organic compounds
(1RS,2RS,3RS)-1,2-Dimethoxy-3-methyl-2-phenyl-1-(2-thienyl)cyclopropane
aDepartamento de Química Física y Analítica, Facultad de Química, Universidad de Oviedo, C/ Julián Clavería, 8, 33006 Oviedo, Spain, and bDepartamento de Química Orgánica e Inorgánica, Facultad de Química, Universidad de Oviedo, C/ Julián Clavería, 8, 33006 Oviedo, Spain
*Correspondence e-mail: sgg@uniovi.es
In the title compound, C16H18O2S, a new cis-1,2-dimethoxycyclopropane, the two methoxy groups are in a cis configuration and in trans positions with respect to the H atom and the phenyl and thienyl rings on the cyclopropyl group. The molecular packing is dominated by weak intermolecular C—H⋯O interactions, allowing the formation of zigzag chains propagating parallel to the c axis. The dihedral angle between the aromatic rings is 86.12 (8)°.
Related literature
For related literature on the chemistry, see: Lebel et al. (2003). For a general overview of the biological implications of cyclopropane-related derivatives, see: de Meijere et al. (2003). For their occurrence, see: Wessjohann et al. (2003).
Experimental
Crystal data
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Refinement
|
Data collection: CrysAlis CCD (Oxford Diffraction, 2006); cell CrysAlis RED (Oxford Diffraction, 2006); data reduction: CrysAlis RED; program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536809009441/cs2110sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809009441/cs2110Isup2.hkl
Lithium enolate of 2-acetylthiophene was prepared by treatment of a solution of the corresponding ketone (1.2 mmol, 151 mg) and lithium diisopropylamide (1.2 mmol, 0.39 M, 3.1 ml) at 195 K for 30 mins. Pentacarbonyl(1-methoxy-1-phenylmethylene)-chromium (1 mmol, 312 mg) in THF (10 ml) was added over lithium enolate solution at 195 K. Cooling bath was removed and the reaction mixture allowed to warm up to 273 K and stirred for a further 45 mins, concentrated in high vacuum, redisolved in Et2O (10 ml) and cooled to 195 K. TfOMe (2.0 mmol, 224 µL) was added dropwise to the mixture. After 5 mins, cooling bath was removed and the reaction mixture was stirred for 30 min while allowing the temperature to reach 273 K. The reaction mixture was quenched with NH4Cl (20 ml). The resulting mixture was diluted with hexanes/ethyl acetate, 10/1 (110 ml) and subjected to air oxidation under sunlight. After 2–12 h the suspension was filtered through Celite and extracted with diethyl ether (3 x 10 ml). The organic layers were combined, dried over anhydrous Na2SO4 and concentrated in vacuo. The crude product was purified by flash
on silica gel (hexanes/ethyl acetate, 20/1) to yield the title compound (277 mg, 77%) as a 1:1 diastereoisomer mixture of the all-S (1,2,3) and all-R forms.At the end of the
the highest peak in the electron density was 0.47 e Å -3. The deepest hole was -0.52 e Å -3.Data collection: CrysAlis CCD (Oxford Diffraction, 2006); cell
