organic compounds
2-[1-(2-Hydroxy-3-methoxybenzyl)-1H-benzimidazol-2-yl]-6-methoxyphenol methanol 1.13-solvate
aSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bKulliyyah of Science, International Islamic University Malaysia (IIUM), Jalan Istana, Bandar Indera Mahkota 25200 Kuantan, Pahang, Malaysia, and cX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
In the main molecule of the title compound, C22H20N2O4·1.13CH4O, the dihedral angles between the benzimidazole plane and the two benzene rings are 80.53 (10) and 82.76 (10)°. The solvent molecules are disordered between three positions, with refined occupancies of 0.506 (13), 0.373 (13) and 0.249 (5). The is stabilized by intermolecular O—H⋯O, O—H⋯N and C—H⋯O hydrogen bonds. The crystal studied was a twin [BASF ratio of 0.917 (1)/0.083 (1)].
Related literature
For related structures, see Al-Douh et al. (2006, 2009). For hydrogen-bond motifs, see Bernstein et al. (1995). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536809011192/cv2535sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809011192/cv2535Isup2.hkl
A 100-mL, three-necked, round-bottomed flask is equipped with a nitrogen inlet adapter, rubber septum, glass stopper, and a magnetic stirring bar. The flask is charged with 5 mL of dichloromethane and (608.61 mg, 0.004 mol) of o-vanillin, and then is cooled in an ice-water bath while a solution of (216.29 mg, 0.002 mol) of o-phenylenediamine in 5 mL of dichloromethane is added dropwise via syringe over 15 min. After 30 min, 10 g of anhydrous magnesium sulfate is added in one portion. The ice-water bath is removed, and the reaction mixture is stirred at room temperature for 2hr. The resulting solution is allowed to cool to room temperature and then is cooled in an ice-water bath for 2 hr. Filtration provides the light yellowish powder. The single crystals suitable for X-ray diffraction were obtained by evaporation of methanol and dichloromethane (7:3) solvent at room temperature.
All H atoms were geometrically positioned (C—H 0.93–0.97 Å, O—H 0.82 Å) and refined in a riding model approximation, with Uiso(H) = 1.2 or 1.5 (C, O). The methanol solvent molecules were treated as disordered over three positions with refined site-occupancies of 0.506 (13), 0.373 (13) and 0.249 (5) with SUMP command equal to 1.0 (1). The crystal studied was a twin with the refined BASF ratio of 0.917 (1)/0.083 (1). During the data collection, the temperature was controlled according to the literature procedure (Cosier & Glazer, 1986).
Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound, showing 50% probability displacement ellipsoids and the atomic numbering. The disordered methanol solvent molecules were omitted for clarity. Intramolecular hydrogen bonds are drawn as dashed lines. |
C22H20N2O4·1.13CH4O | F(000) = 873 |
Mr = 412.53 | Dx = 1.295 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 4846 reflections |
a = 7.2451 (1) Å | θ = 2.9–26.4° |
b = 11.1482 (2) Å | µ = 0.09 mm−1 |
c = 26.2046 (5) Å | T = 100 K |
β = 90.010 (1)° | Block, colourless |
V = 2116.54 (6) Å3 | 0.27 × 0.15 × 0.13 mm |
Z = 4 |
Bruker SMART APEXII CCD area-detector diffractometer | 3940 independent reflections |
Radiation source: fine-focus sealed tube | 3099 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.040 |
ϕ and ω scans | θmax = 25.5°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −8→8 |
Tmin = 0.976, Tmax = 0.988 | k = −12→13 |
18918 measured reflections | l = −31→28 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.050 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.122 | H-atom parameters constrained |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0415P)2 + 1.5448P] where P = (Fo2 + 2Fc2)/3 |
3940 reflections | (Δ/σ)max < 0.001 |
317 parameters | Δρmax = 0.28 e Å−3 |
1 restraint | Δρmin = −0.23 e Å−3 |
C22H20N2O4·1.13CH4O | V = 2116.54 (6) Å3 |
Mr = 412.53 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 7.2451 (1) Å | µ = 0.09 mm−1 |
b = 11.1482 (2) Å | T = 100 K |
c = 26.2046 (5) Å | 0.27 × 0.15 × 0.13 mm |
β = 90.010 (1)° |
Bruker SMART APEXII CCD area-detector diffractometer | 3940 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 3099 reflections with I > 2σ(I) |
Tmin = 0.976, Tmax = 0.988 | Rint = 0.040 |
18918 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | 1 restraint |
wR(F2) = 0.122 | H-atom parameters constrained |
S = 1.09 | Δρmax = 0.28 e Å−3 |
3940 reflections | Δρmin = −0.23 e Å−3 |
317 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.0363 (2) | 0.18739 (17) | 0.00815 (6) | 0.0272 (4) | |
H1 | 0.0385 | 0.1891 | −0.0231 | 0.041* | |
O2 | 0.3146 (2) | 0.15819 (18) | −0.05634 (6) | 0.0346 (5) | |
O3 | 0.0521 (3) | −0.24674 (15) | 0.09905 (6) | 0.0282 (4) | |
H3 | 0.0664 | −0.3196 | 0.0971 | 0.042* | |
O4 | 0.2424 (3) | −0.39894 (16) | 0.15953 (8) | 0.0437 (6) | |
N1 | 0.0259 (3) | 0.31698 (18) | 0.13518 (7) | 0.0220 (5) | |
N2 | −0.0044 (3) | 0.11719 (17) | 0.13178 (7) | 0.0196 (5) | |
C1 | −0.1122 (3) | 0.2812 (2) | 0.16904 (9) | 0.0199 (5) | |
C2 | −0.2243 (3) | 0.3492 (2) | 0.20124 (9) | 0.0237 (6) | |
