organic compounds
A redetermination of 2-(6-diethylamino-3-diethyliminio-3H-xanthen-9-yl)benzoate–ethyl gallate (1/1) at room temperature
aDepartment of Applied Physics, Graduate School of Engineering, Yokohama National University, Tokiwadai 79-5, Hodogaya-ku, Yokohama 240-8501, Japan
*Correspondence e-mail: mizu-j@ynu.ac.jp
The title compound, C28H30N2O3·C9H10O5, is a well known red leuco complex of 2-(6-diethylamino-3-diethyliminio-3H-xanthene-9-yl)benzoate (rhodamine B base abbreviated to RBB: leuco dye) with ethyl gallate (EG: developer). The structure of the complex at room temperature has recently been reported by Sekiguchi, Takayama, Gotanda & Sano [(2007) Chem. Lett. 36, 1010–1011]. The RBB–EG complex forms a dimer (RBB⋯EG⋯EG⋯RBB) through intermolecular O—H⋯O hydrogen bonds. In a subsequent re-examination of the structure at room temperature, we found the RBB molecule to be disordered with a methyl group of one ethyl substituent of a diethylamino group at one extremity of the xanthene unit disordered over two positions [occupancies: 0.735 (5)/0.265 (5)]. Furthermore, at the other end of the xanthene residue, the entire diethylamino substituent (i.e. the N atom and the associated C and H atoms) was also disordered over two sites with occupancies 0.653 (7)/0.347 (7). This leads to four kinds of RBB conformations, which, in turn, results in the formation of 16 discrete RBB⋯EG⋯EG⋯RBB dimers in the crystal.
Related literature
For the previous determination of the structure of the 1:1 RBB/EG complex at room temperature, see: Sekiguchi et al. (2007) and for the structure of a second triclinic form of the same complex at 93 K, see: Mizuguchi (2008). For the related structure of n-propyl gallate, see: Iwata et al. (2005); Hitachi et al. (2005).
Experimental
Crystal data
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Refinement
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Data collection: PROCESS-AUTO (Rigaku, 1998); cell PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC & Rigaku, 2006); program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996); software used to prepare material for publication: CrystalStructure.
Supporting information
10.1107/S160053680900751X/sj2586sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053680900751X/sj2586Isup2.hkl
Rhodamine B base and 4-hydroxybenzophenone were purchased from Sigma-Aldrich Corp. and Wako Pure Chemical Industries, Ltd., respectively. Single crystals of (I) were grown by recrystallization from a toluene solution which includes an equimolar quantity of both chemicals. After 24 h, a number of red crystals were obtained in the form of blocks.
The C28A and C28B methyl groups were disordered over two positions with occupancies of 0.735 (5)/0.265 (5), respectively. Also the disorder at N2 (i.e. N2A/N2B) extends to C23–C22–N2–C23–C24 and the associated H atoms. The occupancies for the N2A and N2B groups and their associated atoms are 0.653 (7) and 0.347 (7), respectively. All H atoms were placed in geometrically idealized position and constrained to ride on their parent atoms, with C—H = 0.93, 0.96, and 0.97 Å, and Uiso(H) = 1.2 and 1.5 Ueq(C), respectively, and with O—H = 0.82 Å and Uiso(H) = 1.2.
Data collection: PROCESS-AUTO (Rigaku, 1998); cell
PROCESS-AUTO (Rigaku, 1998); data reduction: CrystalStructure (Rigaku/MSC & Rigaku, 2006); program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996); software used to prepare material for publication: CrystalStructure (Rigaku/MSC & Rigaku, 2006).C28H30N2O3·C9H10O5 | Z = 2 |
Mr = 640.71 | F(000) = 680.00 |
