metal-organic compounds
Low-temperature rerefinement of nonmerohedrally twinned tripyridinium bis[tetrabromidoferrate(III)] bromide
aDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: seikweng@um.edu.my
The 5H6N)3[FeBr4]2Br, consists of three pyridinium cations, two tetrahedral bromidoferrate(III) anions and a bromide anion. The three cations each form one N—H⋯Br hydrogen bond to the bromide anion. The crystal under investigation was a non-merohedral twin, with a portion of 22% for the minor twin component.
of the title double salt, (CRelated literature
The authors of the original room-temperature study noted et al. (1994).
but the program then could not take this into consideration; see: LoweExperimental
Crystal data
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Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2009).
Supporting information
10.1107/S1600536809007090/tk2380sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809007090/tk2380Isup2.hkl
The crystals were provided by Dr. Nasser Safari of Shahid Beheshti University. Pyridine (2.2 ml, 25 mmol) was added to a solution of ferric bromide (1.25 g, 4.23 mmol) dissolved in a mixture of 1.2 M hydrobromic acid and 2.4 M acetic acid (20 ml). The red solution was set aside for two weeks, after which crystals separated out.
The
initally converged to an R1 value of 0.088, but there were large peaks/deep holes. The crystal is in fact a nonmerohedral twin. The law, as given by PLATON (Spek, 2003), is (-1 0 0, 0 - 1 0, 0.323 0 1). The with an approximate twin component of 22%, halved the R1 index. The affected the anisotropic temperature factors of the carbon and nitrogen atoms; these were restrained to be nearly isotropic.Carbon- and nitrogen-bound H-atoms were placed in calculated positions (C–H 0.95, N–H 0.88 Å) and were included in the
in the riding model approximation, with U(H) set to 1.2U(C,N).The final difference Fourier map had large peaks/holes in the vicinity of the bromide atoms.
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2009).(C5H6N)3[FeBr4]2Br | F(000) = 992 |
Mr = 1071.21 | Dx = 2.487 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 8983 reflections |
a = 7.5602 (1) Å | θ = 2.7–28.3° |
b = 14.0125 (2) Å | µ = 13.59 mm−1 |
c = 13.5609 (2) Å | T = 123 K |
β = 95.172 (1)° | Irregular block, brown |
V = 1430.76 (3) Å3 | 0.30 × 0.25 × 0.20 mm |
Z = 2 |
Bruker SMART APEX diffractometer | 6460 independent reflections |
Radiation source: fine-focus sealed tube | 6006 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.038 |
ω scans | θmax = 27.5°, θmin = 1.5° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −9→9 |