H2A | −0.2161 | 0.4324 | 0.2019 | 0.028* | |
C3 | −0.3483 (3) | 0.2886 (2) | 0.23220 (9) | 0.0253 (6) | |
H3A | −0.4232 | 0.3321 | 0.2543 | 0.030* | |
C4 | −0.3634 (4) | 0.1640 (2) | 0.23092 (9) | 0.0255 (6) | |
H4A | −0.4479 | 0.1264 | 0.2523 | 0.031* | |
C5 | −0.2560 (3) | 0.0947 (2) | 0.19875 (9) | 0.0229 (6) | |
H5A | −0.2666 | 0.0116 | 0.1977 | 0.027* | |
C6 | −0.1313 (3) | 0.1562 (2) | 0.16799 (8) | 0.0195 (5) | |
C7 | 0.0860 (3) | 0.2171 (2) | 0.11421 (9) | 0.0198 (5) | |
C8 | 0.2427 (3) | 0.2062 (2) | 0.07811 (9) | 0.0196 (5) | |
C9 | 0.2130 (3) | 0.1894 (2) | 0.02649 (9) | 0.0202 (5) | |
C10 | 0.3634 (4) | 0.1738 (2) | −0.00633 (9) | 0.0233 (6) | |
C11 | 0.5417 (4) | 0.1767 (2) | 0.01214 (10) | 0.0289 (6) | |
H11A | 0.6411 | 0.1665 | −0.0099 | 0.035* | |
C12 | 0.5715 (4) | 0.1951 (3) | 0.06398 (10) | 0.0324 (7) | |
H12A | 0.6913 | 0.1981 | 0.0766 | 0.039* | |
C13 | 0.4233 (3) | 0.2090 (2) | 0.09689 (10) | 0.0281 (6) | |
H13A | 0.4441 | 0.2203 | 0.1316 | 0.034* | |
C14 | 0.0209 (3) | −0.0061 (2) | 0.11471 (9) | 0.0203 (5) | |
H14A | 0.0840 | −0.0054 | 0.0821 | 0.024* | |
H14B | −0.0994 | −0.0423 | 0.1095 | 0.024* | |
C15 | 0.1298 (3) | −0.0828 (2) | 0.15162 (9) | 0.0193 (5) | |
C16 | 0.1386 (3) | −0.2048 (2) | 0.14165 (9) | 0.0210 (5) | |
C17 | 0.2424 (4) | −0.2802 (2) | 0.17332 (10) | 0.0256 (6) | |
C18 | 0.3361 (4) | −0.2327 (2) | 0.21462 (10) | 0.0267 (6) | |
H18A | 0.4048 | −0.2825 | 0.2358 | 0.032* | |
C19 | 0.3274 (3) | −0.1111 (2) | 0.22427 (10) | 0.0263 (6) | |
H19A | 0.3906 | −0.0793 | 0.2520 | 0.032* | |
C20 | 0.2259 (3) | −0.0364 (2) | 0.19313 (9) | 0.0241 (6) | |
H20A | 0.2217 | 0.0454 | 0.1999 | 0.029* | |
C21 | 0.4624 (5) | 0.1568 (4) | −0.09260 (11) | 0.0588 (11) | |
H21A | 0.4126 | 0.1590 | −0.1265 | 0.088* | |
H21B | 0.5337 | 0.0849 | −0.0883 | 0.088* | |
H21C | 0.5400 | 0.2255 | −0.0873 | 0.088* | |
C22 | 0.4019 (4) | −0.4674 (3) | 0.17089 (12) | 0.0399 (7) | |
H22A | 0.5094 | −0.4261 | 0.1587 | 0.060* | |
H22B | 0.3931 | −0.5443 | 0.1546 | 0.060* | |
H22C | 0.4112 | −0.4783 | 0.2071 | 0.060* | |
O5A | 1.0245 (11) | 0.5263 (4) | 0.0733 (2) | 0.034 (2) | 0.506 (13) |
H5A1 | 1.0285 | 0.4805 | 0.0978 | 0.051* | 0.506 (13) |
C23A | 0.8593 (19) | 0.5039 (7) | 0.0444 (6) | 0.082 (5) | 0.506 (13) |
H23A | 0.8527 | 0.4203 | 0.0358 | 0.123* | 0.506 (13) |
H23B | 0.8616 | 0.5507 | 0.0136 | 0.123* | 0.506 (13) |
H23C | 0.7534 | 0.5257 | 0.0643 | 0.123* | 0.506 (13) |
O5B | 0.9164 (17) | 0.5416 (6) | 0.0975 (4) | 0.048 (4) | 0.373 (13) |
H5B | 0.9997 | 0.4977 | 0.0874 | 0.072* | 0.373 (13) |