CrysAlis RED (Oxford Diffraction, 2006); data reduction: CrysAlis RED (Oxford Diffraction, 2006); program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).Fig. 1. A view of the title compound with displacement ellipsoids drawn at 50% probability level. |
C16H18O2S | F(000) = 584 |
Mr = 274.36 | Dx = 1.244 Mg m−3 |
Monoclinic, P21/c | Cu Kα radiation, λ = 1.54184 Å |
Hall symbol: -P 2ybc | Cell parameters from 5163 reflections |
a = 12.9924 (3) Å | θ = 4.3–74.9° |
b = 9.7194 (2) Å | µ = 1.92 mm−1 |
c = 14.7960 (3) Å | T = 293 K |
β = 128.395 (1)° | Prism, colourless |
V = 1464.37 (6) Å3 | 0.56 × 0.35 × 0.28 mm |
Z = 4 |
Oxford Diffraction Nova diffractometer | 2830 independent reflections |
Radiation source: Nova (Cu) X-ray Source | 2435 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.021 |
Detector resolution: 8.2640 pixels mm-1 | θmax = 75.0°, θmin = 4.3° |
ω scans | h = −15→15 |
Absorption correction: part of the (XABS2; Parkin et al., 1995) | model (ΔF) k = −12→11 |
Tmin = 0.330, Tmax = 0.581 | l = −16→18 |
7070 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.055 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.192 | H-atom parameters constrained |
S = 1.16 | w = 1/[σ2(Fo2) + (0.1086P)2 + 0.4259P] where P = (Fo2 + 2Fc2)/3 |
2830 reflections | (Δ/σ)max < 0.001 |
172 parameters | Δρmax = 0.47 e Å−3 |
0 restraints | Δρmin = −0.52 e Å−3 |
C16H18O2S | V = 1464.37 (6) Å3 |
Mr = 274.36 | Z = 4 |
Monoclinic, P21/c | Cu Kα radiation |
a = 12.9924 (3) Å | µ = 1.92 mm−1 |
b = 9.7194 (2) Å | T = 293 K |
c = 14.7960 (3) Å | 0.56 × 0.35 × 0.28 mm |
β = 128.395 (1)° |
Oxford Diffraction Nova diffractometer | 2830 independent reflections |
Absorption correction: part of the refinement model (ΔF) (XABS2; Parkin et al., 1995) | 2435 reflections with I > 2σ(I) |
Tmin = 0.330, Tmax = 0.581 | Rint = 0.021 |
7070 measured reflections |
R[F2 > 2σ(F2)] = 0.055 | 0 restraints |
wR(F2) = 0.192 | H-atom parameters constrained |
S = 1.16 | Δρmax = 0.47 e Å−3 |
2830 reflections | Δρmin = −0.52 e Å−3 |
172 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.20782 (8) | −0.21540 (8) | 0.43464 (7) | 0.0761 (3) | |
O1 | 0.21967 (15) | −0.00779 (16) | 0.12428 (13) | 0.0513 (4) | |
O2 | 0.17975 (16) | −0.20993 (15) | 0.22182 (15) | 0.0549 (4) | |
C2 | 0.24847 (18) | −0.0958 (2) | 0.29248 (17) | 0.0431 (5) | |
C14 | 0.2341 (2) | 0.0488 (3) | 0.43703 (18) | 0.0521 (5) | |
H14 | 0.2479 | 0.1376 | 0.4230 | 0.063* | |
C13 | 0.22814 (19) | −0.0728 (2) | 0.37976 (18) | 0.0473 (5) | |
C7 | 0.2809 (2) | 0.1667 (2) | 0.26751 (17) | 0.0462 (5) | |
C8 | 0.3982 (3) | 0.2360 (3) | 0.3460 (2) | 0.0597 (6) | |
H8 | 0.4776 | 0.1894 | 0.3840 | 0.072* | |
C4 | 0.2883 (3) | 0.0554 (3) | 0.0888 (2) | 0.0654 (7) | |
H4B | 0.2447 | 0.0343 | 0.0091 | 0.098* | |
H4A | 0.3767 | 0.0211 | 0.1350 | 0.098* | |
H4C | 0.2898 | 0.1533 | 0.0982 | 0.098* | |
C1 | 0.27813 (19) | 0.0184 (2) | 0.24060 (17) | 0.0435 (5) | |
C12 | 0.1637 (2) | 0.2390 (3) | 0.2108 (2) | 0.0566 (6) | |
H12 | 0.0844 | 0.1941 | 0.1575 | 0.068* | |
C3 | 0.38579 (19) | −0.0804 (2) | 0.32878 (19) | 0.0499 (5) | |
H3 | 0.4492 | −0.0403 | 0.4056 | 0.060* | |
C16 | 0.2013 (3) | −0.1224 (4) | 0.5271 (2) | 0.0744 (8) | |
