organic compounds
2-(1H-Benzoimidazol-2-yl)-6-ethoxyphenol
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bDepartment of Chemistry, School of Science, Payame Noor University (PNU), Ardakan, Yazd, Iran
*Correspondence e-mail: hkfun@usm.my
The title Schiff base compound, C15H14N2O2, consists of two crystallographically independent molecules, A and B. Molecule A is almost planar, whereas molecule B is slightly twisted, the dihedral angles between the benzimidazole group and the benzene rings being 2.65 (12) and 13.17 (15)°, respectively. The methyl group of molecule B is disordered over two positions, with a refined site-occupancy ratio of 0.581 (7):0.419 (7). In each molecule, intramolecular O—H⋯N hydrogen bonds generate S(6) ring motifs. In the both types of molecules are linked via intermolecular bifurcated N—H⋯O hydrogen bonds into one-dimensional extended chains along [010] and form R12(5) ring motifs. The is further stabilized by intermolecular C—H⋯π and π–π interactions [centroid–centroid distances = 3.4758 (16)–3.596 (2) Å].
Related literature
For hydrogen-bond motifs, see: Bernstein et al. (1995). For benzimidazole chemistry, reaction mechanisms and bioactivity, see, for example: Latif et al. (1983); Craigo et al. (1999); Gudmundsson et al. (2000); Trivedi et al.(2006); Kim et al. (1996); Ramla et al. (2006). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536809008071/lh2781sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809008071/lh2781Isup2.hkl
An ethanolic solution (50 ml) of 3-ethoxy-salicylaldehyde (2 mmol, 332 mg) was added to 1,2-phenylenediamine (1 mmol, 217 mg). The mixture was refluxed for 2 h, and cooled to room temperature. The resulting colourless powder was filtered, washed with cooled ethanol and dried in vacuo. Single crystals suitable for X-ray diffraction were obtained from an methanol solution at room temperature.
O1A, O1B and N-bound hydrogen atoms were located from the diffrence Fourier map and refined freely. The rest of the hydrogen atoms were positioned geometrically with a riding model approximation with C—H = 0.93-0.97 Å and Uiso(H) = 1.2 or 1.5 (C & O). A rotating group model was used for methyl group.
Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound with atom labels and 50% probability ellipsoids for non-H atoms. Intra- and intermolecular hydrogen bonds are shown as dashed lines. The open bond indicates the minor component of disorder. | |
Fig. 2. Part of the crystal structure of the title compound with hydrogen bonds shown as dashed lines. The disorder is not shown and only H atoms involved in hydrogen bonds are drawn. |
C15H14N2O2 | F(000) = 2144 |
Mr = 254.28 | Dx = 1.352 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 9961 reflections |
a = 22.5305 (4) Å | θ = 2.5–32.2° |
b = 12.0113 (2) Å | µ = 0.09 mm−1 |
c = 21.4241 (3) Å | T = 100 K |
β = 120.449 (1)° | Block, yellow |
V = 4998.17 (14) Å3 | 0.38 × 0.23 × 0.18 mm |
Z = 16 |
Bruker SMART APEXII CCD area-detector diffractometer | 5171 independent reflections |