Tmin = 0.098, Tmax = 0.154 | k = −18→18 |
13428 measured reflections | l = −17→17 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.043 | H-atom parameters constrained |
wR(F2) = 0.106 | w = 1/[σ2(Fo2) + (0.0502P)2 + 4.7139P] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max = 0.001 |
6460 reflections | Δρmax = 1.29 e Å−3 |
263 parameters | Δρmin = −1.71 e Å−3 |
109 restraints | Absolute structure: Flack (1983), 3046 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.10 (2) |
(C5H6N)3[FeBr4]2Br | V = 1430.76 (3) Å3 |
Mr = 1071.21 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 7.5602 (1) Å | µ = 13.59 mm−1 |
b = 14.0125 (2) Å | T = 123 K |
c = 13.5609 (2) Å | 0.30 × 0.25 × 0.20 mm |
β = 95.172 (1)° |
Bruker SMART APEX diffractometer | 6460 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 6006 reflections with I > 2σ(I) |
Tmin = 0.098, Tmax = 0.154 | Rint = 0.038 |
13428 measured reflections |
R[F2 > 2σ(F2)] = 0.043 | H-atom parameters constrained |
wR(F2) = 0.106 | Δρmax = 1.29 e Å−3 |
S = 1.07 | Δρmin = −1.71 e Å−3 |
6460 reflections | Absolute structure: Flack (1983), 3046 Friedel pairs |
263 parameters | Absolute structure parameter: 0.10 (2) |
109 restraints |
x | y | z | Uiso*/Ueq | ||
Br1 | 0.27784 (12) | 0.49992 (6) | 0.74070 (6) | 0.02428 (19) | |
Br2 | 0.27108 (13) | 0.35971 (6) | 0.50468 (7) | 0.0250 (2) | |
Br3 | 0.02833 (11) | 0.60181 (6) | 0.50814 (7) | 0.02457 (19) | |
Br4 | 0.52742 (11) | 0.59765 (7) | 0.52624 (7) | 0.0268 (2) | |
Br5 | 0.52708 (11) | 0.89250 (6) | 0.95876 (7) | 0.02335 (19) | |
Br6 | 0.75284 (12) | 1.00789 (7) | 0.74713 (6) | 0.02522 (19) | |
Br7 | 1.02585 (12) | 0.91096 (8) | 0.97548 (8) | 0.0356 (3) | |
Br8 | 0.74006 (15) | 1.13935 (7) | 0.98802 (7) | 0.0350 (2) | |
Br9 | 0.74762 (11) | 0.65558 (7) | 0.83903 (6) | 0.02359 (19) | |
Fe1 | 0.27879 (15) | 0.51483 (9) | 0.56879 (9) | 0.0177 (2) | |
Fe2 | 0.76356 (16) | 0.98860 (9) | 0.91855 (9) | 0.0197 (3) | |
N1 | 0.7426 (11) | 0.4395 (6) | 0.7619 (7) | 0.038 (2) | |
H1 | 0.7427 | 0.4931 | 0.7959 | 0.045* | |
N2 | 0.7876 (12) | 0.7029 (7) | 1.0778 (6) | 0.0343 (19) | |
H2 | 0.7993 | 0.7233 | 1.0173 | 0.041* | |
N3 | 0.3634 (10) | 0.7457 (5) | 0.7543 (5) | 0.0203 (15) | |
H3 | 0.4324 | 0.7032 | 0.7863 | 0.024* | |
C1 | 0.8048 (15) | 0.4412 (10) | 0.6741 (9) | 0.047 (3) | |
H1A | 0.8457 | 0.4988 | 0.6470 | 0.056* | |
C2 | 0.8080 (17) | 0.3569 (11) | 0.6239 (9) | 0.054 (3) | |
H2A | 0.8582 | 0.3549 | 0.5622 | 0.065* | |
C3 | 0.7408 (16) | 0.2758 (9) | 0.6606 (10) | 0.048 (3) | |
H3A | 0.7363 | 0.2182 | 0.6234 | 0.058* | |
C4 | 0.6797 (14) | 0.2790 (8) | 0.7523 (9) | 0.038 (2) | |
