organic compounds
Ethyl 4-(2,4-difluorophenyl)-6-methyl-2-oxo-1,2,3,4-tetrahydropyrimidine-5-carboxylate
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bDepartment of Studies in Chemistry, Mangalore University, Mangalagangotri, Mangalore 574 199, India
*Correspondence e-mail: hkfun@usm.my
In the title compound, C14H14F2N2O3, the dihydropyrimidinone ring adopts a flattened boat conformation. The difluorophenyl group is disordered over two orientations with occupancies of 0.544 (3) and 0.456 (3). The methoxycarbonyl group is disordered over two positions with occupancies of 0.580 (8) and 0.420 (8). In the crystal, molecules are linked into centrosymmetric dimers by paired N—H⋯O hydrogen bonds and the dimers are linked into a ribbon-like structure along [100] by further N—H⋯O hydrogen bonds.
Related literature
For general background and pharmaceutical applications of pyrimidinones, see: Kalluraya & Rai (2003); Atwal (1990); Sadanandam et al. (1992); Steele et al. (1998); Manjula et al. (2004). For bond-length data, see: Allen et al. (1987). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536809015918/ci2792sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809015918/ci2792Isup2.hkl
A mixture of 2,4-difluoro benzaldehyde (0.01 mol), ethyl acetoacetate (0.015 mol), thiourea (0.01 mol) and conc. H2SO4 (2 drops) in absolute alcohol (10 ml) taken in a beaker (100 ml) was zapped inside a microwave oven for 3 min at 160 Watt (i.e. 25% MW power). The reaction mixture was then allowed to stand at room temperature and the product formed was filtered, washed with ethanol followed by water and dried. Further purification was done by recrystallisation from ethanol. Single crystals suitable for X-ray analysis were obtained from ethanol by slow evaporation.
Atoms H1N1 and H1N2 were located in a difference Fourier map and refined freely. The remaining H atoms were positioned geometrically and refined using a riding model, with C-H = 0.93–0.98 Å and Uiso(H) = 1.2-1.5 Ueq(C). A rotating-group model was applied for the methyl group. The difluorophenyl group is disordered over two positions with occupancies of 0.544 (3) and 0.456 (3). The caboxylate methyl group is also disordered over two positions with occupancies of 0.580 (8) and 0.420 (8). For the disordered difluorophenyl group, the same Uij parameters were used for atom pairs F1A/F1B, C1A/C1B, and C5A/C5B, and all disordered atoms were subjected to a rigid bond restraint.
Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C14H14F2N2O3 | Z = 2 |
Mr = 296.27 | F(000) = 308 |
Triclinic, P1 | Dx = 1.466 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.5176 (1) Å | Cell parameters from 7927 reflections |
