
N2 | 0.05453 (7) | 0.44680 (12) | 0.25056 (3) | 0.0180 (2) | |
N3 | 0.35056 (7) | 0.44664 (13) | 0.29448 (3) | 0.0182 (2) | |
H1N3 | 0.4016 (12) | 0.4226 (19) | 0.2734 (6) | 0.034 (4)* | |
C1 | 0.25345 (8) | 0.44337 (14) | 0.27880 (4) | 0.0156 (2) | |
C2 | 0.09044 (9) | 0.51210 (15) | 0.29118 (4) | 0.0184 (2) | |
H2A | 0.0435 | 0.5622 | 0.3106 | 0.022* | |
C3 | 0.12498 (8) | 0.37767 (14) | 0.22322 (4) | 0.0163 (2) | |
C4 | 0.14513 (9) | 0.22381 (14) | 0.15270 (4) | 0.0174 (2) | |
C5 | 0.09574 (9) | 0.15384 (16) | 0.11364 (4) | 0.0220 (3) | |
H5A | 0.0277 | 0.1716 | 0.1081 | 0.026* | |
C6 | 0.14946 (10) | 0.05735 (16) | 0.08316 (4) | 0.0245 (3) | |
H6A | 0.1175 | 0.0100 | 0.0569 | 0.029* | |
C7 | 0.25153 (10) | 0.03159 (16) | 0.09199 (4) | 0.0234 (3) | |
H7A | 0.2873 | −0.0352 | 0.0723 | 0.028* | |
C8 | 0.29956 (9) | 0.10591 (15) | 0.13028 (4) | 0.0202 (3) | |
H8A | 0.3679 | 0.0893 | 0.1355 | 0.024* | |
C9 | 0.24765 (8) | 0.20522 (14) | 0.16123 (4) | 0.0169 (2) | |
C10 | 0.30044 (8) | 0.29292 (15) | 0.20116 (4) | 0.0178 (2) | |
H10A | 0.3420 | 0.2249 | 0.2204 | 0.021* | |
H10B | 0.3442 | 0.3677 | 0.1863 | 0.021* | |
C11 | 0.22622 (8) | 0.37036 (14) | 0.23449 (4) | 0.0156 (2) | |
C12 | 0.37886 (8) | 0.52034 (15) | 0.33935 (4) | 0.0175 (2) | |
C13 | 0.41910 (9) | 0.66208 (16) | 0.33759 (4) | 0.0218 (3) | |
H13A | 0.4274 | 0.7097 | 0.3074 | 0.026* | |
C14 | 0.44831 (10) | 0.73748 (16) | 0.38139 (5) | 0.0247 (3) | |
H14A | 0.4748 | 0.8344 | 0.3798 | 0.030* | |
C15 | 0.43757 (9) | 0.66800 (16) | 0.42576 (5) | 0.0240 (3) | |
H15A | 0.4560 | 0.7185 | 0.4543 | 0.029* | |
C16 | 0.39841 (9) | 0.51891 (16) | 0.42882 (4) | 0.0210 (3) | |
C17 | 0.38629 (10) | 0.44401 (18) | 0.47457 (4) | 0.0273 (3) | |
H17A | 0.4035 | 0.4937 | 0.5035 | 0.033* | |
C18 | 0.34979 (10) | 0.30001 (19) | 0.47687 (5) | 0.0310 (3) | |
H18A | 0.3425 | 0.2527 | 0.5072 | 0.037* | |
C19 | 0.32313 (10) | 0.22321 (18) | 0.43346 (5) | 0.0272 (3) | |
H19A | 0.3001 | 0.1243 | 0.4352 | 0.033* | |
C20 | 0.33080 (9) | 0.29311 (16) | 0.38844 (4) | 0.0215 (3) | |
H20A | 0.3113 | 0.2422 | 0.3601 | 0.026* | |
C21 | 0.36831 (8) | 0.44257 (15) | 0.38505 (4) | 0.0179 (2) |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0145 (4) | 0.0257 (5) | 0.0178 (4) | 0.0017 (3) | −0.0020 (3) | −0.0046 (3) |
N1 | 0.0160 (5) | 0.0215 (5) | 0.0175 (4) | 0.0021 (4) | 0.0008 (3) | −0.0018 (4) |
N2 | 0.0145 (4) | 0.0211 (5) | 0.0183 (4) | 0.0019 (4) | −0.0010 (3) | 0.0001 (4) |
N3 | 0.0128 (4) | 0.0267 (6) | 0.0152 (4) | 0.0008 (4) | −0.0012 (3) | −0.0035 (4) |