Triclinic, P1 | Dx = 1.276 Mg m−3 |
Hall symbol: -P 1 | Cu Kα radiation, λ = 1.54187 Å |
a = 11.4721 (3) Å | Cell parameters from 10532 reflections |
b = 11.8036 (3) Å | θ = 3.0–68.5° |
c = 12.4816 (3) Å | µ = 0.74 mm−1 |
α = 85.805 (2)° | T = 296 K |
β = 87.202 (1)° | Block, red |
γ = 81.973 (1)° | 0.20 × 0.20 × 0.20 mm |
V = 1667.84 (7) Å3 |
Rigaku R-AXIS RAPID diffractometer | 3355 reflections with F2 > 2σ(F2) |
ω scans | Rint = 0.077 |
Absorption correction: multi-scan (Higashi, 1995) | θmax = 68.2° |
Tmin = 0.851, Tmax = 0.863 | h = −13→13 |
15046 measured reflections | k = −13→14 |
5610 independent reflections | l = −14→15 |
Refinement on F2 | 31 restraints |
R[F2 > 2σ(F2)] = 0.050 | H-atom parameters constrained |
wR(F2) = 0.141 | w = 1/[σ2(Fo2) + (0.0812P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.93 | (Δ/σ)max < 0.001 |
5610 reflections | Δρmax = 0.16 e Å−3 |
476 parameters | Δρmin = −0.19 e Å−3 |
C28H30N2O3·C9H10O5 | γ = 81.973 (1)° |
Mr = 640.71 | V = 1667.84 (7) Å3 |
Triclinic, P1 | Z = 2 |
a = 11.4721 (3) Å | Cu Kα radiation |
b = 11.8036 (3) Å | µ = 0.74 mm−1 |
c = 12.4816 (3) Å | T = 296 K |
α = 85.805 (2)° | 0.20 × 0.20 × 0.20 mm |
β = 87.202 (1)° |
Rigaku R-AXIS RAPID diffractometer | 5610 independent reflections |
Absorption correction: multi-scan (Higashi, 1995) | 3355 reflections with F2 > 2σ(F2) |
Tmin = 0.851, Tmax = 0.863 | Rint = 0.077 |
15046 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | 31 restraints |
wR(F2) = 0.141 | H-atom parameters constrained |
S = 0.93 | Δρmax = 0.16 e Å−3 |
5610 reflections | Δρmin = −0.19 e Å−3 |
476 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.62196 (11) | 0.41220 (11) | 0.45212 (10) | 0.0516 (3) | |
O2 | 0.57084 (12) | 0.69798 (13) | 0.66780 (12) | 0.0664 (4) | |
O3 | 0.60107 (12) | 0.76396 (14) | 0.82411 (12) | 0.0728 (5) | |
O4 | 0.21545 (15) | 0.78684 (15) | 1.01780 (12) | 0.0889 (6) | |
H4O | 0.1650 | 0.8183 | 1.0587 | 0.107* | |
O5 | 0.38741 (12) | 0.72981 (13) | 0.87434 (12) | 0.0768 (5) | |
H5O | 0.4509 | 0.7531 | 0.8609 | 0.092* | |
O6 | 0.37281 (12) | 0.83482 (12) | 0.65926 (11) | 0.0693 (5) | |
H6O | 0.4205 | 0.7806 | 0.6808 | 0.083* | |
O7 | −0.06957 (15) | 1.09897 (17) | 0.82505 (14) | 0.1034 (7) | |
O8 | 0.01167 (13) | 1.10673 (14) | 0.66131 (13) | 0.0808 (5) | |
N1 | 0.54396 (19) | 0.14504 (17) | 0.73818 (16) | 0.0812 (6) | |
C1 | 0.58390 (19) | 0.24391 (19) | 0.70248 (18) | 0.0604 (6) | |
C2 | 0.63447 (19) | 0.30991 (18) | 0.77375 (17) | 0.0611 (6) | |
H2 | 0.6350 | 0.2872 | 0.8467 | 0.073* | |
C3 | 0.68183 (18) | 0.40497 (18) | 0.73815 (16) | 0.0553 (5) | |
H3 | 0.7149 | 0.4456 | 0.7872 | 0.066* | |
C4 | 0.68265 (16) | 0.44474 (16) | 0.62802 (15) | 0.0462 (5) | |
C5 | 0.62725 (16) | 0.38095 (16) | 0.55992 (15) | 0.0463 (5) | |
C6 | 0.58048 (17) | 0.28344 (18) | 0.59322 (17) | 0.0556 (5) | |
H6 | 0.5466 | 0.2435 | 0.5442 | 0.067* | |
C7 | 0.67239 (16) | 0.50429 (16) | 0.40937 (16) | 0.0468 (5) | |
C8 | 0.66879 (18) | 0.52327 (18) | 0.29939 (16) | 0.0559 (5) | |
H8 | 0.6337 | 0.4751 | 0.2590 | 0.067* | |
C9 | 0.7186 (2) | 0.6162 (2) | 0.24908 (18) | 0.0715 (7) | |
C10 | 0.7693 (2) | 0.6883 (2) | 0.31501 (18) | 0.0724 (7) | |
H10 | 0.7999 | 0.7523 | 0.2835 | 0.087* | |
C11 | 0.77389 (19) | 0.66561 (19) | 0.42244 (17) | 0.0598 (6) | |
H11 | 0.8080 | 0.7143 | 0.4630 | 0.072* | |
C12 | 0.72836 (16) | 0.57016 (16) | 0.47512 (15) | 0.0459 (5) | |
C13 | 0.73447 (15) | 0.53923 (16) | 0.58585 (15) | 0.0442 (5) | |
C14 | 0.81034 (16) | 0.59702 (16) | 0.65346 (15) | 0.0470 (5) | |
C15 | 0.93057 (18) | 0.5612 (2) | 0.64624 (18) | 0.0638 (6) | |