H4 | 0.6371 | 0.2226 | 0.7810 | 0.046* | |
C5 | 0.6802 (15) | 0.3618 (9) | 0.8016 (7) | 0.038 (2) | |
H5 | 0.6357 | 0.3647 | 0.8649 | 0.046* | |
C6 | 0.7428 (14) | 0.6150 (8) | 1.0919 (7) | 0.035 (2) | |
H6 | 0.7246 | 0.5738 | 1.0363 | 0.042* | |
C7 | 0.7210 (16) | 0.5797 (8) | 1.1832 (9) | 0.041 (3) | |
H7 | 0.6873 | 0.5151 | 1.1919 | 0.049* | |
C8 | 0.7500 (12) | 0.6418 (8) | 1.2642 (7) | 0.032 (2) | |
H8 | 0.7361 | 0.6199 | 1.3294 | 0.039* | |
C9 | 0.7984 (14) | 0.7340 (8) | 1.2482 (7) | 0.035 (2) | |
H9 | 0.8192 | 0.7771 | 1.3021 | 0.042* | |
C10 | 0.8163 (16) | 0.7633 (7) | 1.1548 (8) | 0.039 (2) | |
H10 | 0.8497 | 0.8274 | 1.1433 | 0.047* | |
C11 | 0.1903 (12) | 0.7447 (6) | 0.7669 (6) | 0.0208 (17) | |
H11 | 0.1435 | 0.6989 | 0.8092 | 0.025* | |
C12 | 0.0815 (12) | 0.8104 (7) | 0.7182 (6) | 0.0260 (18) | |
H12 | −0.0420 | 0.8102 | 0.7262 | 0.031* | |
C13 | 0.1503 (13) | 0.8766 (6) | 0.6576 (7) | 0.0256 (19) | |
H13 | 0.0757 | 0.9231 | 0.6241 | 0.031* | |
C14 | 0.3330 (13) | 0.8744 (6) | 0.6459 (7) | 0.0260 (19) | |
H14 | 0.3831 | 0.9190 | 0.6035 | 0.031* | |
C15 | 0.4375 (12) | 0.8082 (7) | 0.6956 (7) | 0.0269 (19) | |
H15 | 0.5614 | 0.8062 | 0.6888 | 0.032* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0313 (4) | 0.0211 (4) | 0.0195 (4) | −0.0010 (4) | −0.0025 (3) | −0.0005 (3) |
Br2 | 0.0325 (5) | 0.0188 (4) | 0.0241 (4) | −0.0009 (4) | 0.0039 (4) | −0.0032 (3) |
Br3 | 0.0164 (4) | 0.0285 (5) | 0.0285 (4) | 0.0046 (4) | 0.0009 (3) | 0.0077 (4) |
Br4 | 0.0168 (4) | 0.0268 (5) | 0.0369 (5) | −0.0041 (4) | 0.0030 (3) | 0.0016 (4) |
Br5 | 0.0181 (4) | 0.0236 (4) | 0.0286 (4) | −0.0015 (3) | 0.0038 (3) | 0.0022 (3) |
Br6 | 0.0311 (4) | 0.0272 (4) | 0.0175 (4) | 0.0014 (4) | 0.0031 (3) | 0.0012 (4) |
Br7 | 0.0186 (4) | 0.0520 (7) | 0.0356 (5) | 0.0033 (4) | −0.0007 (4) | 0.0137 (5) |
Br8 | 0.0507 (6) | 0.0292 (6) | 0.0246 (5) | −0.0099 (5) | 0.0008 (4) | −0.0090 (4) |
Br9 | 0.0204 (4) | 0.0272 (5) | 0.0225 (4) | 0.0047 (4) | −0.0019 (3) | −0.0033 (3) |
Fe1 | 0.0153 (5) | 0.0167 (6) | 0.0206 (6) | 0.0002 (5) | −0.0005 (4) | −0.0003 (5) |
Fe2 | 0.0186 (5) | 0.0230 (6) | 0.0173 (6) | −0.0020 (5) | 0.0003 (4) | 0.0008 (5) |
N1 | 0.025 (4) | 0.030 (4) | 0.056 (5) | 0.003 (3) | −0.013 (4) | −0.012 (4) |
N2 | 0.038 (4) | 0.043 (5) | 0.023 (4) | 0.011 (4) | 0.010 (3) | 0.009 (3) |
N3 | 0.020 (3) | 0.019 (3) | 0.021 (3) | −0.002 (3) | −0.006 (3) | 0.002 (3) |
C1 | 0.030 (5) | 0.055 (6) | 0.055 (6) | −0.009 (5) | −0.004 (4) | 0.028 (5) |
C2 | 0.042 (6) | 0.083 (8) | 0.038 (5) | 0.003 (6) | 0.009 (5) | 0.000 (6) |
C3 | 0.040 (5) | 0.047 (6) | 0.056 (6) | 0.008 (5) | −0.005 (5) | −0.021 (5) |
