Experimental
Crystal data
C23H24NO4+·Br− Mr = 458.34 Monoclinic, P 21 /n a = 9.716 (4) Å b = 7.623 (3) Å c = 27.443 (11) Å β = 92.983 (8)° V = 2029.9 (14) Å3 Z = 4 Mo Kα radiation μ = 2.06 mm−1 T = 295 K 0.12 × 0.10 × 0.06 mm
|
Data collection
Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker 2005 ) Tmin = 0.791, Tmax = 0.887 10394 measured reflections 3592 independent reflections 1965 reflections with I > 2σ(I) Rint = 0.069
|
Cg1⋯Cg3i | 3.780 (4) | Cg2⋯Cg3ii | 3.775 (4) | Symmetry codes: (i) -x+1, -y, -z+1; (ii) -x+1, -y+1, -z+1. Cg1, Cg2 and Cg3 are the centroids of the N1/C13/C12/C9/C10/C14, C5–C10 and C15/C19–C22/C16 rings, respectively. | |
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A | C12—H12⋯Br1 | 0.93 | 2.77 | 3.658 (5) | 161 | C2—H2A⋯O2iii | 0.97 | 2.64 | 3.404 (14) | 136 | Symmetry code: (iii) . | |
Data collection: SMART (Bruker, 2005
); cell refinement: SAINT (Bruker, 2005
); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008
); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008
); molecular graphics: XP in SHELXTL (Sheldrick, 2008
); software used to prepare material for publication: SHELXL97.
Supporting information
Berberrubine was obtained from berberine by pyrolysis at 180 °C for 1 h. Then dried berberrubine (10 mmol) was dissolved in DMF (200 ml) and incubated with n-butyl bromide (11 mmol) for 5 h at 100 °C to give the corresponding crude 9-O-butyl-berberrubine bromide. The product was purified by recrystallization from methanol at -18 °C. Crystals suitable for X-ray diffraction were obtained by slow evaporation of a solution of the solid dissolved in methanol at room temperature for 15 d.
All H atoms were placed in calculated positions,with C—H = 0.93–0.97 Å, and included in the final cycles of refinement using a riding model, with Uiso(H) = 1.2Ueq(C) for aryl and methylene H atoms or 1.5Ueq(C) for methyl H atoms.
Data collection: SMART (Bruker, 2005); cell refinement: SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).
9-
O-Butylberberrubinium bromide
top Crystal data top C23H24NO4+·Br− | F(000) = 944 |
Mr = 458.34 | Dx = 1.500 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 1163 reflections |
a = 9.716 (4) Å | θ = 2.8–19.6° |
b = 7.623 (3) Å | µ = 2.06 mm−1 |
c = 27.443 (11) Å | T = 295 K |
β = 92.983 (8)° | Block, yellow |
V = 2029.9 (14) Å3 | 0.12 × 0.10 × 0.06 mm |
Z = 4 | |
Data collection top Bruker SMART CCD area-detector diffractometer | 3592 independent reflections |
Radiation source: fine-focus sealed tube | 1965 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.069 |
ϕ and ω scans | θmax = 25.1°, θmin = 1.5° |