C23B | 0.739 (3) | 0.5162 (11) | 0.0664 (4) | 0.064 (4) | 0.373 (13) |
H23D | 0.7633 | 0.4547 | 0.0417 | 0.096* | 0.373 (13) |
H23E | 0.7007 | 0.5881 | 0.0493 | 0.096* | 0.373 (13) |
H23F | 0.6429 | 0.4900 | 0.0891 | 0.096* | 0.373 (13) |
O5C | 0.718 (2) | 0.4931 (11) | 0.0088 (4) | 0.082 (4) | 0.249 (5) |
H5C | 0.7138 | 0.4829 | −0.0222 | 0.123* | 0.249 (5) |
C23C | 0.537 (3) | 0.5098 (15) | 0.0278 (8) | 0.092 (7) | 0.249 (5) |
H23G | 0.4542 | 0.4569 | 0.0102 | 0.139* | 0.249 (5) |
H23H | 0.5401 | 0.4894 | 0.0633 | 0.139* | 0.249 (5) |
H23I | 0.4957 | 0.5911 | 0.0239 | 0.139* | 0.249 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0169 (9) | 0.0456 (11) | 0.0192 (9) | −0.0011 (8) | 0.0000 (7) | −0.0004 (8) |
O2 | 0.0215 (10) | 0.0621 (13) | 0.0202 (9) | −0.0080 (9) | 0.0070 (8) | −0.0083 (9) |
O3 | 0.0329 (10) | 0.0216 (9) | 0.0302 (10) | 0.0024 (8) | −0.0068 (8) | −0.0033 (7) |
O4 | 0.0460 (13) | 0.0217 (10) | 0.0633 (14) | 0.0073 (9) | −0.0233 (11) | −0.0015 (9) |
N1 | 0.0227 (11) | 0.0222 (11) | 0.0212 (10) | −0.0008 (9) | 0.0010 (9) | 0.0005 (9) |
N2 | 0.0197 (11) | 0.0203 (11) | 0.0188 (10) | 0.0011 (9) | 0.0016 (9) | 0.0001 (8) |
C1 | 0.0194 (12) | 0.0224 (13) | 0.0179 (11) | 0.0008 (10) | −0.0033 (10) | −0.0011 (10) |
C2 | 0.0222 (13) | 0.0258 (14) | 0.0231 (13) | 0.0033 (11) | −0.0044 (11) | −0.0039 (11) |
C3 | 0.0197 (13) | 0.0343 (15) | 0.0220 (12) | 0.0064 (12) | 0.0010 (11) | −0.0048 (11) |
C4 | 0.0207 (13) | 0.0348 (15) | 0.0210 (12) | −0.0006 (12) | 0.0027 (11) | 0.0019 (11) |
C5 | 0.0234 (13) | 0.0231 (13) | 0.0220 (12) | 0.0017 (11) | 0.0002 (11) | 0.0036 (10) |
C6 | 0.0175 (12) | 0.0248 (13) | 0.0163 (11) | 0.0047 (11) | −0.0010 (10) | −0.0020 (10) |
C7 | 0.0201 (13) | 0.0212 (13) | 0.0182 (11) | 0.0015 (11) | −0.0030 (10) | 0.0011 (10) |
C8 | 0.0196 (12) | 0.0187 (12) | 0.0204 (12) | 0.0006 (10) | 0.0020 (10) | 0.0009 (10) |
C9 | 0.0157 (12) | 0.0203 (13) | 0.0246 (12) | 0.0003 (10) | 0.0002 (10) | 0.0002 (10) |
C10 | 0.0233 (13) | 0.0258 (14) | 0.0208 (12) | −0.0035 (11) | 0.0013 (11) | −0.0023 (10) |
C11 | 0.0192 (13) | 0.0366 (16) | 0.0310 (14) | 0.0028 (12) | 0.0064 (11) | −0.0009 (12) |
C12 | 0.0162 (13) | 0.0496 (18) | 0.0314 (15) | 0.0010 (13) | −0.0038 (12) | 0.0039 (13) |
C13 | 0.0231 (14) | 0.0394 (16) | 0.0219 (13) | 0.0032 (12) | −0.0023 (11) | 0.0013 (12) |
C14 | 0.0204 (12) | 0.0216 (13) | 0.0188 (12) | 0.0004 (11) | 0.0014 (10) | −0.0003 (10) |
C15 | 0.0154 (12) | 0.0232 (13) | 0.0194 (12) | −0.0001 (10) | 0.0051 (10) | 0.0002 (10) |
