organic compounds
2-Carboxypyridinium hydrogen chloranilate
aDepartment of Chemistry, Faculty of Science, Okayama University, Okayama 700-8530, Japan
*Correspondence e-mail: ishidah@cc.okayama-u.ac.jp
In the 6H6NO2+·C6HCl2O4−, the pyridine ring and the mean plane of the hydrogen chloranilate anion form a dihedral angle of 77.40 (8)°. The ionic components are held together by N—H⋯O and O—H⋯O hydrogen bonds, forming a supramolecular ladder. C—H⋯O interactions are also present.
of the title salt, CRelated literature
For the structures of related carboxypyridinium hydrogen chloranilates, see: Gotoh et al. (2006); Tabuchi et al. (2005); Ishida (2009).
Experimental
Crystal data
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Refinement
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Data collection: PROCESS-AUTO (Rigaku/MSC, 2004); cell PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: CrystalStructure and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536809006412/tk2376sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809006412/tk2376Isup2.hkl
Crystals were obtained by slow evaporation from a methanol solution (ca 30 ml) containing a 1:1 molar ratio of chloranilic acid (0.302 g) and picolinic acid (0.179 g).
The H atoms attached to O and N were located from a difference Fourier map and refined isotropically to O—H = 0.79 (3) & 0.90 (3) Å and N—H = 0.92 (4) Å. The remaining H atoms were included in the riding approximation with C—H = 0.95 Å, and with Uiso(H) = 1.2Ueq(C).
Data collection: PROCESS-AUTO (Rigaku/MSC, 2004); cell
PROCESS-AUTO (Rigaku/MSC, 2004); data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: CrystalStructure (Rigaku/MSC, 2004) and PLATON (Spek, 2009).Fig. 1. Molecular components of (I) showing the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. Intra- and inter-molecular N—H···O hydrogen bonds are indicated by dashed lines. | |
Fig. 2. A partial packing diagram, viewed approximately along the a axis, showing the hydrogen-bonded supramolecular ladder. Dashed lines show N—H···O and O—H···O hydrogen bonds (symmetry codes as given in Table 1). |
C6H6NO2+·C6HCl2O4− | F(000) = 672.00 |
Mr = 332.10 | Dx = 1.795 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71075 Å |
Hall symbol: -P 2ybc | Cell parameters from 7392 reflections |
a = 9.4166 (8) Å | θ = 3.0–30.0° |
b = 19.6900 (16) Å | µ = 0.56 mm−1 |
c = 6.7089 (6) Å | T = 103 K |
β = 99.043 (3)° | Platelet, dark purple |
V = 1228.45 (18) Å3 | 0.30 × 0.30 × 0.23 mm |
Z = 4 |
Rigaku R-AXIS RAPID-II diffractometer | 2228 reflections with I > 2σ(I) |
Detector resolution: 10.00 pixels mm-1 | Rint = 0.047 |