Radiation source: fine-focus sealed tube | 4238 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.043 |
ϕ and ω scans | θmax = 26.5°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −28→28 |
Tmin = 0.966, Tmax = 0.984 | k = −14→15 |
49947 measured reflections | l = −26→26 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.067 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.151 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.19 | w = 1/[σ2(Fo2) + (0.022P)2 + 16.3221P] where P = (Fo2 + 2Fc2)/3 |
5171 reflections | (Δ/σ)max < 0.001 |
372 parameters | Δρmax = 0.57 e Å−3 |
1 restraint | Δρmin = −0.48 e Å−3 |
C15H14N2O2 | V = 4998.17 (14) Å3 |
Mr = 254.28 | Z = 16 |
Monoclinic, C2/c | Mo Kα radiation |
a = 22.5305 (4) Å | µ = 0.09 mm−1 |
b = 12.0113 (2) Å | T = 100 K |
c = 21.4241 (3) Å | 0.38 × 0.23 × 0.18 mm |
β = 120.449 (1)° |
Bruker SMART APEXII CCD area-detector diffractometer | 5171 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 4238 reflections with I > 2σ(I) |
Tmin = 0.966, Tmax = 0.984 | Rint = 0.043 |
49947 measured reflections |
R[F2 > 2σ(F2)] = 0.067 | 1 restraint |
wR(F2) = 0.151 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.19 | w = 1/[σ2(Fo2) + (0.022P)2 + 16.3221P] where P = (Fo2 + 2Fc2)/3 |
5171 reflections | Δρmax = 0.57 e Å−3 |
372 parameters | Δρmin = −0.48 e Å−3 |
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1A | 0.04313 (11) | −0.05359 (15) | 0.34802 (11) | 0.0343 (5) | |
O2A | −0.04669 (10) | −0.05371 (16) | 0.38878 (11) | 0.0352 (5) | |
N1A | 0.12309 (11) | 0.04703 (18) | 0.31444 (12) | 0.0278 (5) | |
N2A | 0.12918 (13) | 0.2321 (2) | 0.31223 (14) | 0.0328 (5) | |
C1A | 0.16902 (14) | 0.0757 (2) | 0.29195 (14) | 0.0280 (6) | |
C2A | 0.20683 (15) | 0.0094 (2) | 0.27078 (16) | 0.0345 (6) | |
H2AA | 0.2047 | −0.0678 | 0.2714 | 0.041* | |
C3A | 0.24743 (16) | 0.0632 (3) | 0.24891 (17) | 0.0389 (7) | |
H3AA | 0.2731 | 0.0209 | 0.2346 | 0.047* | |
C4A | 0.25106 (16) | 0.1776 (3) | 0.24763 (18) | 0.0413 (7) | |
H4AA | 0.2792 | 0.2104 | 0.2326 | 0.050* | |
C5A | 0.21403 (16) | 0.2450 (3) | 0.26805 (17) | 0.0408 (7) | |
H5AA | 0.2165 | 0.3222 | 0.2670 | 0.049* | |
C6A | 0.17291 (14) | 0.1923 (2) | 0.29023 (15) | 0.0318 (6) | |
C7A | 0.09976 (13) | 0.1427 (2) | 0.32507 (13) | 0.0267 (5) | |
C8A | 0.04901 (13) | 0.1485 (2) | 0.34835 (14) | 0.0257 (5) | |
C9A | 0.02514 (14) | 0.2496 (2) | 0.36000 (15) | 0.0319 (6) | |
H9AA | 0.0424 | 0.3165 | 0.3540 | 0.038* | |
C10A | −0.02370 (15) | 0.2501 (2) | 0.38028 (16) | 0.0362 (7) | |
H10A | −0.0398 | 0.3175 | 0.3873 | 0.043* | |
C11A | −0.04945 (14) | 0.1499 (2) | 0.39045 (15) | 0.0328 (6) | |
H11A | −0.0824 | 0.1511 | 0.4043 | 0.039* | |
C12A | −0.02616 (14) | 0.0499 (2) | 0.38002 (14) | 0.0290 (6) | |
C13A | 0.02312 (13) | 0.0480 (2) | 0.35843 (13) | 0.0255 (5) | |
C14A | −0.09118 (15) | −0.0595 (3) | 0.41821 (17) | 0.0405 (7) | |
H14A | −0.1346 | −0.0230 | 0.3863 | 0.049* | |
H14B | −0.0700 | −0.0237 | 0.4652 | 0.049* | |
C15A | −0.10244 (18) | −0.1825 (3) | 0.4250 (2) | 0.0546 (9) | |
