organic compounds
2,5-Dibromopyridine
aFaculty of Information Technology and Science, Al-Balqa'a Applied University, Salt, Jordan, and bDepartment of Chemistry, Al al-Bayt University, Mafraq 25113, Jordan
*Correspondence e-mail: bfali@aabu.edu.jo
In the title compound, C5H3Br2N, C—H⋯N hydrogen-bonding interactions and Br⋯Br interactions [3.9418 (3) and 3.8986 (3) Å] connect the molecules into planar sheets stacked perpendicular to the b axis. In addition, pyridyl–pyridyl intersheet π–π stacking interactions [centroid–centroid distance = 4.12 (1) Å] result in a three-dimensional network.
Related literature
For hydrogen bonding, see: Desiraju (1997). For related structures, see: Al-Far & Ali (2007, 2008); Ali & Al-Far (2008); Ali et al. (2008a,b). For bond-length data, see: Allen et al. (1987). For theoretical analysis, see: Awwadi et al. (2006, 2007).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2006); cell SAINT-Plus (Bruker, 2006); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: XP (Bruker, 2004) and SHELXTL; software used to prepare material for publication: XCIF (Bruker, 2004) and SHELXTL.
Supporting information
10.1107/S160053680900974X/pv2146sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053680900974X/pv2146Isup2.hkl
The title compound crystallized during a reaction aiming to crystallize the anion [CuBr4]2- with 2,5-dibromopyridinium cation. Colorless diamond like crystals of the title compound were obtained from an ethanolic solution of the reaction which involved a sequential addition to excess 2,5-dibrormopyridine (2.25 mmole) in ethanol of CdCl2 (1 mmole) and 60% HBr (1 ml) in ethanol.
Hydrogen atoms were positioned geometrically, with C—H = 0.95 Å, and constrained to ride on their parent atoms with Uiso(H) = 1.2Ueq(C).
Data collection: SMART (Bruker, 2006); cell
SAINT-Plus (Bruker, 2006); data reduction: SAINT-Plus (Bruker, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: XP (Bruker, 2004) and SHELXTL (Sheldrick, 2008); software used to prepare material for publication: XCIF (Bruker, 2004) and SHELXTL (Sheldrick, 2008).Fig. 1. A molecular drawing of (I) shown with 50% probability ellipsoids. | |
Fig. 2. Packing diagram of (I) down the b-axis. Hydrogen bonding and Br···Br interactions are shown as dashed lines. |
C5H3Br2N | F(000) = 440 |
Mr = 236.90 | Dx = 2.489 Mg m−3 |
Orthorhombic, Pnma | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2n | Cell parameters from 5485 reflections |
a = 6.1063 (4) Å | θ = 2.6–30.0° |
b = 6.5442 (4) Å | µ = 12.71 mm−1 |
c = 15.8196 (9) Å | T = 90 K |
V = 632.17 (7) Å3 | Diamond, colourless |
Z = 4 | 0.46 × 0.21 × 0.14 mm |
Bruker SMART APEX diffractometer | 996 independent reflections |
Radiation source: fine-focus sealed tube | 887 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.030 |
Detector resolution: 8.3 pixels mm-1 | θmax = 30.0°, θmin = 3.6° |
ω scans | h = −8→8 |
Absorption correction: numerical (SADABS; Bruker, 2004) | k = −9→9 |
Tmin = 0.053, Tmax = 0.170 | l = −22→22 |
8997 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.021 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.054 | H-atom parameters constrained |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0364P)2 + 0.1337P] where P = (Fo2 + 2Fc2)/3 |