ω scans | θmax = 30.0° |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | h = −13→13 |
Tmin = 0.847, Tmax = 0.880 | k = −27→27 |
9710 measured reflections | l = −8→9 |
3433 independent reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.144 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.10 | w = 1/[σ2(Fo2) + (0.0659P)2 + 0.8975P] where P = (Fo2 + 2Fc2)/3 |
3433 reflections | (Δ/σ)max < 0.001 |
202 parameters | Δρmax = 0.47 e Å−3 |
0 restraints | Δρmin = −0.92 e Å−3 |
Primary atom site location: structure-invariant direct methods |
C6H6NO2+·C6HCl2O4− | V = 1228.45 (18) Å3 |
Mr = 332.10 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 9.4166 (8) Å | µ = 0.56 mm−1 |
b = 19.6900 (16) Å | T = 103 K |
c = 6.7089 (6) Å | 0.30 × 0.30 × 0.23 mm |
β = 99.043 (3)° |
Rigaku R-AXIS RAPID-II diffractometer | 3433 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 2228 reflections with I > 2σ(I) |
Tmin = 0.847, Tmax = 0.880 | Rint = 0.047 |
9710 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 0 restraints |
wR(F2) = 0.144 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.10 | Δρmax = 0.47 e Å−3 |
3433 reflections | Δρmin = −0.92 e Å−3 |
202 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | −0.17894 (6) | 0.28996 (3) | 0.27912 (9) | 0.02060 (16) | |
Cl2 | 0.46528 (6) | 0.29140 (3) | 0.10812 (9) | 0.02077 (16) | |
O1 | 0.00723 (19) | 0.40867 (8) | 0.2367 (3) | 0.0218 (4) | |
O2 | 0.01147 (19) | 0.17042 (9) | 0.2397 (3) | 0.0184 (3) | |
O3 | 0.27117 (18) | 0.17271 (8) | 0.1488 (3) | 0.0196 (4) | |
O4 | 0.27772 (19) | 0.41277 (8) | 0.1577 (3) | 0.0209 (4) | |
O5 | 0.12383 (18) | 0.45615 (9) | 0.6917 (3) | 0.0215 (4) | |
O6 | 0.3466 (2) | 0.47658 (10) | 0.8601 (3) | 0.0265 (4) | |
N1 | 0.1860 (2) | 0.52690 (11) | 0.3720 (3) | 0.0199 (4) | |
C1 | 0.0667 (2) | 0.35416 (11) | 0.2174 (3) | 0.0164 (4) | |
C2 | −0.0036 (2) | 0.28950 (11) | 0.2347 (3) | 0.0160 (4) | |
C3 | 0.0678 (2) | 0.23079 (11) | 0.2188 (3) | 0.0154 (4) | |
C4 | 0.2206 (2) | 0.22965 (11) | 0.1715 (3) | 0.0155 (4) | |
C5 | 0.2899 (2) | 0.29272 (11) | 0.1544 (4) | 0.0170 (4) | |
C6 | 0.2232 (2) | 0.35480 (12) | 0.1732 (3) | 0.0165 (4) | |
C7 | 0.2794 (3) | 0.52837 (12) | 0.5464 (4) | 0.0198 (5) | |
C8 | 0.3984 (3) | 0.56970 (13) | 0.5626 (4) | 0.0229 (5) | |
H8 | 0.4656 | 0.5708 | 0.6840 | 0.027* | |
C9 | 0.4194 (3) | 0.60996 (13) | 0.3987 (4) | 0.0262 (5) | |
H9 | 0.5010 | 0.6388 | 0.4077 | 0.031* | |
C10 | 0.3206 (3) | 0.60759 (13) | 0.2230 (4) | 0.0268 (5) | |
H10 | 0.3332 | 0.6352 | 0.1109 | 0.032* | |
C11 | 0.2035 (3) | 0.56488 (13) | 0.2118 (4) | 0.0239 (5) | |