C16 | 0.0170 (12) | 0.0248 (13) | 0.0212 (12) | −0.0005 (11) | 0.0032 (10) | 0.0004 (10) |
C17 | 0.0237 (13) | 0.0208 (13) | 0.0324 (14) | −0.0007 (11) | −0.0003 (12) | 0.0039 (11) |
C18 | 0.0228 (14) | 0.0280 (15) | 0.0292 (14) | 0.0028 (12) | −0.0023 (12) | 0.0102 (11) |
C19 | 0.0222 (14) | 0.0315 (15) | 0.0253 (13) | −0.0009 (12) | −0.0042 (11) | 0.0013 (11) |
C20 | 0.0215 (13) | 0.0253 (14) | 0.0254 (13) | −0.0003 (11) | 0.0016 (11) | −0.0013 (11) |
C21 | 0.0388 (19) | 0.110 (3) | 0.0275 (16) | −0.026 (2) | 0.0169 (15) | −0.0232 (18) |
C22 | 0.0440 (18) | 0.0312 (16) | 0.0445 (17) | 0.0119 (14) | 0.0048 (15) | 0.0037 (13) |
O5A | 0.056 (4) | 0.016 (2) | 0.030 (3) | −0.007 (2) | −0.017 (3) | 0.0041 (17) |
C23A | 0.108 (9) | 0.024 (4) | 0.114 (10) | −0.011 (5) | −0.075 (8) | 0.012 (5) |
O5B | 0.064 (7) | 0.024 (4) | 0.056 (6) | −0.014 (4) | −0.034 (6) | 0.011 (3) |
C23B | 0.109 (12) | 0.044 (6) | 0.039 (6) | −0.029 (7) | 0.002 (7) | −0.010 (5) |
O5C | 0.125 (12) | 0.067 (8) | 0.053 (7) | −0.011 (8) | −0.017 (8) | 0.022 (6) |
C23C | 0.090 (15) | 0.050 (10) | 0.137 (18) | −0.013 (10) | −0.052 (14) | 0.043 (11) |
O1—C9 | 1.367 (3) | C14—H14A | 0.9700 |
O1—H1 | 0.8200 | C14—H14B | 0.9700 |
O2—C10 | 1.368 (3) | C15—C16 | 1.387 (3) |
O2—C21 | 1.432 (3) | C15—C20 | 1.391 (3) |
O3—C16 | 1.363 (3) | C16—C17 | 1.400 (4) |
O3—H3 | 0.8200 | C17—C18 | 1.383 (4) |
O4—C17 | 1.372 (3) | C18—C19 | 1.380 (4) |
O4—C22 | 1.416 (3) | C18—H18A | 0.9300 |
N1—C7 | 1.316 (3) | C19—C20 | 1.379 (4) |
N1—C1 | 1.396 (3) | C19—H19A | 0.9300 |
N2—C7 | 1.371 (3) | C20—H20A | 0.9300 |
N2—C6 | 1.391 (3) | C21—H21A | 0.9600 |
N2—C14 | 1.457 (3) | C21—H21B | 0.9600 |
C1—C2 | 1.395 (3) | C21—H21C | 0.9600 |
C1—C6 | 1.401 (3) | C22—H22A | 0.9600 |
C2—C3 | 1.386 (4) | C22—H22B | 0.9600 |
C2—H2A | 0.9300 | C22—H22C | 0.9600 |
C3—C4 | 1.394 (4) | O5A—C23A | 1.439 (9) |
C3—H3A | 0.9300 | O5A—H5A1 | 0.8200 |
C4—C5 | 1.383 (4) | C23A—H23A | 0.9600 |
C4—H4A | 0.9300 | C23A—H23B | 0.9600 |
C5—C6 | 1.392 (3) | C23A—H23C | 0.9600 |
C5—H5A | 0.9300 | O5B—C23B | 1.547 (16) |
C7—C8 | 1.483 (3) | O5B—H5B | 0.8200 |
C8—C9 | 1.382 (3) | C23B—H23D | 0.9600 |
C8—C13 | 1.398 (4) | C23B—H23E | 0.9600 |
C9—C10 | 1.400 (3) | C23B—H23F | 0.9600 |
C10—C11 | 1.380 (4) | O5C—C23C | 1.41 (2) |
C11—C12 | 1.390 (4) | O5C—H5C | 0.8200 |
C11—H11A | 0.9300 | C23C—C23Ci | 1.57 (4) |
C12—C13 | 1.386 (4) | C23C—H23G | 0.9600 |
C12—H12A | 0.9300 | C23C—H23H | 0.9597 |
C13—H13A | 0.9300 | C23C—H23I | 0.9602 |
C14—C15 | 1.513 (3) | ||
C9—O1—H1 | 109.5 | C16—C15—C14 | 117.3 (2) |
C10—O2—C21 | 116.3 (2) | C20—C15—C14 | 123.4 (2) |