H15 | 0.9598 | 0.5038 | 0.6009 | 0.077* | |
C16 | 1.0074 (2) | 0.6089 (2) | 0.7050 (2) | 0.0762 (7) | |
H16 | 1.0877 | 0.5830 | 0.7000 | 0.091* | |
C17 | 0.9652 (2) | 0.6951 (2) | 0.7711 (2) | 0.0738 (7) | |
H17 | 1.0170 | 0.7301 | 0.8085 | 0.089* | |
C18 | 0.84517 (19) | 0.72899 (19) | 0.78127 (18) | 0.0610 (6) | |
H18 | 0.8165 | 0.7854 | 0.8278 | 0.073* | |
C19 | 0.76644 (16) | 0.68071 (16) | 0.72356 (15) | 0.0456 (5) | |
C20 | 0.63599 (17) | 0.71751 (16) | 0.73885 (17) | 0.0507 (5) | |
N2A | 0.7055 (4) | 0.6508 (4) | 0.1419 (3) | 0.0667 (12) | 0.653 (7) |
C21A | 0.6481 (6) | 0.5815 (5) | 0.0733 (4) | 0.0907 (19) | 0.653 (7) |
H21A | 0.6120 | 0.6300 | 0.0144 | 0.109* | 0.653 (7) |
H21B | 0.5865 | 0.5474 | 0.1147 | 0.109* | 0.653 (7) |
C22A | 0.7368 (7) | 0.4881 (7) | 0.0290 (6) | 0.121 (3) | 0.653 (7) |
H22A | 0.6985 | 0.4446 | −0.0173 | 0.181* | 0.653 (7) |
H22B | 0.7701 | 0.4383 | 0.0872 | 0.181* | 0.653 (7) |
H22C | 0.7982 | 0.5218 | −0.0112 | 0.181* | 0.653 (7) |
C23A | 0.7631 (5) | 0.7444 (5) | 0.0886 (5) | 0.0845 (18) | 0.653 (7) |
H23A | 0.7451 | 0.8113 | 0.1302 | 0.101* | 0.653 (7) |
H23B | 0.7306 | 0.7641 | 0.0183 | 0.101* | 0.653 (7) |
C24A | 0.8941 (6) | 0.7159 (9) | 0.0753 (6) | 0.119 (3) | 0.653 (7) |
H24A | 0.9263 | 0.7806 | 0.0405 | 0.179* | 0.653 (7) |
H24B | 0.9128 | 0.6512 | 0.0322 | 0.179* | 0.653 (7) |
H24C | 0.9273 | 0.6976 | 0.1446 | 0.179* | 0.653 (7) |
N2B | 0.7578 (9) | 0.6057 (7) | 0.1399 (5) | 0.067 (2) | 0.347 (7) |
C21B | 0.7208 (8) | 0.5243 (11) | 0.0689 (8) | 0.070 (3) | 0.347 (7) |
H21C | 0.7341 | 0.4489 | 0.1063 | 0.084* | 0.347 (7) |
H21D | 0.7742 | 0.5225 | 0.0062 | 0.084* | 0.347 (7) |
C22B | 0.5970 (7) | 0.5395 (8) | 0.0285 (7) | 0.083 (3) | 0.347 (7) |
H22D | 0.5889 | 0.4783 | −0.0160 | 0.124* | 0.347 (7) |
H22E | 0.5821 | 0.6116 | −0.0127 | 0.124* | 0.347 (7) |
H22F | 0.5415 | 0.5383 | 0.0885 | 0.124* | 0.347 (7) |
C23B | 0.8235 (11) | 0.6926 (10) | 0.0826 (10) | 0.097 (4) | 0.347 (7) |
H23C | 0.8078 | 0.7636 | 0.1186 | 0.116* | 0.347 (7) |
H23D | 0.7968 | 0.7078 | 0.0097 | 0.116* | 0.347 (7) |
C24B | 0.9536 (10) | 0.6518 (13) | 0.0797 (12) | 0.119 (3) | 0.347 (7) |
H24D | 0.9947 | 0.7101 | 0.0439 | 0.179* | 0.347 (7) |
H24E | 0.9695 | 0.5832 | 0.0416 | 0.179* | 0.347 (7) |
H24F | 0.9798 | 0.6360 | 0.1518 | 0.179* | 0.347 (7) |
C25 | 0.5100 (3) | 0.0666 (2) | 0.6627 (3) | 0.0976 (9) | |
H25A | 0.4601 | 0.1105 | 0.6096 | 0.117* | |
H25B | 0.4642 | 0.0128 | 0.7018 | 0.117* | |
C26 | 0.6126 (3) | 0.0012 (2) | 0.6064 (2) | 0.1088 (10) | |
H26A | 0.5863 | −0.0588 | 0.5697 | 0.163* | |
H26B | 0.6693 | −0.0318 | 0.6579 | 0.163* | |
H26C | 0.6482 | 0.0519 | 0.5552 | 0.163* | |
C27 | 0.5405 (3) | 0.1044 (3) | 0.8530 (2) | 0.1106 (11) | |
H27A | 0.5321 | 0.1708 | 0.8956 | 0.133* | 0.735 (5) |
H27B | 0.4704 | 0.0674 | 0.8674 | 0.133* | 0.735 (5) |
H27C | 0.5688 | 0.0229 | 0.8592 | 0.133* | 0.265 (5) |
H27D | 0.5939 | 0.1429 | 0.8907 | 0.133* | 0.265 (5) |
C28A | 0.6391 (4) | 0.0270 (3) | 0.8895 (4) | 0.1142 (17) | 0.735 (5) |
H28A | 0.6298 | 0.0102 | 0.9656 | 0.171* | 0.735 (5) |
H28B | 0.7098 | 0.0612 | 0.8741 | 0.171* | 0.735 (5) |
H28C | 0.6443 | −0.0427 | 0.8533 | 0.171* | 0.735 (5) |
C28B | 0.4273 (9) | 0.1232 (10) | 0.9041 (10) | 0.122 (4) | 0.265 (5) |
H28D | 0.4288 | 0.0834 | 0.9740 | 0.183* | 0.265 (5) |
H28E | 0.3713 | 0.0951 | 0.8616 | 0.183* | 0.265 (5) |
H28F | 0.4050 | 0.2038 | 0.9113 | 0.183* | 0.265 (5) |
C29 | 0.11073 (17) | 0.97922 (17) | 0.78864 (17) | 0.0535 (5) | |
C30 | 0.11491 (18) | 0.92607 (19) | 0.89144 (17) | 0.0615 (6) | |
H30 | 0.0550 | 0.9460 | 0.9423 | 0.074* | |