Absorption correction: multi-scan (SADABS; Bruker 2005) | h = −11→11 |
Tmin = 0.791, Tmax = 0.887 | k = −7→9 |
10394 measured reflections | l = −32→32 |
Refinement top Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.060 | H-atom parameters constrained |
wR(F2) = 0.161 | w = 1/[σ2(Fo2) + (0.0623P)2 + 1.1441P] where P = (Fo2 + 2Fc2)/3 |
S = 1.08 | (Δ/σ)max < 0.001 |
3592 reflections | Δρmax = 0.58 e Å−3 |
276 parameters | Δρmin = −0.55 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0020 (7) |
Crystal data top C23H24NO4+·Br− | V = 2029.9 (14) Å3 |
Mr = 458.34 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.716 (4) Å | µ = 2.06 mm−1 |
b = 7.623 (3) Å | T = 295 K |
c = 27.443 (11) Å | 0.12 × 0.10 × 0.06 mm |
β = 92.983 (8)° | |
Data collection top Bruker SMART CCD area-detector diffractometer | 3592 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker 2005) | 1965 reflections with I > 2σ(I) |
Tmin = 0.791, Tmax = 0.887 | Rint = 0.069 |
10394 measured reflections | |
Refinement top R[F2 > 2σ(F2)] = 0.060 | 0 restraints |
wR(F2) = 0.161 | H-atom parameters constrained |
S = 1.08 | Δρmax = 0.58 e Å−3 |
3592 reflections | Δρmin = −0.55 e Å−3 |
276 parameters | |
Special details top Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
Br1 | 0.19113 (6) | 0.34507 (10) | 0.58534 (2) | 0.0683 (3) | |
O1 | 0.4605 (4) | 0.4269 (6) | 0.31978 (15) | 0.0691 (13) | |
O2 | 0.8340 (4) | −0.0249 (7) | 0.66220 (16) | 0.0802 (14) | |
O3 | 0.5968 (4) | 0.0055 (6) | 0.66073 (16) | 0.0708 (12) | |
O4 | 0.1935 (4) | 0.5291 (6) | 0.31514 (15) | 0.0741 (13) | |
N1 | 0.6413 (4) | 0.2391 (6) | 0.44906 (17) | 0.0469 (12) | |
C1' | 0.5253 (10) | 0.5997 (11) | 0.3125 (3) | 0.073 (2) | 0.735 (7) |
H1'1 | 0.5814 | 0.6382 | 0.3407 | 0.088* | 0.735 (7) |
H1'2 | 0.4589 | 0.6897 | 0.3027 | 0.088* | 0.735 (7) |
C1 | 0.4509 (12) | 0.5865 (18) | 0.2933 (5) | 0.073 (2) | 0.265 (7) |
H1A | 0.4497 | 0.6807 | 0.3170 | 0.088* | 0.265 (7) |
H1B | 0.3617 | 0.5872 | 0.2757 | 0.088* | 0.265 (7) |
C2 | 0.5550 (11) | 0.6342 (14) | 0.2577 (4) | 0.107 (3) | 0.735 (7) |
H2A | 0.5042 | 0.6720 | 0.2282 | 0.128* | 0.735 (7) |
H2B | 0.6033 | 0.7367 | 0.2708 | 0.128* | 0.735 (7) |
C3 | 0.6599 (11) | 0.5126 (15) | 0.2427 (4) | 0.117 (3) | 0.735 (7) |
H3A | 0.6196 | 0.3962 | 0.2410 | 0.140* | 0.735 (7) |
H3B | 0.7335 | 0.5103 | 0.2679 | 0.140* | 0.735 (7) |
C4 | 0.7234 (15) | 0.5492 (18) | 0.1943 (4) | 0.120 (4) | 0.735 (7) |
H4A | 0.7620 | 0.4430 | 0.1822 | 0.180* | 0.735 (7) |
H4B | 0.7948 | 0.6357 | 0.1990 | 0.180* | 0.735 (7) |
H4C | 0.6537 | 0.5922 | 0.1713 | 0.180* | 0.735 (7) |
C2' | 0.611 (3) | 0.540 (3) | 0.2709 (9) | 0.107 (3) | 0.265 (7) |