H15A | −0.1308 | −0.1911 | 0.4463 | 0.082* | |
H15B | −0.0588 | −0.2181 | 0.4553 | 0.082* | |
H15C | −0.1248 | −0.2163 | 0.3779 | 0.082* | |
O1B | 0.08605 (12) | 0.45323 (16) | 0.25795 (12) | 0.0409 (5) | |
O2B | 0.17852 (13) | 0.46703 (18) | 0.39287 (12) | 0.0530 (6) | |
N1B | 0.00726 (12) | 0.54159 (19) | 0.13347 (13) | 0.0332 (5) | |
N2B | −0.01822 (12) | 0.72236 (19) | 0.12353 (13) | 0.0303 (5) | |
C1B | −0.04540 (15) | 0.5626 (2) | 0.06352 (16) | 0.0335 (6) | |
C2B | −0.08028 (17) | 0.4918 (3) | 0.00407 (17) | 0.0438 (8) | |
H2BA | −0.0692 | 0.4166 | 0.0075 | 0.053* | |
C3B | −0.13164 (17) | 0.5368 (3) | −0.06005 (17) | 0.0461 (8) | |
H3BA | −0.1548 | 0.4912 | −0.1005 | 0.055* | |
C4B | −0.14955 (16) | 0.6492 (3) | −0.06553 (17) | 0.0448 (8) | |
H4BA | −0.1852 | 0.6762 | −0.1092 | 0.054* | |
C5B | −0.11554 (16) | 0.7216 (3) | −0.00752 (17) | 0.0393 (7) | |
H5BA | −0.1274 | 0.7965 | −0.0112 | 0.047* | |
C6B | −0.06268 (14) | 0.6763 (2) | 0.05654 (15) | 0.0313 (6) | |
C7B | 0.02231 (14) | 0.6394 (2) | 0.16742 (15) | 0.0295 (6) | |
C8B | 0.07626 (14) | 0.6529 (2) | 0.24254 (15) | 0.0286 (6) | |
C9B | 0.10079 (14) | 0.7581 (2) | 0.27454 (16) | 0.0303 (6) | |
H9BA | 0.0819 | 0.8224 | 0.2475 | 0.036* | |
C10B | 0.15256 (15) | 0.7658 (2) | 0.34562 (16) | 0.0332 (6) | |
H10B | 0.1688 | 0.8356 | 0.3660 | 0.040* | |
C11B | 0.18127 (16) | 0.6703 (2) | 0.38783 (16) | 0.0357 (7) | |
H11B | 0.2165 | 0.6764 | 0.4358 | 0.043* | |
C12B | 0.15684 (16) | 0.5670 (2) | 0.35757 (16) | 0.0368 (7) | |
C13B | 0.10542 (15) | 0.5578 (2) | 0.28474 (16) | 0.0319 (6) | |
C14B | 0.2276 (2) | 0.4683 (3) | 0.46948 (18) | 0.0576 (10) | |
H14C | 0.2090 | 0.5088 | 0.4949 | 0.069* | 0.581 (7) |
H14D | 0.2698 | 0.5046 | 0.4788 | 0.069* | 0.581 (7) |
H14E | 0.2218 | 0.4028 | 0.4915 | 0.069* | 0.419 (7) |
H14F | 0.2208 | 0.5323 | 0.4920 | 0.069* | 0.419 (7) |
C15B | 0.2415 (4) | 0.3527 (6) | 0.4943 (4) | 0.070 (2) | 0.581 (7) |
H15D | 0.2734 | 0.3510 | 0.5456 | 0.104* | 0.581 (7) |
H15E | 0.2609 | 0.3139 | 0.4697 | 0.104* | 0.581 (7) |
H15F | 0.1993 | 0.3172 | 0.4841 | 0.104* | 0.581 (7) |
C15C | 0.2967 (3) | 0.4728 (8) | 0.4792 (5) | 0.063 (3) | 0.419 (7) |
H15G | 0.3303 | 0.4739 | 0.5300 | 0.095* | 0.419 (7) |
H15H | 0.3012 | 0.5390 | 0.4568 | 0.095* | 0.419 (7) |
H15I | 0.3039 | 0.4085 | 0.4573 | 0.095* | 0.419 (7) |
H1OA | 0.0731 (18) | −0.030 (3) | 0.3339 (18) | 0.052 (10)* | |
H1NA | 0.1191 (17) | 0.297 (3) | 0.3128 (18) | 0.048 (10)* | |
H1OB | 0.0555 (19) | 0.462 (3) | 0.206 (2) | 0.061 (11)* | |
H1NB | −0.0186 (17) | 0.797 (3) | 0.1365 (18) | 0.052 (10)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1A | 0.0431 (12) | 0.0193 (9) | 0.0518 (13) | −0.0025 (8) | 0.0323 (11) | −0.0009 (8) |
O2A | 0.0383 (11) | 0.0298 (10) | 0.0448 (12) | −0.0082 (9) | 0.0264 (10) | −0.0019 (9) |
N1A | 0.0325 (12) | 0.0206 (11) | 0.0335 (12) | −0.0002 (9) | 0.0191 (10) | −0.0002 (9) |
N2A | 0.0359 (13) | 0.0209 (12) | 0.0431 (14) | 0.0007 (10) | 0.0210 (12) | 0.0060 (10) |