H11 | 0.1357 | 0.5624 | 0.0913 | 0.029* | |
C12 | 0.2418 (3) | 0.48289 (12) | 0.7090 (4) | 0.0195 (5) | |
H1 | 0.109 (5) | 0.498 (2) | 0.363 (6) | 0.053 (11)* | |
H2 | 0.071 (4) | 0.1437 (17) | 0.227 (5) | 0.032 (9)* | |
H6 | 0.319 (4) | 0.4534 (18) | 0.964 (6) | 0.043 (10)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0146 (3) | 0.0253 (3) | 0.0233 (3) | 0.0013 (2) | 0.0076 (2) | −0.0006 (2) |
Cl2 | 0.0151 (3) | 0.0258 (3) | 0.0230 (3) | −0.0018 (2) | 0.0080 (2) | −0.0011 (2) |
O1 | 0.0207 (8) | 0.0196 (8) | 0.0256 (9) | 0.0020 (7) | 0.0051 (7) | −0.0022 (7) |
O2 | 0.0163 (8) | 0.0164 (7) | 0.0238 (9) | 0.0013 (7) | 0.0074 (7) | −0.0008 (7) |
O3 | 0.0176 (8) | 0.0201 (8) | 0.0220 (8) | 0.0016 (7) | 0.0063 (7) | −0.0008 (7) |
O4 | 0.0232 (9) | 0.0200 (8) | 0.0210 (9) | −0.0027 (7) | 0.0083 (7) | 0.0019 (6) |
O5 | 0.0177 (8) | 0.0212 (8) | 0.0274 (9) | −0.0017 (7) | 0.0094 (7) | 0.0018 (7) |
O6 | 0.0221 (9) | 0.0336 (10) | 0.0235 (9) | −0.0063 (8) | 0.0024 (7) | 0.0050 (8) |
N1 | 0.0145 (9) | 0.0229 (10) | 0.0229 (10) | −0.0018 (8) | 0.0050 (8) | 0.0000 (8) |
C1 | 0.0182 (10) | 0.0180 (10) | 0.0130 (10) | 0.0007 (9) | 0.0020 (8) | 0.0001 (8) |
C2 | 0.0130 (10) | 0.0197 (10) | 0.0152 (10) | 0.0009 (8) | 0.0023 (8) | −0.0019 (8) |
C3 | 0.0154 (10) | 0.0183 (10) | 0.0132 (10) | −0.0002 (8) | 0.0048 (8) | 0.0005 (8) |
C4 | 0.0149 (10) | 0.0193 (10) | 0.0132 (10) | 0.0009 (8) | 0.0048 (8) | 0.0003 (8) |
C5 | 0.0132 (10) | 0.0207 (10) | 0.0176 (10) | −0.0013 (9) | 0.0041 (8) | −0.0006 (9) |
C6 | 0.0165 (10) | 0.0204 (10) | 0.0133 (10) | −0.0014 (9) | 0.0039 (8) | −0.0011 (8) |
C7 | 0.0179 (11) | 0.0184 (11) | 0.0241 (12) | 0.0001 (9) | 0.0067 (9) | −0.0006 (9) |
C8 | 0.0188 (11) | 0.0236 (12) | 0.0272 (13) | 0.0000 (10) | 0.0066 (10) | −0.0018 (10) |
C9 | 0.0223 (12) | 0.0231 (12) | 0.0355 (14) | −0.0031 (10) | 0.0118 (11) | 0.0023 (11) |
C10 | 0.0292 (13) | 0.0248 (12) | 0.0291 (13) | 0.0006 (11) | 0.0129 (11) | 0.0049 (10) |
C11 | 0.0229 (12) | 0.0270 (12) | 0.0221 (12) | 0.0049 (10) | 0.0051 (10) | 0.0028 (10) |
C12 | 0.0210 (11) | 0.0193 (10) | 0.0197 (11) | −0.0002 (9) | 0.0076 (9) | −0.0021 (9) |
Cl1—C2 | 1.723 (2) | C1—C6 | 1.548 (3) |
Cl2—C5 | 1.727 (2) | C2—C3 | 1.350 (3) |
O1—C1 | 1.227 (3) | C3—C4 | 1.521 (3) |
O2—C3 | 1.318 (3) | C4—C5 | 1.416 (3) |
O2—H2 | 0.79 (3) | C5—C6 | 1.389 (3) |
O3—C4 | 1.237 (3) | C7—C8 | 1.375 (3) |
O4—C6 | 1.263 (3) | C7—C12 | 1.497 (3) |
O5—C12 | 1.218 (3) | C8—C9 | 1.394 (4) |
O6—C12 | 1.305 (3) | C8—H8 | 0.9500 |
O6—H6 | 0.90 (4) | C9—C10 | 1.383 (4) |
N1—C11 | 1.340 (3) | C9—H9 | 0.9500 |
N1—C7 | 1.349 (3) | C10—C11 | 1.379 (4) |