H2'1 | 0.6905 | 0.4764 | 0.2843 | 0.128* | 0.265 (7) |
H2'2 | 0.5562 | 0.4586 | 0.2506 | 0.128* | 0.265 (7) |
C3' | 0.659 (3) | 0.687 (3) | 0.2392 (8) | 0.117 (3) | 0.265 (7) |
H3'1 | 0.7435 | 0.7352 | 0.2543 | 0.140* | 0.265 (7) |
H3'2 | 0.5904 | 0.7792 | 0.2382 | 0.140* | 0.265 (7) |
C4' | 0.686 (5) | 0.633 (5) | 0.1874 (8) | 0.120 (4) | 0.265 (7) |
H4'1 | 0.7240 | 0.7304 | 0.1705 | 0.180* | 0.265 (7) |
H4'2 | 0.6009 | 0.5976 | 0.1709 | 0.180* | 0.265 (7) |
H4'3 | 0.7498 | 0.5369 | 0.1880 | 0.180* | 0.265 (7) |
C5 | 0.3838 (6) | 0.4217 (8) | 0.3608 (2) | 0.0544 (14) | |
C6 | 0.2479 (6) | 0.4712 (8) | 0.3590 (2) | 0.0570 (15) | |
C7 | 0.1715 (6) | 0.4554 (8) | 0.4011 (2) | 0.0592 (16) | |
H7 | 0.0792 | 0.4880 | 0.3995 | 0.071* | |
C8 | 0.2291 (6) | 0.3941 (8) | 0.4439 (2) | 0.0533 (15) | |
H8 | 0.1758 | 0.3835 | 0.4710 | 0.064* | |
C9 | 0.3696 (5) | 0.3464 (8) | 0.4475 (2) | 0.0482 (13) | |
C10 | 0.4459 (5) | 0.3590 (8) | 0.4044 (2) | 0.0479 (13) | |
C11 | 0.0506 (6) | 0.5753 (10) | 0.3118 (2) | 0.080 (2) | |
H11A | −0.0039 | 0.4744 | 0.3190 | 0.121* | |
H11B | 0.0260 | 0.6157 | 0.2794 | 0.121* | |
H11C | 0.0339 | 0.6668 | 0.3348 | 0.121* | |
C12 | 0.4368 (5) | 0.2854 (7) | 0.4901 (2) | 0.0482 (14) | |
H12 | 0.3883 | 0.2809 | 0.5184 | 0.058* | |
C13 | 0.5723 (5) | 0.2312 (7) | 0.4923 (2) | 0.0460 (13) | |
C14 | 0.5833 (5) | 0.3019 (7) | 0.4082 (2) | 0.0488 (14) | |
H14 | 0.6356 | 0.3086 | 0.3808 | 0.059* | |
C15 | 0.6459 (5) | 0.1642 (7) | 0.5359 (2) | 0.0476 (13) | |
C16 | 0.7894 (5) | 0.1470 (8) | 0.5374 (2) | 0.0507 (14) | |
C17 | 0.8631 (6) | 0.2081 (8) | 0.4940 (2) | 0.0573 (16) | |
H17A | 0.8781 | 0.3337 | 0.4964 | 0.069* | |
H17B | 0.9524 | 0.1514 | 0.4938 | 0.069* | |
C18 | 0.7835 (5) | 0.1681 (8) | 0.4478 (2) | 0.0567 (15) | |
H18A | 0.7797 | 0.0421 | 0.4429 | 0.068* | |
H18B | 0.8292 | 0.2195 | 0.4206 | 0.068* | |
C19 | 0.5729 (6) | 0.1186 (7) | 0.5774 (2) | 0.0508 (14) | |
H19 | 0.4775 | 0.1284 | 0.5772 | 0.061* | |
C20 | 0.6445 (6) | 0.0617 (8) | 0.6165 (2) | 0.0532 (15) | |
C21 | 0.7863 (6) | 0.0423 (8) | 0.6182 (2) | 0.0597 (15) | |
C22 | 0.8615 (6) | 0.0853 (8) | 0.5790 (2) | 0.0580 (15) | |
H22 | 0.9569 | 0.0738 | 0.5803 | 0.070* | |
C23 | 0.7160 (7) | −0.0309 (10) | 0.6915 (2) | 0.0759 (19) | |
H23A | 0.7082 | −0.1461 | 0.7061 | 0.091* | |
H23B | 0.7252 | 0.0554 | 0.7174 | 0.091* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Br1 | 0.0502 (4) | 0.0849 (6) | 0.0714 (5) | −0.0009 (4) | 0.0186 (3) | 0.0016 (4) |
O1 | 0.066 (3) | 0.088 (3) | 0.055 (3) | 0.020 (2) | 0.017 (2) | −0.005 (2) |
O2 | 0.069 (3) | 0.111 (4) | 0.060 (3) | 0.010 (3) | −0.007 (3) | 0.011 (3) |