C4 | 0.028 (5) | 0.028 (5) | 0.055 (6) | −0.007 (4) | −0.013 (4) | 0.016 (4) |
C5 | 0.036 (5) | 0.058 (6) | 0.021 (4) | 0.001 (5) | 0.005 (4) | −0.002 (4) |
C6 | 0.043 (5) | 0.035 (5) | 0.024 (4) | 0.013 (4) | −0.011 (4) | −0.005 (4) |
C7 | 0.044 (5) | 0.026 (5) | 0.051 (6) | −0.013 (4) | −0.009 (5) | 0.005 (4) |
C8 | 0.028 (4) | 0.045 (5) | 0.024 (4) | 0.000 (4) | −0.001 (3) | 0.010 (4) |
C9 | 0.037 (5) | 0.039 (5) | 0.029 (5) | −0.002 (4) | 0.004 (4) | −0.013 (4) |
C10 | 0.049 (5) | 0.022 (4) | 0.048 (5) | 0.002 (4) | 0.010 (5) | 0.001 (4) |
C11 | 0.023 (4) | 0.019 (4) | 0.021 (4) | −0.002 (3) | 0.004 (3) | −0.001 (3) |
C12 | 0.023 (4) | 0.031 (4) | 0.025 (4) | 0.001 (4) | 0.004 (3) | −0.004 (3) |
C13 | 0.027 (4) | 0.020 (4) | 0.029 (4) | 0.008 (4) | 0.001 (3) | 0.005 (3) |
C14 | 0.028 (4) | 0.020 (4) | 0.031 (4) | −0.010 (3) | 0.008 (4) | 0.005 (3) |
C15 | 0.021 (4) | 0.032 (4) | 0.028 (4) | −0.007 (4) | −0.003 (3) | −0.003 (4) |
Br1—Fe1 | 2.341 (2) | C3—H3A | 0.9500 |
Br2—Fe1 | 2.340 (2) | C4—C5 | 1.340 (16) |
Br3—Fe1 | 2.338 (1) | C4—H4 | 0.9500 |
Br4—Fe1 | 2.326 (1) | C5—H5 | 0.9500 |
Br5—Fe2 | 2.342 (1) | C6—C7 | 1.357 (15) |
Br6—Fe2 | 2.335 (1) | C6—H6 | 0.9500 |
Br7—Fe2 | 2.331 (2) | C7—C8 | 1.404 (15) |
Br8—Fe2 | 2.326 (2) | C7—H7 | 0.9500 |
N1—C1 | 1.319 (15) | C8—C9 | 1.366 (15) |
N1—C5 | 1.320 (15) | C8—H8 | 0.9500 |
N1—H1 | 0.8800 | C9—C10 | 1.349 (15) |
N2—C6 | 1.296 (14) | C9—H9 | 0.9500 |
N2—C10 | 1.347 (14) | C10—H10 | 0.9500 |
N2—H2 | 0.8800 | C11—C12 | 1.364 (13) |
N3—C11 | 1.335 (11) | C11—H11 | 0.9500 |
N3—C15 | 1.340 (12) | C12—C13 | 1.372 (13) |
N3—H3 | 0.8800 | C12—H12 | 0.9500 |
C1—C2 | 1.36 (2) | C13—C14 | 1.405 (13) |
C1—H1A | 0.9500 | C13—H13 | 0.9500 |
C2—C3 | 1.357 (19) | C14—C15 | 1.358 (13) |
C2—H2A | 0.9500 | C14—H14 | 0.9500 |
C3—C4 | 1.366 (17) | C15—H15 | 0.9500 |
Br4—Fe1—Br3 | 107.44 (6) | N1—C5—C4 | 119.7 (9) |
Br4—Fe1—Br2 | 111.41 (6) | N1—C5—H5 | 120.2 |
Br3—Fe1—Br2 | 111.18 (6) | C4—C5—H5 | 120.2 |
Br4—Fe1—Br1 | 111.51 (6) | N2—C6—C7 | 122.4 (10) |
Br3—Fe1—Br1 | 108.77 (6) | N2—C6—H6 | 118.8 |
Br2—Fe1—Br1 | 106.55 (6) | C7—C6—H6 | 118.8 |
Br8—Fe2—Br7 | 112.54 (6) | C6—C7—C8 | 117.7 (10) |
Br8—Fe2—Br6 | 107.52 (6) | C6—C7—H7 | 121.1 |
Br7—Fe2—Br6 | 109.63 (6) | C8—C7—H7 | 121.1 |
Br8—Fe2—Br5 | 109.89 (6) | C9—C8—C7 | 119.1 (9) |
Br7—Fe2—Br5 | 107.40 (6) | C9—C8—H8 | 120.4 |
Br6—Fe2—Br5 | 109.86 (6) | C7—C8—H8 | 120.4 |
C1—N1—C5 | 123.5 (10) | C10—C9—C8 | 119.2 (10) |
C1—N1—H1 | 118.2 | C10—C9—H9 | 120.4 |
C5—N1—H1 | 118.2 | C8—C9—H9 | 120.4 |
C6—N2—C10 | 120.6 (9) | N2—C10—C9 | 121.0 (10) |
C6—N2—H2 | 119.7 | N2—C10—H10 | 119.5 |