C31 | 0.20825 (19) | 0.84344 (19) | 0.91795 (17) | 0.0594 (6) | |
C32 | 0.29921 (17) | 0.81247 (17) | 0.84399 (17) | 0.0535 (5) | |
C33 | 0.29226 (16) | 0.86332 (17) | 0.73917 (16) | 0.0507 (5) | |
C34 | 0.19940 (16) | 0.94763 (17) | 0.71342 (16) | 0.0533 (5) | |
H34 | 0.1967 | 0.9834 | 0.6445 | 0.064* | |
C35 | 0.00929 (19) | 1.0669 (2) | 0.76249 (19) | 0.0658 (6) | |
C36 | −0.0881 (2) | 1.1878 (3) | 0.6247 (2) | 0.1044 (10) | |
H36A | −0.1612 | 1.1623 | 0.6524 | 0.125* | |
H36B | −0.0840 | 1.2626 | 0.6506 | 0.125* | |
C37 | −0.0845 (3) | 1.1951 (3) | 0.5094 (3) | 0.1308 (13) | |
H37A | −0.1495 | 1.2489 | 0.4839 | 0.196* | |
H37B | −0.0898 | 1.1210 | 0.4844 | 0.196* | |
H37C | −0.0119 | 1.2202 | 0.4826 | 0.196* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0572 (8) | 0.0526 (8) | 0.0461 (8) | −0.0103 (6) | −0.0067 (6) | −0.0016 (6) |
O2 | 0.0483 (8) | 0.0812 (11) | 0.0693 (10) | 0.0075 (7) | −0.0122 (7) | −0.0277 (8) |
O3 | 0.0586 (9) | 0.0995 (12) | 0.0594 (10) | 0.0023 (8) | 0.0045 (7) | −0.0285 (9) |
O4 | 0.0873 (11) | 0.1121 (14) | 0.0514 (10) | 0.0240 (10) | 0.0129 (8) | 0.0185 (9) |
O5 | 0.0579 (9) | 0.0789 (11) | 0.0819 (12) | 0.0115 (8) | 0.0084 (8) | 0.0248 (9) |
O6 | 0.0639 (9) | 0.0755 (10) | 0.0580 (9) | 0.0156 (8) | 0.0159 (7) | 0.0057 (8) |
O7 | 0.0816 (12) | 0.1408 (17) | 0.0679 (12) | 0.0465 (11) | 0.0147 (10) | −0.0040 (11) |
O8 | 0.0677 (10) | 0.0974 (12) | 0.0635 (10) | 0.0285 (9) | 0.0027 (8) | 0.0085 (9) |
N1 | 0.1076 (16) | 0.0714 (13) | 0.0693 (14) | −0.0378 (12) | −0.0053 (12) | 0.0142 (11) |
C1 | 0.0624 (13) | 0.0581 (14) | 0.0593 (14) | −0.0089 (11) | 0.0006 (11) | 0.0053 (11) |
C2 | 0.0745 (14) | 0.0618 (14) | 0.0446 (13) | −0.0062 (11) | −0.0027 (11) | 0.0065 (11) |
C3 | 0.0637 (13) | 0.0564 (13) | 0.0442 (12) | −0.0016 (10) | −0.0041 (10) | −0.0028 (10) |
C4 | 0.0453 (10) | 0.0487 (11) | 0.0422 (11) | 0.0017 (9) | −0.0034 (9) | −0.0007 (9) |
C5 | 0.0455 (10) | 0.0500 (12) | 0.0407 (11) | 0.0009 (9) | −0.0009 (8) | 0.0000 (9) |
C6 | 0.0595 (12) | 0.0565 (13) | 0.0514 (13) | −0.0103 (10) | −0.0053 (10) | −0.0006 (10) |
C7 | 0.0456 (11) | 0.0470 (11) | 0.0462 (12) | −0.0011 (9) | −0.0038 (9) | −0.0017 (9) |
C8 | 0.0634 (13) | 0.0644 (14) | 0.0414 (12) | −0.0134 (11) | −0.0086 (10) | −0.0015 (10) |
C9 | 0.0893 (17) | 0.0864 (17) | 0.0431 (13) | −0.0308 (14) | −0.0096 (12) | 0.0078 (12) |
C10 | 0.0964 (18) | 0.0740 (16) | 0.0514 (14) | −0.0331 (14) | −0.0072 (13) | 0.0085 (12) |
C11 | 0.0689 (14) | 0.0618 (14) | 0.0512 (13) | −0.0166 (11) | −0.0084 (11) | −0.0010 (11) |
C12 | 0.0472 (10) | 0.0467 (11) | 0.0435 (11) | −0.0035 (9) | −0.0044 (9) | −0.0046 (9) |
C13 | 0.0432 (10) | 0.0481 (11) | 0.0386 (10) | 0.0042 (8) | −0.0018 (8) | −0.0055 (9) |
C14 | 0.0451 (11) | 0.0527 (12) | 0.0423 (11) | −0.0038 (9) | −0.0050 (9) | 0.0002 (9) |
C15 | 0.0498 (12) | 0.0821 (16) | 0.0573 (14) | 0.0034 (11) | −0.0027 (10) | −0.0132 (12) |
C16 | 0.0457 (12) | 0.111 (2) | 0.0716 (17) | −0.0057 (13) | −0.0079 (12) | −0.0113 (16) |
C17 | 0.0582 (14) | 0.103 (2) | 0.0649 (15) | −0.0214 (13) | −0.0135 (12) | −0.0110 (15) |
C18 | 0.0638 (14) | 0.0689 (14) | 0.0523 (13) | −0.0112 (11) | −0.0035 (11) | −0.0126 (11) |
C19 | 0.0480 (11) | 0.0495 (11) | 0.0393 (10) | −0.0065 (9) | −0.0025 (9) | −0.0030 (9) |
C20 | 0.0513 (12) | 0.0477 (12) | 0.0514 (12) | −0.0010 (9) | 0.0001 (10) | −0.0042 (10) |
N2A | 0.087 (3) | 0.074 (3) | 0.0399 (19) | −0.015 (2) | −0.0150 (19) | 0.0078 (18) |
C21A | 0.116 (5) | 0.106 (4) | 0.050 (3) | −0.020 (4) | −0.006 (3) | 0.008 (3) |
C22A | 0.168 (6) | 0.107 (6) | 0.094 (6) | −0.040 (4) | 0.016 (5) | −0.021 (4) |