C1A | 0.0303 (14) | 0.0240 (13) | 0.0278 (13) | −0.0017 (11) | 0.0133 (11) | 0.0029 (10) |
C2A | 0.0376 (16) | 0.0281 (14) | 0.0389 (16) | 0.0001 (12) | 0.0202 (13) | 0.0017 (12) |
C3A | 0.0388 (16) | 0.0428 (17) | 0.0399 (16) | 0.0019 (14) | 0.0236 (14) | 0.0032 (13) |
C4A | 0.0374 (16) | 0.0426 (18) | 0.0490 (18) | −0.0001 (14) | 0.0256 (14) | 0.0123 (14) |
C5A | 0.0425 (17) | 0.0315 (16) | 0.0520 (19) | −0.0031 (13) | 0.0265 (15) | 0.0102 (14) |
C6A | 0.0302 (14) | 0.0306 (15) | 0.0331 (15) | 0.0008 (11) | 0.0149 (12) | 0.0082 (12) |
C7A | 0.0263 (13) | 0.0243 (13) | 0.0247 (13) | −0.0020 (10) | 0.0092 (11) | 0.0019 (10) |
C8A | 0.0277 (13) | 0.0202 (12) | 0.0259 (13) | −0.0006 (10) | 0.0111 (11) | 0.0019 (10) |
C9A | 0.0359 (15) | 0.0231 (13) | 0.0357 (15) | 0.0007 (11) | 0.0174 (13) | 0.0030 (11) |
C10A | 0.0429 (17) | 0.0242 (14) | 0.0427 (17) | 0.0071 (12) | 0.0226 (14) | −0.0007 (12) |
C11A | 0.0321 (14) | 0.0343 (15) | 0.0339 (15) | 0.0000 (12) | 0.0182 (13) | −0.0027 (12) |
C12A | 0.0287 (14) | 0.0277 (14) | 0.0273 (14) | −0.0035 (11) | 0.0117 (11) | 0.0006 (11) |
C13A | 0.0288 (13) | 0.0202 (12) | 0.0246 (13) | −0.0017 (10) | 0.0115 (11) | 0.0000 (10) |
C14A | 0.0353 (16) | 0.0524 (19) | 0.0362 (16) | −0.0049 (14) | 0.0199 (14) | 0.0054 (14) |
C15A | 0.049 (2) | 0.059 (2) | 0.059 (2) | −0.0151 (17) | 0.0297 (18) | 0.0116 (18) |
O1B | 0.0528 (13) | 0.0209 (10) | 0.0370 (12) | 0.0008 (9) | 0.0139 (10) | −0.0005 (8) |
O2B | 0.0737 (17) | 0.0314 (12) | 0.0355 (12) | 0.0072 (11) | 0.0143 (12) | 0.0051 (9) |
N1B | 0.0361 (13) | 0.0250 (12) | 0.0356 (13) | 0.0000 (10) | 0.0159 (11) | −0.0009 (10) |
N2B | 0.0370 (13) | 0.0203 (11) | 0.0390 (13) | 0.0024 (10) | 0.0233 (11) | 0.0035 (10) |
C1B | 0.0365 (15) | 0.0277 (14) | 0.0379 (16) | 0.0032 (12) | 0.0200 (13) | 0.0030 (12) |
C2B | 0.0485 (19) | 0.0346 (17) | 0.0410 (17) | −0.0007 (14) | 0.0172 (15) | −0.0021 (13) |
C3B | 0.0463 (18) | 0.0474 (19) | 0.0372 (17) | −0.0037 (15) | 0.0158 (15) | −0.0010 (14) |
C4B | 0.0397 (17) | 0.055 (2) | 0.0370 (17) | 0.0017 (15) | 0.0172 (14) | 0.0107 (15) |
C5B | 0.0436 (17) | 0.0351 (16) | 0.0449 (18) | 0.0063 (13) | 0.0265 (15) | 0.0145 (13) |
C6B | 0.0328 (14) | 0.0309 (14) | 0.0370 (15) | −0.0007 (12) | 0.0228 (13) | 0.0043 (12) |
C7B | 0.0326 (14) | 0.0255 (14) | 0.0380 (15) | 0.0012 (11) | 0.0234 (13) | 0.0011 (11) |
C8B | 0.0314 (14) | 0.0243 (13) | 0.0384 (15) | 0.0001 (11) | 0.0237 (12) | −0.0023 (11) |
C9B | 0.0370 (15) | 0.0202 (13) | 0.0438 (16) | 0.0021 (11) | 0.0278 (14) | 0.0009 (11) |
C10B | 0.0397 (16) | 0.0238 (14) | 0.0452 (17) | −0.0052 (12) | 0.0282 (14) | −0.0108 (12) |
C11B | 0.0402 (16) | 0.0329 (15) | 0.0348 (15) | 0.0002 (12) | 0.0196 (13) | −0.0061 (12) |
C12B | 0.0462 (17) | 0.0288 (15) | 0.0373 (16) | 0.0029 (13) | 0.0225 (14) | −0.0005 (12) |
C13B | 0.0383 (15) | 0.0231 (13) | 0.0390 (16) | −0.0022 (11) | 0.0230 (13) | −0.0051 (11) |
C14B | 0.071 (3) | 0.046 (2) | 0.0390 (19) | 0.0051 (18) | 0.0161 (18) | 0.0034 (16) |
C15B | 0.067 (5) | 0.070 (5) | 0.044 (4) | 0.014 (4) | 0.008 (3) | 0.013 (3) |