b = 8.0483 (1) Å | θ = 2.7–34.4° |
c = 11.9323 (2) Å | µ = 0.12 mm−1 |
α = 90.147 (1)° | T = 100 K |
β = 100.839 (1)° | Plate, colourless |
γ = 108.421 (1)° | 0.43 × 0.32 × 0.13 mm |
V = 671.25 (2) Å3 |
Bruker SMART APEXII CCD area-detector diffractometer | 3075 independent reflections |
Radiation source: fine-focus sealed tube | 2703 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.028 |
ϕ and ω scans | θmax = 27.5°, θmin = 2.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −9→9 |
Tmin = 0.949, Tmax = 0.985 | k = −10→10 |
17515 measured reflections | l = −15→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.068 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.173 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0607P)2 + 0.8775P] where P = (Fo2 + 2Fc2)/3 |
3075 reflections | (Δ/σ)max = 0.001 |
266 parameters | Δρmax = 0.66 e Å−3 |
45 restraints | Δρmin = −0.84 e Å−3 |
C14H14F2N2O3 | γ = 108.421 (1)° |
Mr = 296.27 | V = 671.25 (2) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.5176 (1) Å | Mo Kα radiation |
b = 8.0483 (1) Å | µ = 0.12 mm−1 |
c = 11.9323 (2) Å | T = 100 K |
α = 90.147 (1)° | 0.43 × 0.32 × 0.13 mm |
β = 100.839 (1)° |
Bruker SMART APEXII CCD area-detector diffractometer | 3075 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 2703 reflections with I > 2σ(I) |
Tmin = 0.949, Tmax = 0.985 | Rint = 0.028 |
17515 measured reflections |
R[F2 > 2σ(F2)] = 0.068 | 45 restraints |
wR(F2) = 0.173 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | Δρmax = 0.66 e Å−3 |
3075 reflections | Δρmin = −0.84 e Å−3 |
266 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
F1A | 0.7550 (6) | 0.3028 (5) | 0.3410 (3) | 0.0598 (8) | 0.544 (3) |
F1B | 0.8268 (7) | 0.8571 (6) | 0.2813 (4) | 0.0598 (8) | 0.456 (3) |
O1 | 0.3876 (2) | 0.1588 (2) | 0.01956 (16) | 0.0352 (4) | |
O2 | 1.2723 (2) | 0.5461 (2) | 0.14780 (15) | 0.0298 (4) | |
O3 | 1.1456 (2) | 0.7375 (2) | 0.20789 (18) | 0.0428 (5) | |
N1 | 0.5906 (2) | 0.4172 (2) | 0.10712 (14) | 0.0207 (4) | |
N2 | 0.7014 (2) | 0.1862 (2) | 0.07956 (16) | 0.0234 (4) | |
F2A | 0.7967 (7) | 0.7696 (9) | 0.6102 (3) | 0.0959 (19) | 0.544 (3) |
C1A | 0.7750 (7) | 0.4770 (8) | 0.3704 (4) | 0.0279 (8) | 0.544 (3) |
C2A | 0.7792 (9) | 0.5355 (13) | 0.4811 (5) | 0.0557 (19) | 0.544 (3) |
H2AA | 0.7719 | 0.4586 | 0.5394 | 0.067* | 0.544 (3) |
C3A | 0.7941 (12) | 0.7054 (15) | 0.5035 (6) | 0.061 (2) | 0.544 (3) |
C4A | 0.8048 (8) | 0.8278 (10) | 0.4216 (5) | 0.0520 (16) | 0.544 (3) |
H4AA | 0.8131 | 0.9433 | 0.4381 | 0.062* | 0.544 (3) |
C5A | 0.8022 (7) | 0.7640 (8) | 0.3129 (5) | 0.0332 (10) | 0.544 (3) |
H5AA | 0.8107 | 0.8423 | 0.2554 | 0.040* | 0.544 (3) |