H16 | 0.1892 | −0.1606 | 0.5775 | 0.089* | |
C5 | 0.4434 (3) | −0.1874 (3) | 0.2983 (3) | 0.0680 (7) | |
H5C | 0.5304 | −0.1603 | 0.3283 | 0.102* | |
H5B | 0.3894 | −0.1960 | 0.2160 | 0.102* | |
H5A | 0.4471 | −0.2742 | 0.3312 | 0.102* | |
C6 | 0.0420 (3) | −0.1869 (3) | 0.1399 (2) | 0.0707 (7) | |
H6C | 0.0000 | −0.2683 | 0.0944 | 0.106* | |
H6A | 0.0258 | −0.1117 | 0.0904 | 0.106* | |
H6B | 0.0073 | −0.1650 | 0.1795 | 0.106* | |
C9 | 0.3975 (3) | 0.3743 (3) | 0.3681 (3) | 0.0770 (8) | |
H9 | 0.4764 | 0.4199 | 0.4213 | 0.092* | |
C15 | 0.2154 (3) | 0.0112 (3) | 0.5202 (2) | 0.0725 (8) | |
H15 | 0.2134 | 0.0758 | 0.5654 | 0.087* | |
C10 | 0.2806 (4) | 0.4449 (3) | 0.3115 (3) | 0.0805 (9) | |
H10 | 0.2808 | 0.5378 | 0.3265 | 0.097* | |
C11 | 0.1640 (3) | 0.3783 (3) | 0.2333 (3) | 0.0722 (7) | |
H11 | 0.0851 | 0.4260 | 0.1953 | 0.087* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0953 (6) | 0.0630 (5) | 0.0924 (6) | 0.0042 (3) | 0.0694 (5) | 0.0161 (3) |
O1 | 0.0570 (8) | 0.0570 (9) | 0.0485 (8) | −0.0101 (7) | 0.0369 (7) | −0.0091 (6) |
O2 | 0.0592 (9) | 0.0437 (9) | 0.0685 (10) | −0.0084 (6) | 0.0430 (8) | −0.0110 (7) |
C2 | 0.0444 (10) | 0.0407 (10) | 0.0474 (10) | −0.0004 (7) | 0.0300 (8) | −0.0020 (8) |
C14 | 0.0751 (14) | 0.0535 (12) | 0.0511 (11) | 0.0033 (10) | 0.0508 (11) | 0.0016 (9) |
C13 | 0.0455 (10) | 0.0502 (12) | 0.0485 (11) | 0.0042 (8) | 0.0304 (9) | 0.0057 (8) |
C7 | 0.0570 (11) | 0.0442 (11) | 0.0512 (10) | −0.0057 (9) | 0.0404 (10) | −0.0038 (8) |
C8 | 0.0634 (13) | 0.0580 (14) | 0.0687 (14) | −0.0138 (11) | 0.0464 (12) | −0.0144 (11) |
C4 | 0.0861 (17) | 0.0669 (16) | 0.0714 (15) | −0.0114 (13) | 0.0628 (14) | −0.0076 (12) |
C1 | 0.0441 (10) | 0.0458 (11) | 0.0454 (10) | −0.0042 (8) | 0.0302 (8) | −0.0044 (8) |
C12 | 0.0645 (13) | 0.0530 (13) | 0.0613 (13) | 0.0040 (10) | 0.0435 (11) | 0.0036 (10) |
C3 | 0.0434 (10) | 0.0512 (12) | 0.0545 (11) | 0.0004 (8) | 0.0301 (9) | −0.0065 (9) |
C16 | 0.0739 (16) | 0.095 (2) | 0.0701 (15) | 0.0119 (15) | 0.0523 (14) | 0.0275 (15) |
C5 | 0.0604 (13) | 0.0686 (16) | 0.0820 (17) | 0.0100 (11) | 0.0477 (13) | −0.0076 (13) |
C6 | 0.0588 (14) | 0.0811 (18) | 0.0701 (15) | −0.0210 (12) | 0.0389 (13) | −0.0191 (13) |
C9 | 0.104 (2) | 0.0571 (15) | 0.0944 (19) | −0.0321 (15) | 0.0740 (18) | −0.0298 (14) |
C15 | 0.0888 (18) | 0.088 (2) | 0.0629 (15) | 0.0051 (15) | 0.0579 (15) | 0.0005 (13) |
C10 | 0.134 (3) | 0.0452 (13) | 0.106 (2) | −0.0082 (16) | 0.096 (2) | −0.0102 (14) |
C11 | 0.099 (2) | 0.0547 (15) | 0.0890 (18) | 0.0175 (14) | 0.0713 (17) | 0.0124 (13) |
S1—C16 | 1.686 (3) | C1—C3 | 1.521 (3) |
S1—C13 | 1.708 (2) | C12—C11 | 1.394 (4) |
O1—C1 | 1.407 (2) | C12—H12 | 0.9300 |
O1—C4 | 1.425 (3) | C3—C5 | 1.504 (3) |
O2—C2 | 1.400 (2) | C3—H3 | 0.9800 |
O2—C6 | 1.424 (3) | C16—C15 | 1.324 (5) |
C2—C13 | 1.487 (3) | C16—H16 | 0.9300 |
C2—C3 | 1.518 (3) | C5—H5C | 0.9600 |
C2—C1 | 1.529 (3) | C5—H5B | 0.9600 |
C14—C13 | 1.428 (3) | C5—H5A | 0.9600 |
C14—C15 | 1.441 (3) | C6—H6C | 0.9600 |
C14—H14 | 0.9300 | C6—H6A | 0.9600 |
C7—C8 | 1.389 (3) | C6—H6B | 0.9600 |