C1 | 0.0141 (5) | 0.0170 (6) | 0.0156 (4) | 0.0002 (4) | −0.0003 (4) | 0.0016 (4) |
C2 | 0.0163 (5) | 0.0212 (6) | 0.0178 (5) | 0.0019 (5) | 0.0020 (4) | −0.0005 (4) |
C3 | 0.0167 (5) | 0.0181 (6) | 0.0141 (4) | 0.0002 (5) | −0.0002 (4) | 0.0009 (4) |
C4 | 0.0174 (5) | 0.0189 (6) | 0.0158 (5) | −0.0008 (5) | 0.0009 (4) | 0.0005 (4) |
C5 | 0.0202 (6) | 0.0272 (7) | 0.0186 (5) | −0.0035 (5) | −0.0012 (4) | 0.0005 (5) |
C6 | 0.0279 (6) | 0.0277 (7) | 0.0178 (5) | −0.0051 (5) | −0.0005 (4) | −0.0030 (5) |
C7 | 0.0279 (6) | 0.0238 (7) | 0.0185 (5) | −0.0003 (5) | 0.0052 (5) | −0.0019 (5) |
C8 | 0.0205 (5) | 0.0217 (6) | 0.0182 (5) | 0.0016 (5) | 0.0033 (4) | 0.0015 (5) |
C9 | 0.0183 (5) | 0.0177 (6) | 0.0148 (4) | −0.0004 (4) | 0.0011 (4) | 0.0009 (4) |
C10 | 0.0138 (5) | 0.0225 (6) | 0.0171 (5) | 0.0012 (4) | 0.0001 (4) | −0.0019 (4) |
C11 | 0.0152 (5) | 0.0173 (6) | 0.0144 (4) | 0.0008 (4) | −0.0001 (4) | 0.0006 (4) |
C12 | 0.0131 (5) | 0.0227 (6) | 0.0167 (5) | 0.0023 (4) | −0.0006 (4) | −0.0028 (4) |
C13 | 0.0198 (6) | 0.0243 (7) | 0.0213 (5) | 0.0001 (5) | −0.0028 (4) | 0.0021 (5) |
C14 | 0.0228 (6) | 0.0215 (6) | 0.0297 (6) | −0.0039 (5) | −0.0053 (5) | −0.0025 (5) |
C15 | 0.0211 (6) | 0.0282 (7) | 0.0227 (5) | −0.0001 (5) | −0.0047 (4) | −0.0069 (5) |
C16 | 0.0160 (5) | 0.0288 (7) | 0.0183 (5) | 0.0003 (5) | −0.0015 (4) | −0.0033 (5) |
C17 | 0.0223 (6) | 0.0427 (9) | 0.0169 (5) | −0.0020 (6) | −0.0022 (4) | −0.0014 (5) |
C18 | 0.0262 (6) | 0.0453 (9) | 0.0214 (6) | −0.0048 (6) | −0.0008 (5) | 0.0080 (6) |
C19 | 0.0220 (6) | 0.0311 (8) | 0.0285 (6) | −0.0060 (6) | −0.0003 (5) | 0.0049 (6) |
C20 | 0.0173 (5) | 0.0252 (7) | 0.0218 (5) | −0.0017 (5) | −0.0003 (4) | −0.0016 (5) |
C21 | 0.0128 (5) | 0.0233 (6) | 0.0176 (5) | 0.0019 (5) | −0.0007 (4) | −0.0026 (5) |
O1—C3 | 1.3649 (13) | C9—C10 | 1.5085 (16) |
O1—C4 | 1.3927 (14) | C10—C11 | 1.5050 (15) |
N1—C2 | 1.3245 (15) | C10—H10A | 0.9700 |
N1—C1 | 1.3511 (14) | C10—H10B | 0.9700 |
N2—C2 | 1.3355 (15) | C12—C13 | 1.3669 (19) |
N2—C3 | 1.3432 (15) | C12—C21 | 1.4287 (16) |
N3—C1 | 1.3582 (14) | C13—C14 | 1.4202 (17) |
N3—C12 | 1.4345 (14) | C13—H13A | 0.9300 |
N3—H1N3 | 0.913 (17) | C14—C15 | 1.3626 (18) |
C1—C11 | 1.4151 (15) | C14—H14A | 0.9300 |
C2—H2A | 0.9300 | C15—C16 | 1.4234 (19) |
C3—C11 | 1.3800 (15) | C15—H15A | 0.9300 |
C4—C9 | 1.3905 (16) | C16—C17 | 1.4198 (17) |
C4—C5 | 1.3943 (16) | C16—C21 | 1.4266 (16) |
C5—C6 | 1.3886 (18) | C17—C18 | 1.368 (2) |
C5—H5A | 0.9300 | C17—H17A | 0.9300 |
C6—C7 | 1.3951 (19) | C18—C19 | 1.4082 (19) |
C6—H6A | 0.9300 | C18—H18A | 0.9300 |