C16—O3—H3 | 109.5 | O3—C16—C15 | 118.0 (2) |
C17—O4—C22 | 117.7 (2) | O3—C16—C17 | 121.8 (2) |
C7—N1—C1 | 105.1 (2) | C15—C16—C17 | 120.2 (2) |
C7—N2—C6 | 106.90 (19) | O4—C17—C18 | 125.2 (2) |
C7—N2—C14 | 127.1 (2) | O4—C17—C16 | 115.0 (2) |
C6—N2—C14 | 126.0 (2) | C18—C17—C16 | 119.8 (2) |
C2—C1—N1 | 130.3 (2) | C19—C18—C17 | 119.8 (2) |
C2—C1—C6 | 119.7 (2) | C19—C18—H18A | 120.1 |
N1—C1—C6 | 110.0 (2) | C17—C18—H18A | 120.1 |
C3—C2—C1 | 117.8 (2) | C20—C19—C18 | 120.6 (2) |
C3—C2—H2A | 121.1 | C20—C19—H19A | 119.7 |
C1—C2—H2A | 121.1 | C18—C19—H19A | 119.7 |
C2—C3—C4 | 121.5 (2) | C19—C20—C15 | 120.4 (2) |
C2—C3—H3A | 119.3 | C19—C20—H20A | 119.8 |
C4—C3—H3A | 119.3 | C15—C20—H20A | 119.8 |
C5—C4—C3 | 121.8 (2) | O2—C21—H21A | 109.5 |
C5—C4—H4A | 119.1 | O2—C21—H21B | 109.5 |
C3—C4—H4A | 119.1 | H21A—C21—H21B | 109.5 |
C4—C5—C6 | 116.3 (2) | O2—C21—H21C | 109.5 |
C4—C5—H5A | 121.8 | H21A—C21—H21C | 109.5 |
C6—C5—H5A | 121.8 | H21B—C21—H21C | 109.5 |
N2—C6—C5 | 132.1 (2) | O4—C22—H22A | 109.5 |
N2—C6—C1 | 105.0 (2) | O4—C22—H22B | 109.5 |
C5—C6—C1 | 122.9 (2) | H22A—C22—H22B | 109.5 |
N1—C7—N2 | 112.9 (2) | O4—C22—H22C | 109.5 |
N1—C7—C8 | 126.1 (2) | H22A—C22—H22C | 109.5 |
N2—C7—C8 | 120.9 (2) | H22B—C22—H22C | 109.5 |
C9—C8—C13 | 119.5 (2) | O5A—C23A—H23A | 109.5 |
C9—C8—C7 | 121.1 (2) | O5A—C23A—H23B | 109.5 |
C13—C8—C7 | 119.4 (2) | H23A—C23A—H23B | 109.5 |
O1—C9—C8 | 119.5 (2) | O5A—C23A—H23C | 109.5 |
O1—C9—C10 | 120.7 (2) | H23A—C23A—H23C | 109.5 |
C8—C9—C10 | 119.8 (2) | H23B—C23A—H23C | 109.5 |
O2—C10—C11 | 125.5 (2) | C23B—O5B—H5B | 109.5 |
O2—C10—C9 | 113.8 (2) | O5B—C23B—H23D | 109.5 |
C11—C10—C9 | 120.7 (2) | O5B—C23B—H23E | 109.5 |
C10—C11—C12 | 119.4 (2) | H23D—C23B—H23E | 109.5 |
C10—C11—H11A | 120.3 | O5B—C23B—H23F | 109.5 |
C12—C11—H11A | 120.3 | H23D—C23B—H23F | 109.5 |
C13—C12—C11 | 120.3 (2) | H23E—C23B—H23F | 109.5 |
C13—C12—H12A | 119.8 | O5B—C23B—H23H | 151.5 |
C11—C12—H12A | 119.8 | H23D—C23B—H23H | 89.8 |
C12—C13—C8 | 120.2 (2) | H23E—C23B—H23H | 82.0 |
C12—C13—H13A | 119.9 | O5C—C23C—C23Ci | 88 (2) |
C8—C13—H13A | 119.9 | O5C—C23C—H23G | 109.3 |
N2—C14—C15 | 113.7 (2) | O5C—C23C—H23H | 106.9 |
N2—C14—H14A | 108.8 | C23Ci—C23C—H23H | 151.2 |
C15—C14—H14A | 108.8 | H23G—C23C—H23H | 109.5 |
N2—C14—H14B | 108.8 | O5C—C23C—H23I | 112.2 |
C15—C14—H14B | 108.8 | C23Ci—C23C—H23I | 85.8 |
H14A—C14—H14B | 107.7 | H23G—C23C—H23I | 109.5 |
C16—C15—C20 | 119.2 (2) | H23H—C23C—H23I | 109.5 |
C7—N1—C1—C2 | −179.5 (2) | C21—O2—C10—C9 | 172.4 (3) |
C7—N1—C1—C6 | 0.7 (3) | O1—C9—C10—O2 | 0.6 (3) |