C6A | 0.788 (3) | 0.5949 (12) | 0.2835 (7) | 0.0180 (17) | 0.544 (3) |
F2B | 0.7660 (6) | 0.6163 (6) | 0.6323 (2) | 0.0479 (11) | 0.456 (3) |
C1B | 0.8051 (8) | 0.7153 (9) | 0.3476 (5) | 0.0279 (8) | 0.456 (3) |
C2B | 0.8046 (11) | 0.7414 (8) | 0.4604 (6) | 0.0255 (14) | 0.456 (3) |
H2BA | 0.8265 | 0.8519 | 0.4945 | 0.031* | 0.456 (3) |
C3B | 0.7694 (10) | 0.5921 (9) | 0.5204 (5) | 0.0275 (13) | 0.456 (3) |
C4B | 0.7384 (11) | 0.4271 (8) | 0.4734 (5) | 0.0345 (14) | 0.456 (3) |
H4BA | 0.7125 | 0.3326 | 0.5193 | 0.041* | 0.456 (3) |
C5B | 0.7443 (9) | 0.3954 (11) | 0.3573 (5) | 0.0332 (10) | 0.456 (3) |
H5BA | 0.7301 | 0.2853 | 0.3256 | 0.040* | 0.456 (3) |
C6B | 0.774 (3) | 0.5502 (15) | 0.2934 (11) | 0.025 (3) | 0.456 (3) |
C7 | 0.7793 (3) | 0.5371 (3) | 0.16198 (16) | 0.0182 (4) | |
H7A | 0.7995 | 0.6433 | 0.1195 | 0.022* | 0.580 (8) |
H7B | 0.7985 | 0.6385 | 0.1178 | 0.022* | 0.420 (8) |
C8 | 0.5505 (3) | 0.2516 (3) | 0.06653 (18) | 0.0234 (4) | |
C9 | 0.8906 (3) | 0.2904 (3) | 0.11002 (16) | 0.0197 (4) | |
C10 | 0.9344 (3) | 0.4608 (3) | 0.14452 (15) | 0.0179 (4) | |
C11 | 1.1330 (3) | 0.5786 (3) | 0.16561 (16) | 0.0198 (4) | |
C12 | 1.3361 (4) | 0.8646 (4) | 0.2385 (3) | 0.0541 (9) | |
H12A | 1.3717 | 0.9251 | 0.1718 | 0.065* | 0.580 (8) |
H12B | 1.4283 | 0.8057 | 0.2670 | 0.065* | 0.580 (8) |
H12C | 1.4223 | 0.8259 | 0.2019 | 0.065* | 0.420 (8) |
H12D | 1.3332 | 0.9763 | 0.2093 | 0.065* | 0.420 (8) |
C13A | 1.3350 (6) | 0.9926 (6) | 0.3285 (4) | 0.0367 (13) | 0.580 (8) |
H13A | 1.4629 | 1.0700 | 0.3559 | 0.055* | 0.580 (8) |
H13B | 1.2866 | 0.9305 | 0.3908 | 0.055* | 0.580 (8) |
H13C | 1.2546 | 1.0599 | 0.2970 | 0.055* | 0.580 (8) |
C13B | 1.4024 (9) | 0.8870 (8) | 0.3480 (5) | 0.0355 (17) | 0.420 (8) |
H13D | 1.4307 | 0.7841 | 0.3750 | 0.053* | 0.420 (8) |
H13E | 1.3085 | 0.9070 | 0.3861 | 0.053* | 0.420 (8) |
H13F | 1.5170 | 0.9866 | 0.3640 | 0.053* | 0.420 (8) |
C14 | 1.0280 (3) | 0.1943 (3) | 0.09888 (19) | 0.0242 (4) | |
H14A | 1.1389 | 0.2365 | 0.1591 | 0.036* | |
H14B | 1.0657 | 0.2138 | 0.0262 | 0.036* | |
H14C | 0.9676 | 0.0710 | 0.1042 | 0.036* | |
H1N1 | 0.493 (4) | 0.458 (4) | 0.105 (2) | 0.034 (7)* | |
H1N2 | 0.674 (4) | 0.081 (4) | 0.052 (2) | 0.035 (7)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F1A | 0.078 (2) | 0.0668 (19) | 0.0584 (16) | 0.0393 (16) | 0.0423 (15) | 0.0248 (14) |
F1B | 0.078 (2) | 0.0668 (19) | 0.0584 (16) | 0.0393 (16) | 0.0423 (15) | 0.0248 (14) |
O1 | 0.0139 (7) | 0.0315 (8) | 0.0586 (11) | 0.0057 (6) | 0.0059 (7) | −0.0174 (8) |
O2 | 0.0166 (7) | 0.0307 (8) | 0.0447 (9) | 0.0085 (6) | 0.0107 (6) | 0.0018 (7) |
O3 | 0.0160 (8) | 0.0346 (9) | 0.0721 (13) | −0.0006 (7) | 0.0104 (8) | −0.0262 (9) |