C7—C8 | 1.3878 (17) | C19—C20 | 1.3764 (17) |
C7—H7A | 0.9300 | C19—H19A | 0.9300 |
C8—C9 | 1.3999 (16) | C20—C21 | 1.4191 (19) |
C8—H8A | 0.9300 | C20—H20A | 0.9300 |
C3—O1—C4 | 118.43 (9) | C11—C10—H10B | 109.3 |
C2—N1—C1 | 116.35 (10) | C9—C10—H10B | 109.3 |
C2—N2—C3 | 114.05 (10) | H10A—C10—H10B | 108.0 |
C1—N3—C12 | 121.70 (10) | C3—C11—C1 | 114.62 (10) |
C1—N3—H1N3 | 120.1 (10) | C3—C11—C10 | 121.68 (10) |
C12—N3—H1N3 | 116.5 (10) | C1—C11—C10 | 123.68 (10) |
N1—C1—N3 | 116.89 (10) | C13—C12—C21 | 120.85 (11) |
N1—C1—C11 | 121.79 (10) | C13—C12—N3 | 119.46 (11) |
N3—C1—C11 | 121.31 (10) | C21—C12—N3 | 119.64 (11) |
N1—C2—N2 | 127.97 (11) | C12—C13—C14 | 120.70 (11) |
N1—C2—H2A | 116.0 | C12—C13—H13A | 119.6 |
N2—C2—H2A | 116.0 | C14—C13—H13A | 119.6 |
N2—C3—O1 | 111.42 (9) | C15—C14—C13 | 120.09 (12) |
N2—C3—C11 | 125.21 (10) | C15—C14—H14A | 120.0 |
O1—C3—C11 | 123.37 (10) | C13—C14—H14A | 120.0 |
C9—C4—O1 | 122.82 (10) | C14—C15—C16 | 120.68 (11) |
C9—C4—C5 | 122.33 (11) | C14—C15—H15A | 119.7 |
O1—C4—C5 | 114.85 (10) | C16—C15—H15A | 119.7 |
C6—C5—C4 | 119.18 (11) | C17—C16—C15 | 121.83 (11) |
C6—C5—H5A | 120.4 | C17—C16—C21 | 118.52 (12) |
C4—C5—H5A | 120.4 | C15—C16—C21 | 119.64 (11) |
C5—C6—C7 | 119.81 (11) | C18—C17—C16 | 121.15 (12) |
C5—C6—H6A | 120.1 | C18—C17—H17A | 119.4 |
C7—C6—H6A | 120.1 | C16—C17—H17A | 119.4 |
C8—C7—C6 | 119.84 (12) | C17—C18—C19 | 120.17 (12) |
C8—C7—H7A | 120.1 | C17—C18—H18A | 119.9 |
C6—C7—H7A | 120.1 | C19—C18—H18A | 119.9 |
C7—C8—C9 | 121.60 (11) | C20—C19—C18 | 120.62 (14) |
C7—C8—H8A | 119.2 | C20—C19—H19A | 119.7 |
C9—C8—H8A | 119.2 | C18—C19—H19A | 119.7 |
C4—C9—C8 | 117.14 (10) | C19—C20—C21 | 120.30 (12) |
C4—C9—C10 | 120.92 (10) | C19—C20—H20A | 119.8 |
C8—C9—C10 | 121.91 (10) | C21—C20—H20A | 119.8 |
C11—C10—C9 | 111.40 (9) | C20—C21—C16 | 119.18 (11) |
C11—C10—H10A | 109.3 | C20—C21—C12 | 122.82 (11) |
C9—C10—H10A | 109.3 | C16—C21—C12 | 118.00 (11) |
C2—N1—C1—N3 | 179.12 (11) | N1—C1—C11—C3 | −0.19 (17) |
C2—N1—C1—C11 | −0.19 (17) | N3—C1—C11—C3 | −179.46 (11) |
C12—N3—C1—N1 | 0.71 (17) | N1—C1—C11—C10 | 178.62 (11) |
C12—N3—C1—C11 | −179.98 (11) | N3—C1—C11—C10 | −0.66 (18) |
C1—N1—C2—N2 | 0.81 (19) | C9—C10—C11—C3 | −10.17 (16) |
C3—N2—C2—N1 | −0.92 (19) | C9—C10—C11—C1 | 171.11 (11) |
C2—N2—C3—O1 | −179.33 (10) | C1—N3—C12—C13 | −99.41 (14) |
C2—N2—C3—C11 | 0.44 (18) | C1—N3—C12—C21 | 83.00 (15) |
C4—O1—C3—N2 | −172.67 (10) | C21—C12—C13—C14 | −2.11 (18) |
C4—O1—C3—C11 | 7.55 (17) | N3—C12—C13—C14 | −179.66 (11) |