C7—C12 | 1.389 (3) | C9—C10 | 1.378 (5) |
C7—C1 | 1.490 (3) | C9—H9 | 0.9300 |
C8—C9 | 1.384 (4) | C15—H15 | 0.9300 |
C8—H8 | 0.9300 | C10—C11 | 1.369 (5) |
C4—H4B | 0.9600 | C10—H10 | 0.9300 |
C4—H4A | 0.9600 | C11—H11 | 0.9300 |
C4—H4C | 0.9600 | ||
C16—S1—C13 | 92.92 (13) | C11—C12—H12 | 119.7 |
C1—O1—C4 | 112.78 (17) | C5—C3—C2 | 121.32 (19) |
C2—O2—C6 | 113.11 (18) | C5—C3—C1 | 122.9 (2) |
O2—C2—C13 | 113.14 (17) | C2—C3—C1 | 60.40 (13) |
O2—C2—C3 | 113.99 (17) | C5—C3—H3 | 114.0 |
C13—C2—C3 | 118.79 (17) | C2—C3—H3 | 114.0 |
O2—C2—C1 | 116.28 (16) | C1—C3—H3 | 114.0 |
C13—C2—C1 | 124.24 (18) | C15—C16—S1 | 112.6 (2) |
C3—C2—C1 | 59.91 (13) | C15—C16—H16 | 123.7 |
C13—C14—C15 | 108.7 (2) | S1—C16—H16 | 123.7 |
C13—C14—H14 | 125.6 | C3—C5—H5C | 109.5 |
C15—C14—H14 | 125.6 | C3—C5—H5B | 109.5 |
C14—C13—C2 | 131.81 (19) | H5C—C5—H5B | 109.5 |
C14—C13—S1 | 110.92 (15) | C3—C5—H5A | 109.5 |
C2—C13—S1 | 116.98 (16) | H5C—C5—H5A | 109.5 |
C8—C7—C12 | 118.8 (2) | H5B—C5—H5A | 109.5 |
C8—C7—C1 | 121.7 (2) | O2—C6—H6C | 109.5 |
C12—C7—C1 | 119.55 (19) | O2—C6—H6A | 109.5 |
C9—C8—C7 | 120.3 (3) | H6C—C6—H6A | 109.5 |
C9—C8—H8 | 119.9 | O2—C6—H6B | 109.5 |
C7—C8—H8 | 119.9 | H6C—C6—H6B | 109.5 |
O1—C4—H4B | 109.5 | H6A—C6—H6B | 109.5 |
O1—C4—H4A | 109.5 | C10—C9—C8 | 120.4 (3) |
H4B—C4—H4A | 109.5 | C10—C9—H9 | 119.8 |
O1—C4—H4C | 109.5 | C8—C9—H9 | 119.8 |
H4B—C4—H4C | 109.5 | C16—C15—C14 | 114.8 (3) |
H4A—C4—H4C | 109.5 | C16—C15—H15 | 122.6 |
O1—C1—C7 | 114.01 (17) | C14—C15—H15 | 122.6 |
O1—C1—C3 | 116.44 (17) | C11—C10—C9 | 120.1 (3) |
C7—C1—C3 | 121.67 (17) | C11—C10—H10 | 119.9 |
O1—C1—C2 | 111.72 (16) | C9—C10—H10 | 119.9 |
C7—C1—C2 | 122.67 (16) | C10—C11—C12 | 119.9 (3) |
C3—C1—C2 | 59.69 (13) | C10—C11—H11 | 120.1 |
C7—C12—C11 | 120.6 (2) | C12—C11—H11 | 120.1 |
C7—C12—H12 | 119.7 | ||
C6—O2—C2—C13 | 73.1 (2) | C3—C2—C1—O1 | 108.80 (19) |
C6—O2—C2—C3 | −147.1 (2) | O2—C2—C1—C7 | 145.90 (19) |
C6—O2—C2—C1 | −80.2 (2) | C13—C2—C1—C7 | −4.1 (3) |
C15—C14—C13—C2 | −175.9 (2) | C3—C2—C1—C7 | −110.3 (2) |
C15—C14—C13—S1 | −2.4 (3) | O2—C2—C1—C3 | −103.76 (19) |
O2—C2—C13—C14 | −153.1 (2) | C13—C2—C1—C3 | 106.2 (2) |
C3—C2—C13—C14 | 69.2 (3) | C8—C7—C12—C11 | −0.6 (3) |
C1—C2—C13—C14 | −2.2 (3) | C1—C7—C12—C11 | −179.0 (2) |
O2—C2—C13—S1 | 33.7 (2) | O2—C2—C3—C5 | −5.1 (3) |
C3—C2—C13—S1 | −103.9 (2) | C13—C2—C3—C5 | 132.3 (2) |
C1—C2—C13—S1 | −175.39 (15) | C1—C2—C3—C5 | −112.6 (2) |
C16—S1—C13—C14 | 1.88 (18) | O2—C2—C3—C1 | 107.59 (19) |
C16—S1—C13—C2 | 176.44 (17) | C13—C2—C3—C1 | −115.1 (2) |
C12—C7—C8—C9 | 0.8 (3) | O1—C1—C3—C5 | 9.3 (3) |
C1—C7—C8—C9 | 179.2 (2) | C7—C1—C3—C5 | −137.9 (2) |
C4—O1—C1—C7 | 62.3 (2) | C2—C1—C3—C5 | 110.2 (2) |
C4—O1—C1—C3 | −87.4 (2) | O1—C1—C3—C2 | −100.84 (19) |
C4—O1—C1—C2 | −153.32 (19) | C7—C1—C3—C2 | 112.0 (2) |
C8—C7—C1—O1 | −118.9 (2) | C13—S1—C16—C15 | −0.8 (2) |
C12—C7—C1—O1 | 59.4 (2) | C7—C8—C9—C10 | −0.7 (4) |
C8—C7—C1—C3 | 29.0 (3) | S1—C16—C15—C14 | −0.5 (4) |
C12—C7—C1—C3 | −152.6 (2) | C13—C14—C15—C16 | 1.8 (4) |
C8—C7—C1—C2 | 101.0 (2) | C8—C9—C10—C11 | 0.3 (4) |