N1 | 0.0141 (8) | 0.0243 (9) | 0.0253 (8) | 0.0088 (7) | 0.0032 (6) | −0.0036 (7) |
N2 | 0.0160 (8) | 0.0206 (8) | 0.0350 (10) | 0.0063 (7) | 0.0081 (7) | −0.0045 (7) |
F2A | 0.081 (3) | 0.165 (5) | 0.0359 (19) | 0.034 (3) | 0.0086 (18) | −0.043 (3) |
C1A | 0.0253 (17) | 0.047 (2) | 0.0141 (15) | 0.0144 (16) | 0.0068 (12) | 0.0079 (16) |
C2A | 0.039 (3) | 0.102 (6) | 0.023 (3) | 0.018 (4) | 0.008 (2) | 0.002 (4) |
C3A | 0.039 (3) | 0.112 (7) | 0.026 (4) | 0.018 (5) | 0.003 (3) | −0.023 (4) |
C4A | 0.030 (3) | 0.071 (4) | 0.049 (3) | 0.012 (3) | 0.002 (2) | −0.039 (3) |
C5A | 0.0261 (18) | 0.051 (3) | 0.0162 (16) | 0.0024 (17) | 0.0063 (13) | −0.0106 (19) |
C6A | 0.010 (3) | 0.031 (5) | 0.012 (2) | 0.004 (4) | 0.0039 (16) | −0.003 (2) |
F2B | 0.079 (3) | 0.073 (3) | 0.0113 (13) | 0.051 (2) | 0.0125 (14) | 0.0029 (15) |
C1B | 0.0253 (17) | 0.047 (2) | 0.0141 (15) | 0.0144 (16) | 0.0068 (12) | 0.0079 (16) |
C2B | 0.040 (3) | 0.017 (2) | 0.025 (3) | 0.019 (2) | 0.002 (3) | −0.002 (2) |
C3B | 0.041 (3) | 0.036 (3) | 0.015 (3) | 0.023 (3) | 0.008 (2) | 0.005 (2) |
C4B | 0.058 (4) | 0.028 (3) | 0.028 (3) | 0.023 (3) | 0.016 (3) | 0.011 (2) |
C5B | 0.0261 (18) | 0.051 (3) | 0.0162 (16) | 0.0024 (17) | 0.0063 (13) | −0.0106 (19) |
C6B | 0.016 (4) | 0.025 (5) | 0.036 (5) | 0.008 (5) | 0.005 (3) | −0.005 (3) |
C7 | 0.0150 (9) | 0.0218 (9) | 0.0189 (9) | 0.0073 (7) | 0.0039 (7) | −0.0009 (7) |
C8 | 0.0159 (9) | 0.0252 (10) | 0.0304 (10) | 0.0067 (8) | 0.0080 (8) | −0.0038 (8) |
C9 | 0.0156 (9) | 0.0262 (10) | 0.0196 (9) | 0.0084 (8) | 0.0062 (7) | 0.0020 (7) |
C10 | 0.0144 (9) | 0.0250 (10) | 0.0159 (8) | 0.0081 (7) | 0.0043 (7) | 0.0012 (7) |
C11 | 0.0173 (9) | 0.0269 (10) | 0.0162 (8) | 0.0082 (8) | 0.0041 (7) | 0.0013 (7) |
C12 | 0.0205 (12) | 0.0508 (17) | 0.078 (2) | −0.0088 (11) | 0.0148 (13) | −0.0355 (15) |
C13A | 0.033 (2) | 0.028 (2) | 0.042 (2) | 0.0054 (17) | −0.0014 (18) | −0.0057 (17) |
C13B | 0.032 (3) | 0.035 (3) | 0.034 (3) | 0.007 (2) | −0.001 (2) | −0.006 (2) |
C14 | 0.0198 (10) | 0.0261 (10) | 0.0308 (11) | 0.0112 (8) | 0.0085 (8) | 0.0002 (8) |
F1A—C1A | 1.398 (6) | C3B—C4B | 1.373 (8) |
F1B—C1B | 1.375 (7) | C4B—C5B | 1.418 (8) |
O1—C8 | 1.238 (3) | C4B—H4BA | 0.93 |
O2—C11 | 1.211 (2) | C5B—C6B | 1.441 (12) |
O3—C11 | 1.342 (3) | C5B—H5BA | 0.93 |
O3—C12 | 1.451 (3) | C6B—C7 | 1.579 (12) |
N1—C8 | 1.337 (3) | C7—C10 | 1.524 (3) |
N1—C7 | 1.468 (2) | C7—H7A | 0.98 |
N1—H1N1 | 0.89 (3) | C7—H7B | 0.96 |
N2—C8 | 1.379 (3) | C9—C10 | 1.349 (3) |
N2—C9 | 1.382 (3) | C9—C14 | 1.496 (3) |
N2—H1N2 | 0.86 (3) | C10—C11 | 1.467 (3) |
F2A—C3A | 1.367 (7) | C12—C13B | 1.299 (7) |
C1A—C2A | 1.392 (8) | C12—C13A | 1.490 (5) |