C23A | 0.114 (4) | 0.085 (4) | 0.056 (3) | −0.028 (3) | −0.007 (3) | 0.016 (3) |
C24A | 0.120 (7) | 0.146 (9) | 0.101 (3) | −0.052 (5) | 0.003 (5) | −0.004 (5) |
N2B | 0.090 (6) | 0.066 (5) | 0.046 (4) | −0.022 (4) | −0.014 (4) | 0.015 (4) |
C21B | 0.085 (7) | 0.087 (10) | 0.043 (6) | −0.032 (6) | 0.006 (5) | −0.014 (5) |
C22B | 0.101 (6) | 0.084 (6) | 0.066 (5) | −0.021 (5) | −0.039 (5) | 0.008 (4) |
C23B | 0.158 (16) | 0.084 (8) | 0.053 (5) | −0.037 (9) | −0.018 (9) | 0.012 (6) |
C24B | 0.120 (7) | 0.146 (9) | 0.101 (3) | −0.052 (5) | 0.003 (5) | −0.004 (5) |
C25 | 0.124 (2) | 0.0791 (19) | 0.098 (2) | −0.0515 (19) | −0.0053 (19) | 0.0119 (17) |
C26 | 0.159 (3) | 0.077 (2) | 0.092 (2) | −0.027 (2) | −0.011 (2) | 0.0052 (17) |
C27 | 0.143 (3) | 0.094 (2) | 0.099 (2) | −0.049 (2) | −0.018 (2) | 0.0329 (18) |
C28A | 0.146 (4) | 0.089 (3) | 0.110 (3) | −0.024 (3) | −0.024 (3) | 0.005 (2) |
C28B | 0.161 (8) | 0.109 (7) | 0.098 (7) | −0.044 (7) | 0.026 (6) | 0.013 (6) |
C29 | 0.0500 (11) | 0.0600 (13) | 0.0489 (12) | 0.0002 (10) | 0.0000 (9) | −0.0086 (10) |
C30 | 0.0558 (12) | 0.0769 (15) | 0.0477 (12) | 0.0038 (11) | 0.0059 (10) | −0.0054 (11) |
C31 | 0.0634 (13) | 0.0677 (14) | 0.0435 (12) | −0.0005 (11) | 0.0020 (10) | 0.0022 (11) |
C32 | 0.0482 (11) | 0.0532 (12) | 0.0563 (13) | −0.0010 (9) | 0.0014 (10) | 0.0023 (10) |
C33 | 0.0462 (11) | 0.0538 (12) | 0.0503 (12) | −0.0046 (9) | 0.0071 (9) | −0.0020 (10) |
C34 | 0.0518 (11) | 0.0583 (13) | 0.0468 (12) | 0.0007 (10) | 0.0009 (9) | −0.0010 (10) |
C35 | 0.0577 (13) | 0.0800 (16) | 0.0551 (14) | 0.0073 (12) | 0.0006 (11) | −0.0075 (12) |
C36 | 0.0872 (19) | 0.120 (2) | 0.088 (2) | 0.0448 (17) | −0.0106 (16) | 0.0104 (18) |
C37 | 0.108 (2) | 0.176 (3) | 0.091 (2) | 0.039 (2) | −0.019 (2) | 0.011 (2) |
O1—C7 | 1.364 (2) | C22A—H22B | 0.9600 |
O1—C5 | 1.371 (2) | C22A—H22C | 0.9600 |
O2—C20 | 1.241 (2) | C23A—C24A | 1.498 (6) |
O3—C20 | 1.255 (2) | C23A—H23A | 0.9700 |
O4—C31 | 1.371 (2) | C23A—H23B | 0.9700 |
O4—H4O | 0.8200 | C24A—H24A | 0.9600 |
O5—C32 | 1.352 (2) | C24A—H24B | 0.9600 |
O5—H5O | 0.8200 | C24A—H24C | 0.9600 |
O6—C33 | 1.354 (2) | N2B—C21B | 1.471 (7) |
O6—H6O | 0.8200 | N2B—C23B | 1.478 (7) |
O7—C35 | 1.204 (2) | C21B—C22B | 1.513 (8) |
O8—C35 | 1.315 (3) | C21B—H21C | 0.9700 |
O8—C36 | 1.455 (3) | C21B—H21D | 0.9700 |
N1—C1 | 1.350 (3) | C22B—H22D | 0.9600 |
N1—C25 | 1.470 (3) | C22B—H22E | 0.9600 |
N1—C27 | 1.479 (3) | C22B—H22F | 0.9600 |
C1—C6 | 1.409 (3) | C23B—C24B | 1.503 (9) |
C1—C2 | 1.419 (3) | C23B—H23C | 0.9700 |
C2—C3 | 1.351 (3) | C23B—H23D | 0.9700 |
C2—H2 | 0.9300 | C24B—H24D | 0.9600 |
C3—C4 | 1.420 (3) | C24B—H24E | 0.9600 |
C3—H3 | 0.9300 | C24B—H24F | 0.9600 |
C4—C13 | 1.394 (3) | C25—C26 | 1.490 (4) |
C4—C5 | 1.405 (3) | C25—H25A | 0.9700 |
C5—C6 | 1.366 (3) | C25—H25B | 0.9700 |
C6—H6 | 0.9300 | C26—H26A | 0.9600 |
C7—C8 | 1.376 (3) | C26—H26B | 0.9600 |
C7—C12 | 1.405 (3) | C26—H26C | 0.9600 |
C8—C9 | 1.401 (3) | C27—C28B | 1.415 (8) |
C8—H8 | 0.9300 | C27—C28A | 1.422 (4) |
C9—N2A | 1.379 (4) | C27—H27A | 0.9700 |
C9—N2B | 1.423 (6) | C27—H27B | 0.9700 |
C9—C10 | 1.424 (3) | C27—H27C | 0.9700 |
C10—C11 | 1.350 (3) | C27—H27D | 0.9700 |
C10—H10 | 0.9300 | C28A—H28A | 0.9600 |
C11—C12 | 1.413 (3) | C28A—H28B | 0.9600 |
C11—H11 | 0.9300 | C28A—H28C | 0.9600 |
C12—C13 | 1.406 (3) | C28B—H28D | 0.9600 |
C13—C14 | 1.502 (3) | C28B—H28E | 0.9600 |
C14—C15 | 1.386 (3) | C28B—H28F | 0.9600 |
C14—C19 | 1.393 (3) | C29—C34 | 1.381 (3) |
C15—C16 | 1.376 (3) | C29—C30 | 1.386 (3) |
C15—H15 | 0.9300 | C29—C35 | 1.477 (3) |