C12—C7—C1—C2 | −80.6 (3) | C9—C10—C11—C12 | −0.1 (4) |
O2—C2—C1—O1 | 5.0 (2) | C7—C12—C11—C10 | 0.3 (4) |
C13—C2—C1—O1 | −145.00 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
C16—H16···O2i | 0.93 | 2.55 | 3.469 (3) | 172 |
Symmetry code: (i) x, −y−1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C16H18O2S |
Mr | 274.36 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 12.9924 (3), 9.7194 (2), 14.7960 (3) |
β (°) | 128.395 (1) |
V (Å3) | 1464.37 (6) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 1.92 |
Crystal size (mm) | 0.56 × 0.35 × 0.28 |
Data collection | |
Diffractometer | Oxford Diffraction Nova diffractometer |
Absorption correction | Part of the refinement model (ΔF) (XABS2; Parkin et al., 1995) |
Tmin, Tmax | 0.330, 0.581 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7070, 2830, 2435 |
Rint | 0.021 |
(sin θ/λ)max (Å−1) | 0.626 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.055, 0.192, 1.16 |
No. of reflections | 2830 |
No. of parameters | 172 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.47, −0.52 |
Computer programs: CrysAlis CCD (Oxford Diffraction, 2006), CrysAlis RED (Oxford Diffraction, 2006), SIR92 (Altomare et al., 1994), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
C16—H16···O2i | 0.93 | 2.55 | 3.469 (3) | 172 |
Symmetry code: (i) x, −y−1/2, z+1/2. |
Acknowledgements
Financial support from the Spanish Ministerio de Educacion y Ciencia (MAT2006–01997 and 'Factoría de Cristalización' Consolider Ingenio 2010) and FEDER funding is acknowledged.
References
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Wessjohann, L. A., Brandt, W. & Thiemann, T. (2003). Chem. Rev. 103, 1625–1647. Web of Science CrossRef PubMed CAS Google Scholar
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The cyclopropane ring is a quite common subunit of natural products isolated from plants, fungi, and microorganisms (Wessjohann, et al. 2003). Many of these natural products show biological activity, and some of them have found applications as drugs or insecticides (de Meijere et al., 2003). Classical chemical synthesis of cyclopropane derivatives include the halomethyl-metal mediated cyclopropanation of olefins, the transition-metal-catalyzed carbene-transfer reaction from diazo compounds, and the nucleophilic-addition/ring-closing sequence (Lebel et al. 2003). A new method for the synthesis of cis-1,2-dimethoxycyclopropane through the cyclopropanation of lithium ketone enolates with Fischer carbene complex will be published elsewhere. The molecular structure of the title compound is shown in Fig. 1. There are no unusual bonding features. O atoms of the two methoxy groups are in cis position to each other and in trans positions with the C3 hydrogen atom, and point away from the phenyl and from thienyl rings on the cyclopropyl group, respectively. The molecular packing is dominated by the weak intermolecular interaction C16—H16 ··· O2 allowing the formation of zig-zag chains roughly parallel to the c crystallographic axis and perpendicular to the b axis.