N1—C1—C2—C3 | −178.3 (2) | C8—C9—C10—O2 | −180.0 (2) |
C6—C1—C2—C3 | 1.6 (3) | O1—C9—C10—C11 | 179.5 (2) |
C1—C2—C3—C4 | −0.9 (4) | C8—C9—C10—C11 | −1.0 (4) |
C2—C3—C4—C5 | −0.1 (4) | O2—C10—C11—C12 | 179.0 (3) |
C3—C4—C5—C6 | 0.4 (4) | C9—C10—C11—C12 | 0.2 (4) |
C7—N2—C6—C5 | −178.4 (3) | C10—C11—C12—C13 | 0.7 (4) |
C14—N2—C6—C5 | 3.9 (4) | C11—C12—C13—C8 | −0.8 (4) |
C7—N2—C6—C1 | 1.5 (2) | C9—C8—C13—C12 | 0.0 (4) |
C14—N2—C6—C1 | −176.2 (2) | C7—C8—C13—C12 | 177.9 (2) |
C4—C5—C6—N2 | −179.8 (2) | C7—N2—C14—C15 | 104.5 (3) |
C4—C5—C6—C1 | 0.3 (4) | C6—N2—C14—C15 | −78.2 (3) |
C2—C1—C6—N2 | 178.7 (2) | N2—C14—C15—C16 | 171.5 (2) |
N1—C1—C6—N2 | −1.4 (3) | N2—C14—C15—C20 | −11.3 (3) |
C2—C1—C6—C5 | −1.4 (4) | C20—C15—C16—O3 | −176.2 (2) |
N1—C1—C6—C5 | 178.5 (2) | C14—C15—C16—O3 | 1.2 (3) |
C1—N1—C7—N2 | 0.3 (3) | C20—C15—C16—C17 | 0.4 (3) |
C1—N1—C7—C8 | −175.3 (2) | C14—C15—C16—C17 | 177.8 (2) |
C6—N2—C7—N1 | −1.2 (3) | C22—O4—C17—C18 | −30.2 (4) |
C14—N2—C7—N1 | 176.5 (2) | C22—O4—C17—C16 | 149.2 (2) |
C6—N2—C7—C8 | 174.7 (2) | O3—C16—C17—O4 | −3.0 (3) |
C14—N2—C7—C8 | −7.6 (4) | C15—C16—C17—O4 | −179.5 (2) |
N1—C7—C8—C9 | −104.0 (3) | O3—C16—C17—C18 | 176.5 (2) |
N2—C7—C8—C9 | 80.6 (3) | C15—C16—C17—C18 | 0.0 (4) |
N1—C7—C8—C13 | 78.1 (3) | O4—C17—C18—C19 | 179.2 (2) |
N2—C7—C8—C13 | −97.3 (3) | C16—C17—C18—C19 | −0.3 (4) |
C13—C8—C9—O1 | −179.6 (2) | C17—C18—C19—C20 | 0.1 (4) |
C7—C8—C9—O1 | 2.5 (4) | C18—C19—C20—C15 | 0.4 (4) |
C13—C8—C9—C10 | 0.9 (4) | C16—C15—C20—C19 | −0.6 (3) |
C7—C8—C9—C10 | −177.0 (2) | C14—C15—C20—C19 | −177.8 (2) |
C21—O2—C10—C11 | −6.5 (4) |
Symmetry code: (i) −x+1, −y+1, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O2 | 0.82 | 2.21 | 2.651 (2) | 114 |
O3—H3···O4 | 0.82 | 2.25 | 2.700 (3) | 114 |
O3—H3···O5Aii | 0.82 | 1.85 | 2.626 (5) | 157 |
O5A—H5A1···N1iii | 0.82 | 2.07 | 2.842 (5) | 157 |
O1—H1···O3iv | 0.82 | 2.19 | 2.956 (2) | 155 |
C14—H14B···O2iv | 0.97 | 2.46 | 3.335 (3) | 150 |
C23A—H23B···O5Av | 0.96 | 2.57 | 3.215 (16) | 125 |
Symmetry codes: (ii) x−1, y−1, z; (iii) x+1, y, z; (iv) −x, −y, −z; (v) −x+2, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C22H20N2O4·1.13CH4O |
Mr | 412.53 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 100 |
a, b, c (Å) | 7.2451 (1), 11.1482 (2), 26.2046 (5) |
β (°) | 90.010 (1) |
V (Å3) | 2116.54 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.27 × 0.15 × 0.13 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.976, 0.988 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 18918, 3940, 3099 |