C3—O1—C4—C9 | −5.68 (16) | C12—C13—C14—C15 | 0.8 (2) |
C3—O1—C4—C5 | 174.98 (11) | C13—C14—C15—C16 | 0.9 (2) |
C9—C4—C5—C6 | 2.60 (19) | C14—C15—C16—C17 | −179.90 (12) |
O1—C4—C5—C6 | −178.05 (11) | C14—C15—C16—C21 | −1.21 (18) |
C4—C5—C6—C7 | 0.09 (19) | C15—C16—C17—C18 | −179.14 (12) |
C5—C6—C7—C8 | −1.9 (2) | C21—C16—C17—C18 | 2.15 (19) |
C6—C7—C8—C9 | 1.13 (19) | C16—C17—C18—C19 | −0.2 (2) |
O1—C4—C9—C8 | 177.40 (11) | C17—C18—C19—C20 | −1.8 (2) |
C5—C4—C9—C8 | −3.31 (18) | C18—C19—C20—C21 | 1.7 (2) |
O1—C4—C9—C10 | −4.59 (17) | C19—C20—C21—C16 | 0.33 (18) |
C5—C4—C9—C10 | 174.71 (11) | C19—C20—C21—C12 | 179.40 (12) |
C7—C8—C9—C4 | 1.42 (18) | C17—C16—C21—C20 | −2.21 (17) |
C7—C8—C9—C10 | −176.57 (12) | C15—C16—C21—C20 | 179.06 (11) |
C4—C9—C10—C11 | 11.79 (16) | C17—C16—C21—C12 | 178.68 (11) |
C8—C9—C10—C11 | −170.29 (11) | C15—C16—C21—C12 | −0.06 (17) |
N2—C3—C11—C1 | 0.05 (18) | C13—C12—C21—C20 | −177.38 (11) |
O1—C3—C11—C1 | 179.80 (10) | N3—C12—C21—C20 | 0.17 (17) |
N2—C3—C11—C10 | −178.78 (11) | C13—C12—C21—C16 | 1.70 (17) |
O1—C3—C11—C10 | 0.97 (18) | N3—C12—C21—C16 | 179.25 (10) |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H1N3···N2i | 0.913 (16) | 2.143 (16) | 2.9722 (13) | 150.6 (14) |
C13—H13A···N2ii | 0.93 | 2.62 | 3.4791 (16) | 154 |
C20—H20A···N3 | 0.93 | 2.60 | 2.9077 (15) | 100 |
C20—H20A···N1iii | 0.93 | 2.48 | 3.3232 (17) | 150 |
C10—H10A···Cg1iii | 0.97 | 2.76 | 3.5855 (14) | 143 |
C10—H10B···Cg2ii | 0.97 | 2.96 | 3.6792 (14) | 132 |
C13—H13A···Cg1ii | 0.93 | 2.63 | 3.3503 (14) | 135 |
Symmetry codes: (i) x+1/2, y, −z+1/2; (ii) −x+1/2, y+1/2, z; (iii) −x+1/2, y−1/2, z. |
Experimental details
Crystal data | |
Chemical formula | C21H15N3O |
Mr | 325.36 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 100 |
a, b, c (Å) | 13.2762 (3), 8.8700 (2), 27.1997 (5) |
V (Å3) | 3203.03 (12) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.57 × 0.38 × 0.03 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.901, 0.997 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 27104, 4673, 3649 |
Rint | 0.042 |
(sin θ/λ)max (Å−1) | 0.703 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.142, 1.08 |
No. of reflections | 4673 |
No. of parameters | 230 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.35, −0.33 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H1N3···N2i | 0.913 (16) | 2.143 (16) | 2.9722 (13) | 150.6 (14) |
C13—H13A···N2ii | 0.93 | 2.62 | 3.4791 (16) | 154 |
C20—H20A···N3 | 0.93 | 2.60 | 2.9077 (15) | 100 |
C20—H20A···N1iii | 0.93 | 2.48 | 3.3232 (17) | 150 |
C10—H10A···Cg1iii | 0.97 | 2.76 | 3.5855 (14) | 143 |