996 reflections | (Δ/σ)max < 0.001 |
49 parameters | Δρmax = 0.68 e Å−3 |
0 restraints | Δρmin = −0.77 e Å−3 |
C5H3Br2N | V = 632.17 (7) Å3 |
Mr = 236.90 | Z = 4 |
Orthorhombic, Pnma | Mo Kα radiation |
a = 6.1063 (4) Å | µ = 12.71 mm−1 |
b = 6.5442 (4) Å | T = 90 K |
c = 15.8196 (9) Å | 0.46 × 0.21 × 0.14 mm |
Bruker SMART APEX diffractometer | 996 independent reflections |
Absorption correction: numerical (SADABS; Bruker, 2004) | 887 reflections with I > 2σ(I) |
Tmin = 0.053, Tmax = 0.170 | Rint = 0.030 |
8997 measured reflections |
R[F2 > 2σ(F2)] = 0.021 | 0 restraints |
wR(F2) = 0.054 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.68 e Å−3 |
996 reflections | Δρmin = −0.77 e Å−3 |
49 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Br2 | 0.41023 (4) | 0.7500 | 0.171199 (12) | 0.01101 (9) | |
N1 | 0.4781 (3) | 0.7500 | −0.00105 (12) | 0.0077 (4) | |
Br5 | 0.98268 (4) | 0.7500 | −0.173378 (13) | 0.01214 (9) | |
C2 | 0.5860 (4) | 0.7500 | 0.07141 (12) | 0.0063 (4) | |
C3 | 0.8124 (3) | 0.7500 | 0.07962 (13) | 0.0089 (4) | |
H3A | 0.8808 | 0.7500 | 0.1336 | 0.011* | |
C4 | 0.9342 (4) | 0.7500 | 0.00590 (14) | 0.0088 (4) | |
H4A | 1.0897 | 0.7500 | 0.0077 | 0.011* | |
C5 | 0.8236 (4) | 0.7500 | −0.07079 (12) | 0.0074 (4) | |
C6 | 0.5958 (4) | 0.7500 | −0.07196 (12) | 0.0083 (4) | |
H6A | 0.5221 | 0.7500 | −0.1248 | 0.010* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br2 | 0.01285 (15) | 0.01709 (15) | 0.00310 (12) | 0.000 | 0.00345 (7) | 0.000 |
N1 | 0.0081 (9) | 0.0110 (9) | 0.0041 (8) | 0.000 | 0.0000 (6) | 0.000 |
Br5 | 0.01335 (15) | 0.01839 (15) | 0.00466 (13) | 0.000 | 0.00480 (7) | 0.000 |
C2 | 0.0095 (11) | 0.0078 (10) | 0.0015 (8) | 0.000 | 0.0012 (7) | 0.000 |
C3 | 0.0087 (10) | 0.0114 (10) | 0.0066 (9) | 0.000 | −0.0024 (8) | 0.000 |
C4 | 0.0067 (9) | 0.0114 (10) | 0.0084 (10) | 0.000 | −0.0018 (8) | 0.000 |
C5 | 0.0088 (10) | 0.0096 (10) | 0.0040 (9) | 0.000 | 0.0026 (7) | 0.000 |
C6 | 0.0100 (11) | 0.0100 (11) | 0.0048 (9) | 0.000 | −0.0019 (7) | 0.000 |
Br2—C2 | 1.909 (2) | C3—H3A | 0.9500 |
N1—C2 | 1.322 (3) | C4—C5 | 1.389 (3) |
N1—C6 | 1.332 (3) | C4—H4A | 0.9500 |
Br5—C5 | 1.891 (2) | C5—C6 | 1.391 (3) |
C2—C3 | 1.389 (3) | C6—H6A | 0.9500 |
C3—C4 | 1.383 (3) | ||
C2—N1—C6 | 117.43 (19) | C3—C4—H4A | 120.8 |
N1—C2—C3 | 125.27 (19) | C5—C4—H4A | 120.8 |
N1—C2—Br2 | 115.88 (16) | C4—C5—C6 | 119.87 (19) |
C3—C2—Br2 | 118.85 (15) | C4—C5—Br5 | 119.98 (17) |
C4—C3—C2 | 117.15 (19) | C6—C5—Br5 | 120.15 (16) |
C4—C3—H3A | 121.4 | N1—C6—C5 | 121.91 (19) |
C2—C3—H3A | 121.4 | N1—C6—H6A | 119.0 |
C3—C4—C5 | 118.38 (19) | C5—C6—H6A | 119.0 |
C6—N1—C2—C3 | 0.0 | C3—C4—C5—C6 | 0.0 |
C6—N1—C2—Br2 | 180.0 | C3—C4—C5—Br5 | 180.0 |
N1—C2—C3—C4 | 0.0 | C2—N1—C6—C5 | 0.0 |
Br2—C2—C3—C4 | 180.0 | C4—C5—C6—N1 | 0.0 |
C2—C3—C4—C5 | 0.0 | Br5—C5—C6—N1 | 180.0 |
D—H···A | D—H | H···A | D···A | D—H···A |
C4—H4A···N1i | 0.95 | 2.38 | 3.323 (3) | 175 |
Symmetry code: (i) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C5H3Br2N |
Mr | 236.90 |