N1—H1 | 0.92 (4) | C10—H10 | 0.9500 |
C1—C2 | 1.448 (3) | C11—H11 | 0.9500 |
C3—O2—H2 | 107 (3) | O4—C6—C1 | 115.8 (2) |
C12—O6—H6 | 112 (2) | C5—C6—C1 | 117.90 (19) |
C11—N1—C7 | 122.5 (2) | N1—C7—C8 | 119.6 (2) |
C11—N1—H1 | 119 (2) | N1—C7—C12 | 115.0 (2) |
C7—N1—H1 | 118 (2) | C8—C7—C12 | 125.4 (2) |
O1—C1—C2 | 122.6 (2) | C7—C8—C9 | 119.3 (2) |
O1—C1—C6 | 118.5 (2) | C7—C8—H8 | 120.4 |
C2—C1—C6 | 118.91 (19) | C9—C8—H8 | 120.4 |
C3—C2—C1 | 120.4 (2) | C10—C9—C8 | 119.5 (2) |
C3—C2—Cl1 | 121.40 (18) | C10—C9—H9 | 120.2 |
C1—C2—Cl1 | 118.15 (17) | C8—C9—H9 | 120.2 |
O2—C3—C2 | 123.3 (2) | C11—C10—C9 | 119.5 (2) |
O2—C3—C4 | 114.75 (19) | C11—C10—H10 | 120.3 |
C2—C3—C4 | 121.9 (2) | C9—C10—H10 | 120.3 |
O3—C4—C5 | 126.4 (2) | N1—C11—C10 | 119.7 (2) |
O3—C4—C3 | 115.7 (2) | N1—C11—H11 | 120.2 |
C5—C4—C3 | 117.85 (19) | C10—C11—H11 | 120.2 |
C6—C5—C4 | 122.9 (2) | O5—C12—O6 | 126.9 (2) |
C6—C5—Cl2 | 119.23 (17) | O5—C12—C7 | 120.4 (2) |
C4—C5—Cl2 | 117.86 (17) | O6—C12—C7 | 112.7 (2) |
O4—C6—C5 | 126.3 (2) | ||
O1—C1—C2—C3 | −177.9 (2) | C4—C5—C6—C1 | 0.7 (3) |
C6—C1—C2—C3 | 2.1 (3) | Cl2—C5—C6—C1 | −179.21 (16) |
O1—C1—C2—Cl1 | 1.3 (3) | O1—C1—C6—O4 | −0.9 (3) |
C6—C1—C2—Cl1 | −178.77 (16) | C2—C1—C6—O4 | 179.2 (2) |
C1—C2—C3—O2 | 177.7 (2) | O1—C1—C6—C5 | 179.2 (2) |
Cl1—C2—C3—O2 | −1.4 (3) | C2—C1—C6—C5 | −0.7 (3) |
C1—C2—C3—C4 | −3.3 (3) | C11—N1—C7—C8 | −0.6 (4) |
Cl1—C2—C3—C4 | 177.58 (16) | C11—N1—C7—C12 | 179.6 (2) |
O2—C3—C4—O3 | 3.3 (3) | N1—C7—C8—C9 | 0.7 (4) |
C2—C3—C4—O3 | −175.8 (2) | C12—C7—C8—C9 | −179.5 (2) |
O2—C3—C4—C5 | −177.73 (19) | C7—C8—C9—C10 | −0.1 (4) |
C2—C3—C4—C5 | 3.2 (3) | C8—C9—C10—C11 | −0.7 (4) |
O3—C4—C5—C6 | 177.0 (2) | C7—N1—C11—C10 | −0.2 (4) |
C3—C4—C5—C6 | −1.8 (3) | C9—C10—C11—N1 | 0.8 (4) |
O3—C4—C5—Cl2 | −3.0 (3) | N1—C7—C12—O5 | −11.4 (3) |
C3—C4—C5—Cl2 | 178.11 (16) | C8—C7—C12—O5 | 168.8 (2) |
C4—C5—C6—O4 | −179.2 (2) | N1—C7—C12—O6 | 168.4 (2) |
Cl2—C5—C6—O4 | 0.8 (3) | C8—C7—C12—O6 | −11.4 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1 | 0.92 (4) | 2.11 (3) | 2.932 (2) | 147 (3) |
N1—H1···O5 | 0.92 (4) | 2.33 (4) | 2.698 (2) | 103 (2) |
N1—H1···O5i | 0.92 (4) | 2.34 (4) | 2.900 (2) | 119 (3) |
O2—H2···O3 | 0.79 (3) | 2.11 (3) | 2.612 (2) | 122 (3) |
O2—H2···O5ii | 0.79 (3) | 2.05 (3) | 2.746 (2) | 148 (3) |
O6—H6···O4iii | 0.90 (3) | 1.63 (3) | 2.528 (2) | 177.1 (15) |
C8—H8···O4iv | 0.95 | 2.50 | 3.338 (3) | 147 |
C9—H9···O3v | 0.95 | 2.33 | 3.227 (3) | 156 |
C11—H11···O1vi | 0.95 | 2.46 | 3.374 (3) | 162 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) x, −y+1/2, z−1/2; (iii) x, y, z+1; (iv) −x+1, −y+1, −z+1; (v) −x+1, y+1/2, −z+1/2; (vi) −x, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C6H6NO2+·C6HCl2O4− |