C16—C17 | 1.377 (3) | C30—C31 | 1.380 (3) |
C16—H16 | 0.9300 | C30—H30 | 0.9300 |
C17—C18 | 1.382 (3) | C31—C32 | 1.387 (3) |
C17—H17 | 0.9300 | C32—C33 | 1.400 (3) |
C18—C19 | 1.388 (3) | C33—C34 | 1.385 (3) |
C18—H18 | 0.9300 | C34—H34 | 0.9300 |
C19—C20 | 1.506 (3) | C36—C37 | 1.435 (4) |
N2A—C21A | 1.465 (5) | C36—H36A | 0.9700 |
N2A—C23A | 1.467 (5) | C36—H36B | 0.9700 |
C21A—C22A | 1.509 (6) | C37—H37A | 0.9600 |
C21A—H21A | 0.9700 | C37—H37B | 0.9600 |
C21A—H21B | 0.9700 | C37—H37C | 0.9600 |
C22A—H22A | 0.9600 | ||
O2···O6 | 2.5991 (18) | N2A···C28Bii | 2.914 (11) |
O3···O5 | 2.579 (2) | C22B···C22Biii | 2.676 (12) |
O4···O7i | 2.811 (2) | C23A···C28Bii | 2.504 (11) |
O5···O3 | 2.579 (2) | C28B···N2Aii | 2.914 (11) |
O6···O2 | 2.5991 (18) | C28B···C23Aii | 2.504 (11) |
O7···O4i | 2.811 (2) | ||
C7—O1—C5 | 120.40 (16) | N2B—C21B—C22B | 121.2 (12) |
C31—O4—H4O | 109.5 | N2B—C21B—H21C | 107.0 |
C32—O5—H5O | 109.5 | C22B—C21B—H21C | 107.0 |
C33—O6—H6O | 109.5 | N2B—C21B—H21D | 107.0 |
C35—O8—C36 | 117.74 (19) | C22B—C21B—H21D | 107.0 |
C1—N1—C25 | 121.1 (2) | H21C—C21B—H21D | 106.8 |
C1—N1—C27 | 122.9 (2) | C21B—C22B—H22D | 109.5 |
C25—N1—C27 | 115.9 (2) | C21B—C22B—H22E | 109.5 |
N1—C1—C6 | 121.6 (2) | H22D—C22B—H22E | 109.5 |
N1—C1—C2 | 120.8 (2) | C21B—C22B—H22F | 109.5 |
C6—C1—C2 | 117.6 (2) | H22D—C22B—H22F | 109.5 |
C3—C2—C1 | 121.5 (2) | H22E—C22B—H22F | 109.5 |
C3—C2—H2 | 119.2 | N2B—C23B—C24B | 110.8 (8) |
C1—C2—H2 | 119.2 | N2B—C23B—H23C | 109.5 |
C2—C3—C4 | 121.9 (2) | C24B—C23B—H23C | 109.5 |
C2—C3—H3 | 119.0 | N2B—C23B—H23D | 109.5 |
C4—C3—H3 | 119.0 | C24B—C23B—H23D | 109.5 |
C13—C4—C5 | 120.04 (17) | H23C—C23B—H23D | 108.1 |
C13—C4—C3 | 124.57 (19) | C23B—C24B—H24D | 109.5 |
C5—C4—C3 | 115.39 (18) | C23B—C24B—H24E | 109.5 |
C6—C5—O1 | 115.64 (18) | H24D—C24B—H24E | 109.5 |
C6—C5—C4 | 123.93 (18) | C23B—C24B—H24F | 109.5 |
O1—C5—C4 | 120.37 (17) | H24D—C24B—H24F | 109.5 |
C5—C6—C1 | 119.5 (2) | H24E—C24B—H24F | 109.5 |
C5—C6—H6 | 120.3 | N1—C25—C26 | 113.4 (2) |
C1—C6—H6 | 120.3 | N1—C25—H25A | 108.9 |
O1—C7—C8 | 115.50 (18) | C26—C25—H25A | 108.9 |
O1—C7—C12 | 120.75 (17) | N1—C25—H25B | 108.9 |
C8—C7—C12 | 123.68 (19) | C26—C25—H25B | 108.9 |
C7—C8—C9 | 119.1 (2) | H25A—C25—H25B | 107.7 |
C7—C8—H8 | 120.4 | C25—C26—H26A | 109.5 |
C9—C8—H8 | 120.4 | C25—C26—H26B | 109.5 |
N2A—C9—C8 | 123.0 (3) | H26A—C26—H26B | 109.5 |
C8—C9—N2B | 116.2 (3) | C25—C26—H26C | 109.5 |
N2A—C9—C10 | 118.2 (3) | H26A—C26—H26C | 109.5 |
C8—C9—C10 | 118.1 (2) | H26B—C26—H26C | 109.5 |
N2B—C9—C10 | 120.7 (4) | C28B—C27—C28A | 127.0 (6) |
C11—C10—C9 | 121.2 (2) | C28B—C27—N1 | 114.1 (6) |
C11—C10—H10 | 119.4 | C28A—C27—N1 | 116.6 (3) |
C9—C10—H10 | 119.4 | C28B—C27—H27A | 68.6 |
C10—C11—C12 | 122.0 (2) | C28A—C27—H27A | 108.1 |
C10—C11—H11 | 119.0 | N1—C27—H27A | 108.1 |
C12—C11—H11 | 119.0 | C28A—C27—H27B | 108.1 |
C7—C12—C13 | 119.51 (18) | N1—C27—H27B | 108.1 |
C7—C12—C11 | 115.67 (18) | H27A—C27—H27B | 107.3 |
C13—C12—C11 | 124.82 (19) | C28B—C27—H27C | 108.7 |
C4—C13—C12 | 118.90 (18) | N1—C27—H27C | 108.7 |
C4—C13—C14 | 120.76 (16) | H27A—C27—H27C | 140.0 |
C12—C13—C14 | 119.77 (17) | H27B—C27—H27C | 74.9 |
C15—C14—C19 | 119.29 (19) | C28B—C27—H27D | 108.7 |
C15—C14—C13 | 116.78 (18) | C28A—C27—H27D | 68.4 |
C19—C14—C13 | 123.91 (16) | N1—C27—H27D | 108.7 |
C16—C15—C14 | 121.2 (2) | H27B—C27—H27D | 139.7 |
C16—C15—H15 | 119.4 | H27C—C27—H27D | 107.6 |
C14—C15—H15 | 119.4 | C27—C28A—H28A | 109.5 |
C15—C16—C17 | 119.9 (2) | C27—C28A—H28B | 109.5 |
C15—C16—H16 | 120.1 | H28A—C28A—H28B | 109.5 |
C17—C16—H16 | 120.1 | C27—C28A—H28C | 109.5 |