C1A—C6A | 1.404 (9) | C12—H12A | 0.97 |
C2A—C3A | 1.358 (11) | C12—H12B | 0.97 |
C2A—H2AA | 0.93 | C12—H12C | 0.97 |
C3A—C4A | 1.384 (11) | C12—H12D | 0.97 |
C4A—C5A | 1.388 (7) | C13A—H12D | 1.4259 |
C4A—H4AA | 0.93 | C13A—H13A | 0.96 |
C5A—C6A | 1.371 (11) | C13A—H13B | 0.96 |
C5A—H5AA | 0.93 | C13A—H13C | 0.96 |
C6A—C7 | 1.505 (8) | C13B—H13D | 0.96 |
F2B—C3B | 1.355 (6) | C13B—H13E | 0.96 |
C1B—C2B | 1.362 (8) | C13B—H13F | 0.96 |
C1B—C6B | 1.409 (12) | C14—H14A | 0.96 |
C2B—C3B | 1.378 (7) | C14—H14B | 0.96 |
C2B—H2BA | 0.93 | C14—H14C | 0.96 |
C11—O3—C12 | 116.68 (18) | C10—C7—H7B | 104.8 |
C8—N1—C7 | 126.65 (17) | C6B—C7—H7B | 121.4 |
C8—N1—H1N1 | 117.3 (18) | O1—C8—N1 | 123.06 (19) |
C7—N1—H1N1 | 115.9 (18) | O1—C8—N2 | 120.41 (19) |
C8—N2—C9 | 123.28 (18) | N1—C8—N2 | 116.53 (18) |
C8—N2—H1N2 | 115 (2) | C10—C9—N2 | 119.93 (18) |
C9—N2—H1N2 | 120 (2) | C10—C9—C14 | 126.95 (18) |
C2A—C1A—F1A | 122.6 (6) | N2—C9—C14 | 113.12 (17) |
C2A—C1A—C6A | 119.6 (7) | C9—C10—C11 | 120.89 (17) |
F1A—C1A—C6A | 117.9 (5) | C9—C10—C7 | 121.08 (17) |
C3A—C2A—C1A | 119.6 (6) | C11—C10—C7 | 118.04 (17) |
C3A—C2A—H2AA | 120.2 | O2—C11—O3 | 121.61 (18) |
C1A—C2A—H2AA | 120.2 | O2—C11—C10 | 127.53 (19) |
C2A—C3A—F2A | 122.2 (8) | O3—C11—C10 | 110.85 (16) |
C2A—C3A—C4A | 123.8 (6) | C13B—C12—O3 | 113.2 (4) |
F2A—C3A—C4A | 114.0 (8) | C13B—C12—C13A | 46.9 (3) |
C3A—C4A—C5A | 114.5 (6) | O3—C12—C13A | 108.3 (3) |
C3A—C4A—H4AA | 122.7 | C13B—C12—H12A | 135.7 |
C5A—C4A—H4AA | 122.7 | O3—C12—H12A | 110.0 |
C6A—C5A—C4A | 125.2 (7) | C13A—C12—H12A | 110.0 |
C6A—C5A—H5AA | 117.4 | C13B—C12—H12B | 64.7 |
C4A—C5A—H5AA | 117.4 | O3—C12—H12B | 110.0 |
C5A—C6A—C1A | 117.2 (6) | C13A—C12—H12B | 110.0 |
C5A—C6A—C7 | 121.1 (7) | H12A—C12—H12B | 108.4 |
C1A—C6A—C7 | 121.6 (7) | C13B—C12—H12C | 108.9 |
C2B—C1B—F1B | 118.1 (6) | O3—C12—H12C | 108.9 |
C2B—C1B—C6B | 124.0 (7) | C13A—C12—H12C | 141.9 |
F1B—C1B—C6B | 117.9 (6) | H12A—C12—H12C | 63.9 |
C1B—C2B—C3B | 115.2 (5) | H12B—C12—H12C | 48.0 |
C1B—C2B—H2BA | 122.4 | C13B—C12—H12D | 109.0 |
C3B—C2B—H2BA | 122.4 | O3—C12—H12D | 109.0 |
F2B—C3B—C4B | 120.2 (5) | C13A—C12—H12D | 67.0 |
F2B—C3B—C2B | 115.7 (6) | H12A—C12—H12D | 46.1 |
C4B—C3B—C2B | 124.1 (5) | H12B—C12—H12D | 139.4 |
C3B—C4B—C5B | 122.4 (6) | H12C—C12—H12D | 107.8 |
C3B—C4B—H4BA | 118.8 | C12—C13A—H13A | 109.5 |
C5B—C4B—H4BA | 118.8 | H12D—C13A—H13A | 100.8 |
C4B—C5B—C6B | 113.6 (8) | C12—C13A—H13B | 109.5 |
C4B—C5B—H5BA | 123.2 | H12D—C13A—H13B | 143.5 |
C6B—C5B—H5BA | 123.2 | C12—C13A—H13C | 109.5 |
C1B—C6B—C5B | 120.6 (9) | H12D—C13A—H13C | 77.8 |
C1B—C6B—C7 | 119.2 (7) | C12—C13B—H13D | 109.5 |
C5B—C6B—C7 | 120.1 (8) | C12—C13B—H13E | 109.5 |