Mr | 332.10 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 103 |
a, b, c (Å) | 9.4166 (8), 19.6900 (16), 6.7089 (6) |
β (°) | 99.043 (3) |
V (Å3) | 1228.45 (18) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.56 |
Crystal size (mm) | 0.30 × 0.30 × 0.23 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPID-II diffractometer |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.847, 0.880 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9710, 3433, 2228 |
Rint | 0.047 |
(sin θ/λ)max (Å−1) | 0.703 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.144, 1.10 |
No. of reflections | 3433 |
No. of parameters | 202 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.47, −0.92 |
Computer programs: PROCESS-AUTO (Rigaku/MSC, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), CrystalStructure (Rigaku/MSC, 2004) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1 | 0.92 (4) | 2.11 (3) | 2.932 (2) | 147 (3) |
O2—H2···O5i | 0.79 (3) | 2.05 (3) | 2.746 (2) | 148 (3) |
O6—H6···O4ii | 0.90 (3) | 1.63 (3) | 2.528 (2) | 177.1 (15) |
C8—H8···O4iii | 0.95 | 2.50 | 3.338 (3) | 147 |
C9—H9···O3iv | 0.95 | 2.33 | 3.227 (3) | 156 |
C11—H11···O1v | 0.95 | 2.46 | 3.374 (3) | 162 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) x, y, z+1; (iii) −x+1, −y+1, −z+1; (iv) −x+1, y+1/2, −z+1/2; (v) −x, −y+1, −z. |
Acknowledgements
This work was supported by a Grant-in-Aid for Scientific Research (C) (No. 19550018) from the Japan Society for the Promotion of Science.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title salt, (I), was prepared in order to extend our study on D—H···A hydrogen bonding (D = N, O or C; A = N, O or Cl) in chloranilic acid – substituted-pyridine systems (Gotoh et al., 2006; Tabuchi et al., 2005).
Compound (I) comprises 2-carboxypyridinium cations and hydrogen chloranilate anions in the ratio 1:1. Ions directly connected by an N—H···O hydrogen bond, Fig. 1, form a dihedral angle between their respective mean planes of 77.40 (8)°. In the cation, the carboxy O5/O6/C12 plane forms a dihedral angle of 11.44 (6)° with the pyridine ring, which is similar to those of 2.74 (6) and 10.01 (3)° observed in 3-carboxypyridinium hydrogen chloranilate and 4-carboxypyridinium hydrogen chloranilate monohydrate, respectively (Ishida, 2009). The ions are further connected by O—H···O hydrogen bonds (Table 1) to afford a supramolecular ladder running along the c axis (Fig. 2). The ladders are linked by weaker N—H···O hydrogen bonds and C—H···O contacts to form a 3-D network (Table 1).