C16—C17—C18 | 119.3 (2) | H28A—C28A—H28C | 109.5 |
C16—C17—H17 | 120.3 | H28B—C28A—H28C | 109.5 |
C18—C17—H17 | 120.3 | C27—C28B—H28D | 109.5 |
C17—C18—C19 | 121.4 (2) | C27—C28B—H28E | 109.5 |
C17—C18—H18 | 119.3 | H28D—C28B—H28E | 109.5 |
C19—C18—H18 | 119.3 | C27—C28B—H28F | 109.5 |
C18—C19—C14 | 118.84 (18) | H28D—C28B—H28F | 109.5 |
C18—C19—C20 | 119.97 (18) | H28E—C28B—H28F | 109.5 |
C14—C19—C20 | 121.18 (18) | C34—C29—C30 | 119.53 (19) |
O2—C20—O3 | 124.83 (19) | C34—C29—C35 | 122.0 (2) |
O2—C20—C19 | 118.03 (18) | C30—C29—C35 | 118.48 (19) |
O3—C20—C19 | 117.13 (19) | C31—C30—C29 | 119.74 (19) |
C9—N2A—C21A | 119.5 (4) | C31—C30—H30 | 120.1 |
C9—N2A—C23A | 122.6 (4) | C29—C30—H30 | 120.1 |
C21A—N2A—C23A | 117.2 (4) | O4—C31—C30 | 122.02 (19) |
N2A—C21A—C22A | 110.3 (7) | O4—C31—C32 | 116.56 (19) |
N2A—C21A—H21A | 109.6 | C30—C31—C32 | 121.4 (2) |
C22A—C21A—H21A | 109.6 | O5—C32—C31 | 118.64 (19) |
N2A—C21A—H21B | 109.6 | O5—C32—C33 | 122.70 (18) |
C22A—C21A—H21B | 109.6 | C31—C32—C33 | 118.55 (18) |
H21A—C21A—H21B | 108.1 | O6—C33—C34 | 116.86 (18) |
C21A—C22A—H22A | 109.5 | O6—C33—C32 | 123.40 (18) |
C21A—C22A—H22B | 109.5 | C34—C33—C32 | 119.75 (18) |
H22A—C22A—H22B | 109.5 | C29—C34—C33 | 120.9 (2) |
C21A—C22A—H22C | 109.5 | C29—C34—H34 | 119.5 |
H22A—C22A—H22C | 109.5 | C33—C34—H34 | 119.5 |
H22B—C22A—H22C | 109.5 | O7—C35—O8 | 122.1 (2) |
N2A—C23A—C24A | 113.7 (5) | O7—C35—C29 | 124.9 (2) |
N2A—C23A—H23A | 108.8 | O8—C35—C29 | 112.99 (19) |
C24A—C23A—H23A | 108.8 | C37—C36—O8 | 108.5 (2) |
N2A—C23A—H23B | 108.8 | C37—C36—H36A | 110.0 |
C24A—C23A—H23B | 108.8 | O8—C36—H36A | 110.0 |
H23A—C23A—H23B | 107.7 | C37—C36—H36B | 110.0 |
C23A—C24A—H24A | 109.5 | O8—C36—H36B | 110.0 |
C23A—C24A—H24B | 109.5 | H36A—C36—H36B | 108.4 |
H24A—C24A—H24B | 109.5 | C36—C37—H37A | 109.5 |
C23A—C24A—H24C | 109.5 | C36—C37—H37B | 109.5 |
H24A—C24A—H24C | 109.5 | H37A—C37—H37B | 109.5 |
H24B—C24A—H24C | 109.5 | C36—C37—H37C | 109.5 |
C9—N2B—C21B | 124.8 (7) | H37A—C37—H37C | 109.5 |
C9—N2B—C23B | 120.8 (7) | H37B—C37—H37C | 109.5 |
C21B—N2B—C23B | 113.6 (8) |
Symmetry codes: (i) −x, −y+2, −z+2; (ii) −x+1, −y+1, −z+1; (iii) −x+1, −y+1, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4O···O7i | 0.82 | 2.00 | 2.811 (2) | 168 |
O5—H5O···O2 | 0.82 | 2.79 | 3.257 (2) | 118 |
O5—H5O···O3 | 0.82 | 1.78 | 2.579 (2) | 164 |
O6—H6O···O2 | 0.82 | 1.86 | 2.5991 (18) | 148 |
O6—H6O···O3 | 0.82 | 2.78 | 3.3842 (19) | 132 |
O6—H6O···O5 | 0.82 | 2.47 | 2.8758 (19) | 112 |
Symmetry code: (i) −x, −y+2, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C28H30N2O3·C9H10O5 |
Mr | 640.71 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 11.4721 (3), 11.8036 (3), 12.4816 (3) |
α, β, γ (°) | 85.805 (2), 87.202 (1), 81.973 (1) |
V (Å3) | 1667.84 (7) |
Z | 2 |
Radiation type | Cu Kα |
µ (mm−1) | 0.74 |
Crystal size (mm) | 0.20 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPID diffractometer |
Absorption correction | Multi-scan (Higashi, 1995) |
Tmin, Tmax | 0.851, 0.863 |
No. of measured, independent and observed [F2 > 2σ(F2)] reflections | 15046, 5610, 3355 |
Rint | 0.077 |
(sin θ/λ)max (Å−1) | 0.602 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.141, 0.93 |
No. of reflections | 5610 |
No. of parameters | 476 |
No. of restraints | 31 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.16, −0.19 |
Computer programs: PROCESS-AUTO (Rigaku, 1998), CrystalStructure (Rigaku/MSC & Rigaku, 2006), SIR2004 (Burla et al., 2005), SHELXL97 (Sheldrick, 2008), ORTEPIII (Burnett & Johnson, 1996), CrystalStructure (Rigaku/MSC & Rigaku, 2006).