Rint | 0.040 |
(sin θ/λ)max (Å−1) | 0.606 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.122, 1.09 |
No. of reflections | 3940 |
No. of parameters | 317 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.28, −0.23 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O2 | 0.8200 | 2.2100 | 2.651 (2) | 114.00 |
O3—H3···O4 | 0.8200 | 2.2500 | 2.700 (3) | 114.00 |
O3—H3···O5Ai | 0.8200 | 1.8500 | 2.626 (5) | 157.00 |
O5A—H5A1···N1ii | 0.8200 | 2.0700 | 2.842 (5) | 157.00 |
O1—H1···O3iii | 0.8200 | 2.1900 | 2.956 (2) | 155.00 |
C14—H14B···O2iii | 0.9700 | 2.4600 | 3.335 (3) | 150.00 |
C23A—H23B···O5Aiv | 0.9600 | 2.5700 | 3.215 (16) | 125.00 |
Symmetry codes: (i) x−1, y−1, z; (ii) x+1, y, z; (iii) −x, −y, −z; (iv) −x+2, −y+1, −z. |
Footnotes
‡Additional correspondence author, e-mail: ohasnah@usm.my.
Acknowledgements
The authors thank the Malaysian government and Universiti Sains Malaysia (USM) for an FRGS grant (No. 304/PKIMIA/638122) to conduct this work. M. H. Al-Douh thanks the Yemen government and Hadhramout University of Science and Technology (HUST) for financial scholarship support. HKF and RK thank the Malaysian government and Universiti Sains Malaysia for the Science Fund grant No. 305/PFIZIK/613312. RK thanks Universiti Sains Malaysia for a post-doctoral research fellowship. HKF also thanks Universiti Sains Malaysia for the Research University Golden Goose grant No. 1001/PFIZIK/811012.
References
Al-Douh, M. H., Osman, H., Hamid, S. A., Kia, R. & Fun, H.-K. (2009). Acta Cryst. E65, o913–o914. Web of Science CSD CrossRef IUCr Journals Google Scholar
Al-Douh, M. H., Hamid, S. A., Osman, H., Ng, S.-L. & Fun, H.-K. (2006). Acta Cryst. E62, o3954–o3956. Web of Science CSD CrossRef IUCr Journals Google Scholar
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
In continuation of our crystallographic study of benzimidazole derivatives (Al-Douh et al., 2006, 2009), we present here the crystal structure of the title compound, (I).
In the title compound (Fig. 1), intramolecular O—H···O hydrogen bonds (Table 1) generate five-membered rings with S(5) ring motifs (Bernstein et al., 1995). The dihedral angle between the two outer benzene rings is 75.18 (12)°. The benzimidazole plane and two outer benzene rings form dihedral angles 80.53 (10) and 82.76 (10)°, respectively. There are short intermolecular contacts C16···C21vi of 3.209 (4) Å and C17···C21vi of 3.308 (4) Å [symmetry code: (vi) 1 - x, -y, -z].
The crystal structure is stabilized by intermolecular O—H···O, O—H···N and C—H···O hydrogen bonds (Table 1).