C10—N2—H2 | 119.7 | C9—C10—H10 | 119.5 |
C11—N3—C15 | 123.4 (8) | N3—C11—C12 | 119.1 (8) |
C11—N3—H3 | 118.3 | N3—C11—H11 | 120.4 |
C15—N3—H3 | 118.3 | C12—C11—H11 | 120.4 |
N1—C1—C2 | 117.3 (11) | C11—C12—C13 | 120.1 (8) |
N1—C1—H1A | 121.4 | C11—C12—H12 | 120.0 |
C2—C1—H1A | 121.4 | C13—C12—H12 | 120.0 |
C3—C2—C1 | 121.2 (11) | C12—C13—C14 | 118.9 (8) |
C3—C2—H2A | 119.4 | C12—C13—H13 | 120.6 |
C1—C2—H2A | 119.4 | C14—C13—H13 | 120.6 |
C2—C3—C4 | 118.3 (11) | C15—C14—C13 | 119.5 (8) |
C2—C3—H3A | 120.8 | C15—C14—H14 | 120.3 |
C4—C3—H3A | 120.8 | C13—C14—H14 | 120.3 |
C5—C4—C3 | 119.8 (10) | N3—C15—C14 | 119.1 (8) |
C5—C4—H4 | 120.1 | N3—C15—H15 | 120.5 |
C3—C4—H4 | 120.1 | C14—C15—H15 | 120.5 |
C5—N1—C1—C2 | −1.8 (17) | C7—C8—C9—C10 | 0.3 (17) |
N1—C1—C2—C3 | 3.5 (19) | C6—N2—C10—C9 | −0.3 (17) |
C1—C2—C3—C4 | −4.1 (19) | C8—C9—C10—N2 | −0.2 (17) |
C2—C3—C4—C5 | 2.9 (18) | C15—N3—C11—C12 | −0.2 (13) |
C1—N1—C5—C4 | 0.6 (17) | N3—C11—C12—C13 | −0.3 (13) |
C3—C4—C5—N1 | −1.2 (17) | C11—C12—C13—C14 | 0.9 (14) |
C10—N2—C6—C7 | 0.7 (16) | C12—C13—C14—C15 | −1.0 (14) |
N2—C6—C7—C8 | −0.5 (17) | C11—N3—C15—C14 | 0.1 (13) |
C6—C7—C8—C9 | 0.0 (16) | C13—C14—C15—N3 | 0.5 (14) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···Br9 | 0.88 | 2.35 | 3.202 (9) | 163 |
N2—H2···Br9 | 0.88 | 2.59 | 3.292 (8) | 137 |
N3—H3···Br9 | 0.88 | 2.52 | 3.279 (7) | 146 |
Experimental details
Crystal data | |
Chemical formula | (C5H6N)3[FeBr4]2Br |
Mr | 1071.21 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 123 |
a, b, c (Å) | 7.5602 (1), 14.0125 (2), 13.5609 (2) |
β (°) | 95.172 (1) |
V (Å3) | 1430.76 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 13.59 |
Crystal size (mm) | 0.30 × 0.25 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART APEX diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.098, 0.154 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13428, 6460, 6006 |
Rint | 0.038 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.106, 1.07 |
No. of reflections | 6460 |
No. of parameters | 263 |
No. of restraints | 109 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 1.29, −1.71 |
Absolute structure | Flack (1983), 3046 Friedel pairs |
Absolute structure parameter | 0.10 (2) |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009), X-SEED (Barbour, 2001), publCIF (Westrip, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···Br9 | 0.88 | 2.35 | 3.202 (9) | 163 |
N2—H2···Br9 | 0.88 | 2.59 | 3.292 (8) | 137 |
N3—H3···Br9 | 0.88 | 2.52 | 3.279 (7) | 146 |
Acknowledgements
The author thanks the University of Malaya for supporting this study.
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