C15C | 0.062 (6) | 0.049 (5) | 0.068 (6) | 0.014 (4) | 0.024 (5) | 0.009 (4) |
O1A—C13A | 1.358 (3) | N1B—C7B | 1.332 (3) |
O1A—H1OA | 0.91 (4) | N1B—C1B | 1.384 (4) |
O2A—C12A | 1.374 (3) | N2B—C7B | 1.356 (3) |
O2A—C14A | 1.431 (3) | N2B—C6B | 1.383 (4) |
N1A—C7A | 1.330 (3) | N2B—H1NB | 0.94 (4) |
N1A—C1A | 1.388 (3) | C1B—C2B | 1.396 (4) |
N2A—C7A | 1.361 (3) | C1B—C6B | 1.407 (4) |
N2A—C6A | 1.376 (4) | C2B—C3B | 1.381 (4) |
N2A—H1NA | 0.82 (4) | C2B—H2BA | 0.9300 |
C1A—C2A | 1.399 (4) | C3B—C4B | 1.397 (5) |
C1A—C6A | 1.404 (4) | C3B—H3BA | 0.9300 |
C2A—C3A | 1.381 (4) | C4B—C5B | 1.387 (5) |
C2A—H2AA | 0.9300 | C4B—H4BA | 0.9300 |
C3A—C4A | 1.378 (4) | C5B—C6B | 1.393 (4) |
C3A—H3AA | 0.9300 | C5B—H5BA | 0.9300 |
C4A—C5A | 1.383 (4) | C7B—C8B | 1.453 (4) |
C4A—H4AA | 0.9300 | C8B—C13B | 1.396 (4) |
C5A—C6A | 1.390 (4) | C8B—C9B | 1.410 (4) |
C5A—H5AA | 0.9300 | C9B—C10B | 1.374 (4) |
C7A—C8A | 1.463 (4) | C9B—H9BA | 0.9300 |
C8A—C9A | 1.400 (4) | C10B—C11B | 1.400 (4) |
C8A—C13A | 1.404 (3) | C10B—H10B | 0.9300 |
C9A—C10A | 1.373 (4) | C11B—C12B | 1.378 (4) |
C9A—H9AA | 0.9300 | C11B—H11B | 0.9300 |
C10A—C11A | 1.400 (4) | C12B—C13B | 1.399 (4) |
C10A—H10A | 0.9300 | C14B—C15C | 1.4633 (10) |
C11A—C12A | 1.373 (4) | C14B—C15B | 1.464 (7) |
C11A—H11A | 0.9300 | C14B—H14C | 0.9700 |
C12A—C13A | 1.403 (4) | C14B—H14D | 0.9700 |
C14A—C15A | 1.519 (5) | C14B—H14E | 0.9599 |
C14A—H14A | 0.9700 | C14B—H14F | 0.9600 |
C14A—H14B | 0.9700 | C15B—H14E | 0.7332 |
C15A—H15A | 0.9600 | C15B—H15D | 0.9600 |
C15A—H15B | 0.9600 | C15B—H15E | 0.9600 |
C15A—H15C | 0.9600 | C15B—H15F | 0.9600 |
O1B—C13B | 1.358 (3) | C15C—H15G | 0.9600 |
O1B—H1OB | 0.97 (4) | C15C—H15H | 0.9600 |
O2B—C12B | 1.370 (4) | C15C—H15I | 0.9600 |
O2B—C14B | 1.441 (4) | ||
C13A—O1A—H1OA | 98 (2) | C3B—C2B—C1B | 118.0 (3) |
C12A—O2A—C14A | 117.6 (2) | C3B—C2B—H2BA | 121.0 |
C7A—N1A—C1A | 105.9 (2) | C1B—C2B—H2BA | 121.0 |
C7A—N2A—C6A | 107.6 (2) | C2B—C3B—C4B | 121.5 (3) |
C7A—N2A—H1NA | 126 (2) | C2B—C3B—H3BA | 119.3 |
C6A—N2A—H1NA | 126 (2) | C4B—C3B—H3BA | 119.3 |
N1A—C1A—C2A | 130.9 (2) | C5B—C4B—C3B | 121.7 (3) |
N1A—C1A—C6A | 108.9 (2) | C5B—C4B—H4BA | 119.1 |
C2A—C1A—C6A | 120.2 (3) | C3B—C4B—H4BA | 119.1 |
C3A—C2A—C1A | 117.5 (3) | C4B—C5B—C6B | 116.5 (3) |
C3A—C2A—H2AA | 121.3 | C4B—C5B—H5BA | 121.8 |
C1A—C2A—H2AA | 121.3 | C6B—C5B—H5BA | 121.8 |
C4A—C3A—C2A | 121.9 (3) | N2B—C6B—C5B | 132.4 (3) |
C4A—C3A—H3AA | 119.0 | N2B—C6B—C1B | 105.2 (2) |
C2A—C3A—H3AA | 119.0 | C5B—C6B—C1B | 122.4 (3) |
C3A—C4A—C5A | 121.7 (3) | N1B—C7B—N2B | 111.9 (2) |
C3A—C4A—H4AA | 119.1 | N1B—C7B—C8B | 122.8 (2) |
C5A—C4A—H4AA | 119.1 | N2B—C7B—C8B | 125.3 (2) |
C4A—C5A—C6A | 117.1 (3) | C13B—C8B—C9B | 118.6 (3) |
C4A—C5A—H5AA | 121.5 | C13B—C8B—C7B | 118.8 (2) |
C6A—C5A—H5AA | 121.5 | C9B—C8B—C7B | 122.7 (2) |
N2A—C6A—C5A | 132.5 (3) | C10B—C9B—C8B | 120.2 (3) |
N2A—C6A—C1A | 105.8 (2) | C10B—C9B—H9BA | 119.9 |
C5A—C6A—C1A | 121.6 (3) | C8B—C9B—H9BA | 119.9 |
N1A—C7A—N2A | 111.8 (2) | C9B—C10B—C11B | 121.0 (3) |