O3 | 0.067 (3) | 0.088 (3) | 0.058 (3) | 0.000 (3) | 0.006 (2) | 0.010 (2) |
O4 | 0.051 (3) | 0.116 (4) | 0.056 (3) | 0.018 (3) | 0.003 (2) | −0.001 (3) |
N1 | 0.039 (2) | 0.056 (3) | 0.047 (3) | 0.002 (2) | 0.010 (2) | 0.000 (2) |
C1' | 0.077 (4) | 0.080 (4) | 0.064 (4) | 0.002 (4) | 0.020 (4) | 0.015 (4) |
C1 | 0.077 (4) | 0.080 (4) | 0.064 (4) | 0.002 (4) | 0.020 (4) | 0.015 (4) |
C2 | 0.117 (6) | 0.108 (6) | 0.098 (5) | 0.002 (5) | 0.034 (5) | 0.020 (5) |
C3 | 0.133 (6) | 0.114 (6) | 0.107 (6) | 0.002 (6) | 0.039 (5) | 0.015 (5) |
C4 | 0.140 (9) | 0.132 (10) | 0.092 (7) | −0.003 (8) | 0.061 (6) | 0.002 (7) |
C2' | 0.117 (6) | 0.108 (6) | 0.098 (5) | 0.002 (5) | 0.034 (5) | 0.020 (5) |
C3' | 0.133 (6) | 0.114 (6) | 0.107 (6) | 0.002 (6) | 0.039 (5) | 0.015 (5) |
C4' | 0.140 (9) | 0.132 (10) | 0.092 (7) | −0.003 (8) | 0.061 (6) | 0.002 (7) |
C5 | 0.052 (3) | 0.059 (3) | 0.054 (3) | 0.005 (3) | 0.016 (3) | −0.002 (3) |
C6 | 0.051 (3) | 0.071 (4) | 0.049 (3) | 0.004 (3) | 0.004 (3) | −0.002 (3) |
C7 | 0.044 (3) | 0.074 (4) | 0.060 (4) | 0.007 (3) | 0.005 (3) | −0.005 (3) |
C8 | 0.041 (3) | 0.066 (4) | 0.054 (3) | 0.003 (3) | 0.010 (3) | −0.003 (3) |
C9 | 0.044 (3) | 0.052 (3) | 0.049 (3) | −0.001 (3) | 0.011 (3) | −0.008 (3) |
C10 | 0.043 (3) | 0.051 (3) | 0.050 (3) | 0.005 (3) | 0.008 (3) | −0.002 (3) |
C11 | 0.061 (4) | 0.114 (6) | 0.065 (5) | 0.016 (4) | −0.003 (4) | 0.005 (4) |
C12 | 0.044 (3) | 0.055 (3) | 0.047 (3) | 0.001 (3) | 0.012 (3) | 0.000 (3) |
C13 | 0.040 (3) | 0.049 (3) | 0.049 (3) | −0.004 (2) | 0.010 (3) | −0.005 (3) |
C14 | 0.043 (3) | 0.058 (3) | 0.047 (3) | −0.001 (3) | 0.014 (3) | −0.004 (3) |
C15 | 0.043 (3) | 0.046 (3) | 0.055 (3) | −0.003 (3) | 0.006 (3) | 0.001 (3) |
C16 | 0.044 (3) | 0.053 (3) | 0.056 (3) | 0.001 (3) | 0.007 (3) | −0.004 (3) |
C17 | 0.041 (3) | 0.064 (4) | 0.068 (4) | 0.007 (3) | 0.011 (3) | −0.001 (3) |
C18 | 0.043 (3) | 0.066 (4) | 0.062 (4) | 0.011 (3) | 0.014 (3) | −0.001 (3) |
C19 | 0.041 (3) | 0.055 (3) | 0.057 (3) | −0.005 (3) | 0.007 (3) | −0.006 (3) |
C20 | 0.048 (3) | 0.058 (4) | 0.053 (4) | −0.003 (3) | 0.004 (3) | −0.010 (3) |
C21 | 0.053 (3) | 0.066 (4) | 0.059 (4) | 0.001 (3) | −0.006 (3) | 0.001 (3) |
C22 | 0.044 (3) | 0.068 (4) | 0.063 (4) | 0.003 (3) | 0.003 (3) | −0.004 (3) |
C23 | 0.074 (4) | 0.094 (5) | 0.060 (4) | 0.005 (4) | 0.005 (4) | −0.001 (4) |
Geometric parameters (Å, º) top O1—C5 | 1.382 (6) | C4'—H4'3 | 0.9600 |
O1—C1 | 1.418 (12) | C5—C6 | 1.372 (8) |
O1—C1' | 1.477 (8) | C5—C10 | 1.397 (8) |
O2—C21 | 1.370 (7) | C6—C7 | 1.412 (8) |
O2—C23 | 1.434 (7) | C7—C8 | 1.358 (8) |