C10—H10B···Cg2ii | 0.97 | 2.96 | 3.6792 (14) | 132 |
C13—H13A···Cg1ii | 0.93 | 2.63 | 3.3503 (14) | 135 |
Symmetry codes: (i) x+1/2, y, −z+1/2; (ii) −x+1/2, y+1/2, z; (iii) −x+1/2, y−1/2, z. |
Footnotes
‡Additional correspondence author, e-mail: suchada.c@psu.ac.th.
Acknowledgements
AMI is grateful to the Director, NITK, Surathkal, India, for providing research facilities. SR thanks Dr Gautam Das, Syngene International Ltd, Bangalore, India, for allocation of research resources. The authors also thank the Universiti Sains Malaysia for Research University Golden Goose Grant No. 1001/PFIZIK/811012.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Condensed heterocyclic systems are of considerable interest not only because of their potential biological activity but also because of their versatility as synthons in organic transformations (Bohme & Haake, 1976; Taylor & McKillop, 1970; Erian, 1993). A series of 1,6-naphthyrimidines have been demonstrated to possess antihuman cytomegalovirus (HCMV) activity (Falardeau et al., 2000; Bedard et al., 2000). Furthermore, chromenes and their fused heterocyclic derivatives have attracted a great deal of interest due to their wide applications in the field of pharmaceuticals (Martinez & Marco, 1997; Tandon et al., 1991). In view of these observations, we have synthesized title compound which is a new chromenopyrimidine molecule and its crystal structure was reported here.
In the structure of the title compound (I) (Fig. 1), the 10H-9-oxa-1,3-diaza-anthracene ring system is slightly bent as indicated by the dihedral angles between the central ring and the two side rings being 3.99 (6)° (for the C1–C3/C11/N1–N2 ring) and 4.80 (6)° (for the C4–C9 ring). The naphthalene ring system is planar with the largest deviation 0.027 (1) Å for atom C9. The 10H-9-oxa-1,3-diaza-anthracene ring is almost perpendicular with the naphthalene ring as shown by the dihedral angle between these two ring systems being 83.00 (15)°. The naphthalene–amine moiety (N3/C12–C21) is in (+)-syn-clinal with respect to the C1–C3/C11/N1–N2 ring with a torsion angle C1—N3—C12–C21 = 83.00 (15)°. The bond distances have normal values (Allen et al., 1987).
In the crystal packing, N—H···N hydrogen bonds (Table 1, Fig. 2) link the molecules into chains along the a axis and these molecular chains are stacked along the b axis. The crystal is further stabilized by weak C—H···N and C—H···π interactions; Cg1 and Cg2 are the centroids of C1–C3/C11/N1–N2 and C4–C9 rings, respectively (Table 1).