N1A—C7A—C8A | 123.0 (2) | C9B—C10B—H10B | 119.5 |
N2A—C7A—C8A | 125.2 (2) | C11B—C10B—H10B | 119.5 |
C9A—C8A—C13A | 119.4 (2) | C12B—C11B—C10B | 119.3 (3) |
C9A—C8A—C7A | 122.6 (2) | C12B—C11B—H11B | 120.3 |
C13A—C8A—C7A | 118.0 (2) | C10B—C11B—H11B | 120.3 |
C10A—C9A—C8A | 120.2 (3) | O2B—C12B—C11B | 125.7 (3) |
C10A—C9A—H9AA | 119.9 | O2B—C12B—C13B | 114.1 (3) |
C8A—C9A—H9AA | 119.9 | C11B—C12B—C13B | 120.2 (3) |
C9A—C10A—C11A | 120.5 (3) | O1B—C13B—C8B | 122.5 (3) |
C9A—C10A—H10A | 119.8 | O1B—C13B—C12B | 116.8 (3) |
C11A—C10A—H10A | 119.8 | C8B—C13B—C12B | 120.6 (3) |
C12A—C11A—C10A | 120.2 (3) | O2B—C14B—C15C | 108.0 (5) |
C12A—C11A—H11A | 119.9 | O2B—C14B—C15B | 107.6 (4) |
C10A—C11A—H11A | 119.9 | C15C—C14B—C15B | 88.1 (5) |
C11A—C12A—O2A | 126.0 (2) | O2B—C14B—H14C | 110.2 |
C11A—C12A—C13A | 120.0 (2) | C15C—C14B—H14C | 129.3 |
O2A—C12A—C13A | 114.1 (2) | C15B—C14B—H14C | 110.2 |
O1A—C13A—C12A | 117.0 (2) | O2B—C14B—H14D | 110.2 |
O1A—C13A—C8A | 123.3 (2) | C15B—C14B—H14D | 110.2 |
C12A—C13A—C8A | 119.8 (2) | H14C—C14B—H14D | 108.5 |
O2A—C14A—C15A | 106.2 (3) | O2B—C14B—H14E | 109.5 |
O2A—C14A—H14A | 110.5 | C15C—C14B—H14E | 111.1 |
C15A—C14A—H14A | 110.5 | H14C—C14B—H14E | 85.9 |
O2A—C14A—H14B | 110.5 | H14D—C14B—H14E | 129.1 |
C15A—C14A—H14B | 110.5 | O2B—C14B—H14F | 110.8 |
H14A—C14A—H14B | 108.7 | C15C—C14B—H14F | 109.1 |
C14A—C15A—H15A | 109.5 | C15B—C14B—H14F | 129.5 |
C14A—C15A—H15B | 109.5 | H14D—C14B—H14F | 85.8 |
H15A—C15A—H15B | 109.5 | H14E—C14B—H14F | 108.3 |
C14A—C15A—H15C | 109.5 | C14B—C15B—H15D | 109.5 |
H15A—C15A—H15C | 109.5 | H14E—C15B—H15D | 100.5 |
H15B—C15A—H15C | 109.5 | C14B—C15B—H15E | 109.5 |
C13B—O1B—H1OB | 106 (2) | H14E—C15B—H15E | 141.2 |
C12B—O2B—C14B | 118.2 (3) | C14B—C15B—H15F | 109.5 |
C7B—N1B—C1B | 105.8 (2) | H14E—C15B—H15F | 81.8 |
C7B—N2B—C6B | 107.8 (2) | C14B—C15C—H15G | 109.5 |
C7B—N2B—H1NB | 127 (2) | C14B—C15C—H15H | 109.5 |
C6B—N2B—H1NB | 125 (2) | H15G—C15C—H15H | 109.5 |
N1B—C1B—C2B | 130.9 (3) | C14B—C15C—H15I | 109.5 |
N1B—C1B—C6B | 109.4 (3) | H15G—C15C—H15I | 109.5 |
C2B—C1B—C6B | 119.8 (3) | H15H—C15C—H15I | 109.5 |
C7A—N1A—C1A—C2A | −177.4 (3) | C7B—N1B—C1B—C6B | −1.1 (3) |
C7A—N1A—C1A—C6A | 0.6 (3) | N1B—C1B—C2B—C3B | 179.8 (3) |
N1A—C1A—C2A—C3A | 178.1 (3) | C6B—C1B—C2B—C3B | −0.6 (5) |
C6A—C1A—C2A—C3A | 0.3 (4) | C1B—C2B—C3B—C4B | −1.2 (5) |
C1A—C2A—C3A—C4A | −0.1 (5) | C2B—C3B—C4B—C5B | 1.7 (5) |
C2A—C3A—C4A—C5A | −0.2 (5) | C3B—C4B—C5B—C6B | −0.1 (5) |
C3A—C4A—C5A—C6A | 0.2 (5) | C7B—N2B—C6B—C5B | 178.4 (3) |
C7A—N2A—C6A—C5A | 177.6 (3) | C7B—N2B—C6B—C1B | −0.6 (3) |
C7A—N2A—C6A—C1A | −1.1 (3) | C4B—C5B—C6B—N2B | 179.3 (3) |
C4A—C5A—C6A—N2A | −178.5 (3) | C4B—C5B—C6B—C1B | −1.8 (4) |
C4A—C5A—C6A—C1A | 0.0 (4) | N1B—C1B—C6B—N2B | 1.1 (3) |
N1A—C1A—C6A—N2A | 0.3 (3) | C2B—C1B—C6B—N2B | −178.6 (3) |
C2A—C1A—C6A—N2A | 178.6 (2) | N1B—C1B—C6B—C5B | −178.1 (2) |
N1A—C1A—C6A—C5A | −178.6 (3) | C2B—C1B—C6B—C5B | 2.2 (4) |
C2A—C1A—C6A—C5A | −0.3 (4) | C1B—N1B—C7B—N2B | 0.7 (3) |
C1A—N1A—C7A—N2A | −1.3 (3) | C1B—N1B—C7B—C8B | −179.1 (2) |