Crystal system, space group | Orthorhombic, Pnma |
Temperature (K) | 90 |
a, b, c (Å) | 6.1063 (4), 6.5442 (4), 15.8196 (9) |
V (Å3) | 632.17 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 12.71 |
Crystal size (mm) | 0.46 × 0.21 × 0.14 |
Data collection | |
Diffractometer | Bruker SMART APEX diffractometer |
Absorption correction | Numerical (SADABS; Bruker, 2004) |
Tmin, Tmax | 0.053, 0.170 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8997, 996, 887 |
Rint | 0.030 |
(sin θ/λ)max (Å−1) | 0.704 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.021, 0.054, 1.05 |
No. of reflections | 996 |
No. of parameters | 49 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.68, −0.77 |
Computer programs: SMART (Bruker, 2006), SAINT-Plus (Bruker, 2006), SHELXS97 (Sheldrick, 2008), XP (Bruker, 2004) and SHELXTL (Sheldrick, 2008), XCIF (Bruker, 2004) and SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
C4—H4A···N1i | 0.95 | 2.38 | 3.323 (3) | 175 |
Symmetry code: (i) x+1, y, z. |
Acknowledgements
Al-Balqa'a Applied University and Al al-Bayt University are thanked for financial support.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Non-covalent interactions play an important role in organizing structural units in both natural and artificial systems (Desiraju, 1997). The interactions governing the crystal organization are expected to affect the packing and specific properties of solids. Intermolecular interactions are the essence of supramolecular chemistry, and the field of crystal supramolecularity seeks to understand intermolecular interactions by analyses of crystal packing. We are presently interested in the synthesis and the structural aspects of halo-metal anion salts containing different organic cations (Al-Far & Ali 2007, 2008; Ali et al. 2008a, b; Ali & Al-Far 2008). The title compound, (I), arose accidentally when attempting to crystallize CdBr42- with 2,5-bibromopyridinium cation. The compound had not been reported previously, thus, the structure of (I) has been characterized crystallographically and is presented here.
The bond distances and angles within the molecule of (I) (Fig. 1) are normal (Allen et al., 1987). There is a non-classical hydrogen bonding interaction of the type C—H···N in the crystal structure which links molecules into one-dimensional chains (Fig. 2) parallel to the a-axis. The strength of the hydrogen bonds is represented by relatively short D···A distance and D—H···A angle (H···A = 2.38 Å, D—H···A 175°, Table 1). The resulting chains are further connected through Br···Br interactions in a zig zag arrangement to form sheets in the ac plane (Fig. 2); the Br···Br separation being 3.9418 (3) and 3.8986 (3) Å. The sheets are stacked along the b-axis with pyridyl···pyridyl π···π stacking intermolecular inreactions with distance between the centroids of the rings being 4.12 (1) Å. It is noteworthy that structural and theoritical results (Awwadi et al., 2006; Awwadi et al., 2007), show the significance of Br···Br bonding synthons in influencing structures of crystalline materials and in use as potential building blocks in crystal engineering via supramolecular synthesis.