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4O···O7i | 0.820 | 2.000 | 2.811 (2) | 168.4 |
O5—H5O···O2 | 0.820 | 2.789 | 3.257 (2) | 118.1 |
O5—H5O···O3 | 0.820 | 1.780 | 2.579 (2) | 164.3 |
O6—H6O···O2 | 0.820 | 1.860 | 2.5991 (18) | 148.4 |
O6—H6O···O3 | 0.820 | 2.780 | 3.3842 (19) | 132.1 |
O6—H6O···O5 | 0.820 | 2.4700 | 2.8758 (19) | 111.7 |
Symmetry code: (i) −x, −y+2, −z+2. |
Acknowledgements
The authors express their sincere thanks to Mr H. Shima for experimental assistance.
References
Burla, M. C., Caliandro, R., Camalli, M., Carrozzini, B., Cascarano, G. L., De Caro, L., Giacovazzo, C., Polidori, G. & Spagna, R. (2005). J. Appl. Cryst. 38, 381-388. Web of Science CrossRef CAS IUCr Journals Google Scholar
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title compound, C28H30N2O3.C9H10O5, is a well known red leuco complex of 2-(6-diethylamino-3-diethyliminio-3H-xanthene-9-yl)benzoate with ethyl gallate (rhodamine B base abbreviated to RBB: leuco dye) with ethyl gallate (EG: developer). The structure of the RBB/EG complex at room temperature has recently been reported by Sekiguchi et al. (2007), where the RBB conformation is uniquely RBB-A as shown schematically in Fig. 1a. That is, the ethyl groups of the xanthene diethylamino substituents lie on the same side of the xanthene plane in RBB-A. Quite recently, we have also found a new triclinic phase with two discrete base/developer complexes (RBB-A/EG-A and RBB-B/EG-B: see Fig. 1a) at 93 K (Mizuguchi, 2008). In both phases, two RBBs are connected by a sub-dimer of EG through intermolecular O—H···O hydrogen bonds. However, close inspection of the supplementary CIF of the report of Sekiguchi et al. (2007) revealed that there was a residual electron density peak of about 1.35 e Å-3. For this reason, a redetermination of the structure has been carried out at room temperature in the present investigation. This revealed that the RBB molecule is disordered as shown in Fig. 1b with the C28 methyl group of one ethyl substituent of the N1 diethylamino group at one extremity of the xanthene moiety as well as the entire diethylamino-substituent (i.e. N2 atom with the associated C and H atoms) at the other end of the xanthene unit disordered over two positions.
As shown in Fig. 1b, the RBB molecule is disordered at C28A/C28B together with their associated H atoms at one extremity of the xanthene moiety. The disordered structure is separated into the major (0.735 (5)) and minor (0.265 (5)) components which correspond to the RBB-A and RBB-B forms respectively, as shown in Fig. 1a. These are similar to those found at 93K, where the diethylamino-substituents lie either on the same side, or on opposite sides of the xanthene plane. Similarly, the disorder at the entire N2 diethylamino-substituents at the other end of the xanthene plane also leads to the presence of the two conformations described above: N2A group (diethylamino-substituents on the same side; occupancy 0.653 (7)) and N2B group (on opposite sides; occupancy 0.347 (7)). Figs. 2–5 show plots of the four possible structures of (I). Of these, the previous report (Sekiguchi et al., 2007) only identified the conformation shown in Fig. 2.
The lactone ring is opened to form a zwitterionic structure and the benzene ring with the carboxylate is twisted to be nearly perpendicular to the xanthene plane with a dihedral angle of 98.9 (1)° between the O1/C1—C13 plane of the xanthene and the C14—C19 plane of the benzene ring. The xanthene moiety is nearly flat (mean deviation from the least-squares plane, 0.0300 Å).
There are intra and intermolecular O—H···O hydrogen bonds leading to the formation of the RBB/EG complexes as shown in Fig. 6. For example, two major RBB/EG complexes are further connected by intermolecular O—H···O hydrogen bonds between two EGs to form a dimer as shown in Fig. 7. The existence of the four possible RBB conformations leads to the formation of 16 kinds of RBB···EG···EG···RBB dimers in the crystal. The formation of the EG dimer is similar to that found in n-propyl gallate (Iwata et al., 2005; Hitachi et al., 2005).