C1A—N1A—C7A—C8A | 179.1 (2) | C6B—N2B—C7B—N1B | 0.0 (3) |
C6A—N2A—C7A—N1A | 1.5 (3) | C6B—N2B—C7B—C8B | 179.7 (2) |
C6A—N2A—C7A—C8A | −178.9 (2) | N1B—C7B—C8B—C13B | −11.6 (4) |
N1A—C7A—C8A—C9A | 179.5 (3) | N2B—C7B—C8B—C13B | 168.7 (3) |
N2A—C7A—C8A—C9A | 0.0 (4) | N1B—C7B—C8B—C9B | 168.0 (3) |
N1A—C7A—C8A—C13A | −1.2 (4) | N2B—C7B—C8B—C9B | −11.8 (4) |
N2A—C7A—C8A—C13A | 179.3 (2) | C13B—C8B—C9B—C10B | 0.4 (4) |
C13A—C8A—C9A—C10A | −0.7 (4) | C7B—C8B—C9B—C10B | −179.2 (2) |
C7A—C8A—C9A—C10A | 178.5 (3) | C8B—C9B—C10B—C11B | −0.9 (4) |
C8A—C9A—C10A—C11A | 0.9 (4) | C9B—C10B—C11B—C12B | −0.4 (4) |
C9A—C10A—C11A—C12A | −0.2 (4) | C14B—O2B—C12B—C11B | 4.6 (5) |
C10A—C11A—C12A—O2A | 179.4 (3) | C14B—O2B—C12B—C13B | −175.3 (3) |
C10A—C11A—C12A—C13A | −0.6 (4) | C10B—C11B—C12B—O2B | −177.9 (3) |
C14A—O2A—C12A—C11A | −6.6 (4) | C10B—C11B—C12B—C13B | 2.1 (4) |
C14A—O2A—C12A—C13A | 173.4 (2) | C9B—C8B—C13B—O1B | −178.5 (3) |
C11A—C12A—C13A—O1A | −179.0 (2) | C7B—C8B—C13B—O1B | 1.1 (4) |
O2A—C12A—C13A—O1A | 1.0 (3) | C9B—C8B—C13B—C12B | 1.3 (4) |
C11A—C12A—C13A—C8A | 0.7 (4) | C7B—C8B—C13B—C12B | −179.1 (3) |
O2A—C12A—C13A—C8A | −179.3 (2) | O2B—C12B—C13B—O1B | −2.8 (4) |
C9A—C8A—C13A—O1A | 179.7 (2) | C11B—C12B—C13B—O1B | 177.3 (3) |
C7A—C8A—C13A—O1A | 0.4 (4) | O2B—C12B—C13B—C8B | 177.4 (3) |
C9A—C8A—C13A—C12A | 0.0 (4) | C11B—C12B—C13B—C8B | −2.5 (4) |
C7A—C8A—C13A—C12A | −179.4 (2) | C12B—O2B—C14B—C15C | −87.0 (5) |
C12A—O2A—C14A—C15A | −177.4 (2) | C12B—O2B—C14B—C15B | 179.2 (4) |
C7B—N1B—C1B—C2B | 178.6 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1A—H1OA···N1A | 0.91 (4) | 1.67 (4) | 2.557 (4) | 164 (4) |
N2A—H1NA···O1B | 0.81 (4) | 2.14 (4) | 2.865 (3) | 149 (3) |
N2A—H1NA···O2B | 0.81 (4) | 2.57 (4) | 3.199 (3) | 136 (3) |
O1B—H1OB···N1B | 0.97 (4) | 1.67 (4) | 2.567 (3) | 151 (3) |
N2B—H1NB···O1Ai | 0.94 (4) | 1.95 (4) | 2.877 (3) | 167 (4) |
N2B—H1NB···O2Ai | 0.94 (4) | 2.55 (4) | 3.136 (3) | 121 (3) |
C4A—H4AA···Cg1ii | 0.93 | 2.80 | 3.590 (4) | 143 |
C14B—H14C···Cg2iii | 0.97 | 2.84 | 3.721 (5) | 152 |
C15B—H15D···Cg3iv | 0.96 | 2.76 | 3.715 (8) | 176 |
Symmetry codes: (i) −x, y+1, −z+1/2; (ii) x, −y−1, z−1/2; (iii) −x, y, −z+1/2; (iv) −x+1/2, −y+1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C15H14N2O2 |
Mr | 254.28 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 100 |
a, b, c (Å) | 22.5305 (4), 12.0113 (2), 21.4241 (3) |
β (°) | 120.449 (1) |
V (Å3) | 4998.17 (14) |
Z | 16 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.38 × 0.23 × 0.18 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.966, 0.984 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 49947, 5171, 4238 |
Rint | 0.043 |
(sin θ/λ)max (Å−1) | 0.628 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.067, 0.151, 1.19 |
No. of reflections | 5171 |
No. of parameters | 372 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
w = 1/[σ2(Fo2) + (0.022P)2 + 16.3221P] where P = (Fo2 + 2Fc2)/3 | |
Δρmax, Δρmin (e Å−3) | 0.57, −0.48 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O1A—H1OA···N1A | 0.91 (4) | 1.67 (4) | 2.557 (4) | 164 (4) |