N1—C7—C6A | 113.1 (6) | H13D—C13B—H13E | 109.5 |
N1—C7—C10 | 109.82 (15) | C12—C13B—H13F | 109.5 |
C6A—C7—C10 | 115.3 (7) | H13D—C13B—H13F | 109.5 |
N1—C7—C6B | 105.6 (8) | H13E—C13B—H13F | 109.5 |
C10—C7—C6B | 110.0 (8) | C9—C14—H14A | 109.5 |
N1—C7—H7A | 105.9 | C9—C14—H14B | 109.5 |
C6A—C7—H7A | 105.9 | H14A—C14—H14B | 109.5 |
C10—C7—H7A | 105.9 | C9—C14—H14C | 109.5 |
C6B—C7—H7A | 119.3 | H14A—C14—H14C | 109.5 |
N1—C7—H7B | 104.8 | H14B—C14—H14C | 109.5 |
C6A—C7—H7B | 108.1 | ||
F1A—C1A—C2A—C3A | −178.4 (6) | C5A—C6A—C7—C6B | −168 (8) |
C6A—C1A—C2A—C3A | 0.7 (12) | C1A—C6A—C7—C6B | 10 (5) |
C1A—C2A—C3A—F2A | 179.2 (6) | C1B—C6B—C7—N1 | −120.8 (15) |
C1A—C2A—C3A—C4A | 0.3 (12) | C5B—C6B—C7—N1 | 60.9 (18) |
C2A—C3A—C4A—C5A | −1.0 (11) | C1B—C6B—C7—C6A | 5 (5) |
F2A—C3A—C4A—C5A | −180.0 (5) | C5B—C6B—C7—C6A | −173 (8) |
C3A—C4A—C5A—C6A | 0.8 (12) | C1B—C6B—C7—C10 | 120.7 (15) |
C4A—C5A—C6A—C1A | 0.1 (18) | C5B—C6B—C7—C10 | −57.6 (18) |
C4A—C5A—C6A—C7 | 177.7 (8) | C7—N1—C8—O1 | −178.9 (2) |
C2A—C1A—C6A—C5A | −0.9 (17) | C7—N1—C8—N2 | 1.3 (3) |
F1A—C1A—C6A—C5A | 178.2 (9) | C9—N2—C8—O1 | 166.8 (2) |
C2A—C1A—C6A—C7 | −178.4 (9) | C9—N2—C8—N1 | −13.3 (3) |
F1A—C1A—C6A—C7 | 0.6 (17) | C8—N2—C9—C10 | 9.5 (3) |
F1B—C1B—C2B—C3B | 175.8 (6) | C8—N2—C9—C14 | −169.96 (19) |
C6B—C1B—C2B—C3B | −0.7 (16) | N2—C9—C10—C11 | −173.48 (17) |
C1B—C2B—C3B—F2B | −179.1 (5) | C14—C9—C10—C11 | 6.0 (3) |
C1B—C2B—C3B—C4B | 0.7 (12) | N2—C9—C10—C7 | 6.1 (3) |
F2B—C3B—C4B—C5B | −178.7 (6) | C14—C9—C10—C7 | −174.45 (18) |
C2B—C3B—C4B—C5B | 1.5 (12) | N1—C7—C10—C9 | −15.5 (2) |
C3B—C4B—C5B—C6B | −3.4 (14) | C6A—C7—C10—C9 | 113.7 (5) |
C2B—C1B—C6B—C5B | −1 (3) | C6B—C7—C10—C9 | 100.3 (6) |
F1B—C1B—C6B—C5B | −178.0 (13) | N1—C7—C10—C11 | 164.14 (16) |
C2B—C1B—C6B—C7 | −179.8 (10) | C6A—C7—C10—C11 | −66.7 (5) |
F1B—C1B—C6B—C7 | 4 (2) | C6B—C7—C10—C11 | −80.1 (6) |
C4B—C5B—C6B—C1B | 3 (2) | C12—O3—C11—O2 | −4.1 (3) |
C4B—C5B—C6B—C7 | −178.4 (12) | C12—O3—C11—C10 | 176.8 (2) |
C8—N1—C7—C6A | −118.4 (5) | C9—C10—C11—O2 | 6.0 (3) |
C8—N1—C7—C10 | 12.0 (3) | C7—C10—C11—O2 | −173.63 (19) |
C8—N1—C7—C6B | −106.5 (7) | C9—C10—C11—O3 | −174.99 (18) |
C5A—C6A—C7—N1 | −109.7 (12) | C7—C10—C11—O3 | 5.4 (2) |
C1A—C6A—C7—N1 | 67.8 (15) | C11—O3—C12—C13B | −104.0 (4) |
C5A—C6A—C7—C10 | 122.8 (12) | C11—O3—C12—C13A | −154.2 (3) |
C1A—C6A—C7—C10 | −59.7 (14) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N1···O2i | 0.89 (3) | 2.14 (3) | 3.007 (2) | 165 (2) |
N2—H1N2···O1ii | 0.86 (3) | 1.99 (3) | 2.840 (2) | 177 (3) |
Symmetry codes: (i) x−1, y, z; (ii) −x+1, −y, −z. |
Experimental details
Crystal data | |
Chemical formula | C14H14F2N2O3 |