N2A—H1NA···O1B | 0.81 (4) | 2.14 (4) | 2.865 (3) | 149 (3) |
N2A—H1NA···O2B | 0.81 (4) | 2.57 (4) | 3.199 (3) | 136 (3) |
O1B—H1OB···N1B | 0.97 (4) | 1.67 (4) | 2.567 (3) | 151 (3) |
N2B—H1NB···O1Ai | 0.94 (4) | 1.95 (4) | 2.877 (3) | 167 (4) |
N2B—H1NB···O2Ai | 0.94 (4) | 2.55 (4) | 3.136 (3) | 121 (3) |
C4A—H4AA···Cg1ii | 0.9300 | 2.8000 | 3.590 (4) | 143.00 |
C14B—H14C···Cg2iii | 0.9700 | 2.8400 | 3.721 (5) | 152.00 |
C15B—H15D···Cg3iv | 0.9600 | 2.7600 | 3.715 (8) | 176.00 |
Symmetry codes: (i) −x, y+1, −z+1/2; (ii) x, −y−1, z−1/2; (iii) −x, y, −z+1/2; (iv) −x+1/2, −y+1/2, −z+1. |
Footnotes
‡Additional correspondence author: e-mail: hkargar@pnu.ac.ir.
Acknowledgements
HKF and RK thank the Malaysian Government and Universiti Sains Malaysia for the Science Fund grant No. 305/PFIZIK/613312. RK thanks Universiti Sains Malaysia for a post-doctoral research fellowship. YCS thanks Universiti Sains Malaysia for a studentship award. HK and AJ thank PNU for financial support. HKF also thanks Universiti Sains Malaysia for the Research University Golden Goose grant No. 1001/PFIZIK/811012.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Benzimidazoles are used widely in biological applications and as pharmaceutical agents (Craigo et al., 1999; Gudmundsson et al., 2000; Trivedi et al., 2006). They are also used as topoisomerase I inhibitors (Kim et al., 1996) and for antitumor activity (Ramla et al., 2006). Due to these important applications, many synthetic routes towards benzimidazoles have been developed. They can, for example, be synthesized by the reaction of phenolic aldehydes with o-phenylenediamine (Latif et al.,, 1983). Based on this route the title compound was synthesized and its crystal structure is reported here.
The asymmetric unit of the title compound, Fig. 1, consists of two crystallographically independent molecules, A and B with a slightly different conformations due to a disordered group. Intramolecular O—H···N hydrogen bonds generate S(6) ring motifs (Bernstein et al., 1995). The two molecules A and B are linked together by a bifurcated hydrogen bond involving the two oxygen atoms of the hydroxy and ethoxy groups with a R12(5) ring motif. The molecule A is almost planar wheares the molecule B is slightly twisted with the dihedral angles between the benzimidazole and the phenyl rings being 2.65 (12) and 13.17 (15) °, respectively. The methyl group of molecule B is disordered over two positions with a refined site-occupancy ratio of 0.581 (7):0.419 (7). The crystal structure is further stabilized by intermolecular C—H···π [Cg1, Cg2 and Cg3 are the centroids of the C8B–C13B, C1B–C6B and N1A/C1A/C6A/N2A/C7A rings] (Table 1) and π-π interactions [Cg1···Cg4iii = 3.596 (2) and Cg3···Cg5iii = 3.4758 (16) Å; (iii) -x, y, 1/2 - z ; Cg4 and Cg5 are the centroids of the N1B/C1B/C6B/N2B/C7B and C8A–C13A rings]. In the crystal structure, molecules are linked together into 1-D extended chains along the [0 1 0] direction (Fig. 2).