Mr | 296.27 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 7.5176 (1), 8.0483 (1), 11.9323 (2) |
α, β, γ (°) | 90.147 (1), 100.839 (1), 108.421 (1) |
V (Å3) | 671.25 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.12 |
Crystal size (mm) | 0.43 × 0.32 × 0.13 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.949, 0.985 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 17515, 3075, 2703 |
Rint | 0.028 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.068, 0.173, 1.08 |
No. of reflections | 3075 |
No. of parameters | 266 |
No. of restraints | 45 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.66, −0.84 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N1···O2i | 0.89 (3) | 2.14 (3) | 3.007 (2) | 165 (2) |
N2—H1N2···O1ii | 0.86 (3) | 1.99 (3) | 2.840 (2) | 177 (3) |
Symmetry codes: (i) x−1, y, z; (ii) −x+1, −y, −z. |
Acknowledgements
HKF thanks Universiti Sains Malaysia for the Research University Golden Goose Grant (No. 1001/PFIZIK/811012). CSY thanks the Malaysian Government and Universiti Sains Malaysia for the award of a post of research officer under the Science Fund (grant No. 305/PFIZIK/613312).
References
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Michael addition followed by aldol condensation known as the Robinson's annulation is synthetically a very useful reaction for the construction of six-membered cyclic compounds (Kalluraya and Rai, 2003). 3,4-Dihydro-pyrimidinones are compounds that have drawn wide-spread attention, due to their pharmaceutical applications (Atwal, 1990; Sadanandam et al., 1992). The common synthetic routes to these compounds generally involve multi-step transformation, which are essentially based on the Biginelli condensation methodology (Steele et al., 1998). These pyrimidinones are also associated with activities like calcium channel blocking (Manjula et al., 2004). We synthesized the title compound by means of Robinson's annulation employing the microwave technique, and its crystal structure is reported here.
Bond lengths (Allen et al., 1987) and angles in the title molecule (Fig. 1) are within normal ranges. The dihydropyrimidinone ring adopts a flattened boat conformation, with puckering parameters Q = 0.170 (2) Å, Θ = 97.4 (7)° and ϕ = 254.4 (7)°.
The difluorophenyl group is disordered over two positions with occupancies of 0.544 (3) and 0.456 (3). The caboxylate methyl group is also disordered over two positions with occupancies of 0.580 (8) and 0.420 (8).
In the crystal structure, the molecules are linked into centrosymmetric dimers by means of paired N—H···O hydrogen bonds (Table 1). The dimers are linked into a chain along the [100] again by N—H···O hydrogen bonds (Fig. 2).