O3—C20 | 1.389 (7) | C7—H7 | 0.9300 |
O3—C23 | 1.424 (7) | C8—C9 | 1.412 (7) |
O4—C6 | 1.361 (7) | C8—H8 | 0.9300 |
O4—C11 | 1.430 (7) | C9—C12 | 1.389 (7) |
N1—C14 | 1.319 (7) | C9—C10 | 1.431 (7) |
N1—C13 | 1.393 (6) | C10—C14 | 1.403 (7) |
N1—C18 | 1.486 (6) | C11—H11A | 0.9600 |
C1'—C2' | 1.517 (8) | C11—H11B | 0.9600 |
C1'—H1'1 | 0.9700 | C11—H11C | 0.9600 |
C1'—H1'2 | 0.9700 | C12—C13 | 1.378 (7) |
C1—C2 | 1.487 (7) | C12—H12 | 0.9300 |
C1—H1A | 0.9700 | C13—C15 | 1.456 (8) |
C1—H1B | 0.9700 | C14—H14 | 0.9300 |
C2—C3 | 1.454 (7) | C15—C16 | 1.399 (7) |
C2—H2A | 0.9700 | C15—C19 | 1.416 (7) |
C2—H2B | 0.9700 | C16—C22 | 1.391 (8) |
C3—C4 | 1.517 (7) | C16—C17 | 1.497 (7) |
C3—H3A | 0.9700 | C17—C18 | 1.483 (8) |
C3—H3B | 0.9700 | C17—H17A | 0.9700 |
C4—H4A | 0.9600 | C17—H17B | 0.9700 |
C4—H4B | 0.9600 | C18—H18A | 0.9700 |
C4—H4C | 0.9600 | C18—H18B | 0.9700 |
C2'—C3' | 1.510 (8) | C19—C20 | 1.321 (8) |
C2'—H2'1 | 0.9700 | C19—H19 | 0.9300 |
C2'—H2'2 | 0.9700 | C20—C21 | 1.384 (8) |
C3'—C4' | 1.516 (8) | C21—C22 | 1.370 (8) |
C3'—H3'1 | 0.9700 | C22—H22 | 0.9300 |
C3'—H3'2 | 0.9700 | C23—H23A | 0.9700 |
C4'—H4'1 | 0.9600 | C23—H23B | 0.9700 |
C4'—H4'2 | 0.9600 | | |
| | | |
Cg1···Cg3i | 3.780 (4) | Cg2···Cg3ii | 3.775 (4) |
| | | |
C5—O1—C1 | 114.8 (6) | C8—C7—H7 | 119.0 |
C5—O1—C1' | 112.8 (5) | C6—C7—H7 | 119.0 |
C21—O2—C23 | 105.2 (5) | C7—C8—C9 | 120.1 (5) |
C20—O3—C23 | 106.2 (5) | C7—C8—H8 | 119.9 |
C6—O4—C11 | 117.9 (5) | C9—C8—H8 | 119.9 |
C14—N1—C13 | 122.5 (5) | C12—C9—C8 | 123.7 (5) |
C14—N1—C18 | 117.9 (4) | C12—C9—C10 | 118.5 (5) |
C13—N1—C18 | 119.6 (5) | C8—C9—C10 | 117.8 (5) |
O1—C1'—C2' | 95.0 (10) | C5—C10—C14 | 122.4 (5) |
O1—C1'—H1'1 | 112.7 | C5—C10—C9 | 120.8 (5) |
C2'—C1'—H1'1 | 112.7 | C14—C10—C9 | 116.7 (5) |
O1—C1'—H1'2 | 112.7 | O4—C11—H11A | 109.5 |
C2'—C1'—H1'2 | 112.7 | O4—C11—H11B | 109.5 |
H1'1—C1'—H1'2 | 110.2 | H11A—C11—H11B | 109.5 |
O1—C1—C2 | 121.2 (9) | O4—C11—H11C | 109.5 |
O1—C1—H1A | 107.0 | H11A—C11—H11C | 109.5 |
C2—C1—H1A | 107.0 | H11B—C11—H11C | 109.5 |
O1—C1—H1B | 107.0 | C13—C12—C9 | 122.8 (5) |
C2—C1—H1B | 107.0 | C13—C12—H12 | 118.6 |
H1A—C1—H1B | 106.8 | C9—C12—H12 | 118.6 |
C3—C2—C1 | 122.8 (8) | C12—C13—N1 | 116.9 (5) |
C3—C2—H2A | 106.6 | C12—C13—C15 | 124.6 (5) |
C1—C2—H2A | 106.6 | N1—C13—C15 | 118.6 (5) |
C3—C2—H2B | 106.6 | N1—C14—C10 | 122.5 (5) |
C1—C2—H2B | 106.6 | N1—C14—H14 | 118.7 |
H2A—C2—H2B | 106.6 | C10—C14—H14 | 118.7 |
C2—C3—C4 | 117.0 (8) | C16—C15—C19 | 119.6 (5) |
C2—C3—H3A | 108.0 | C16—C15—C13 | 120.2 (5) |
C4—C3—H3A | 108.0 | C19—C15—C13 | 120.2 (5) |
C2—C3—H3B | 108.0 | C22—C16—C15 | 121.0 (5) |
C4—C3—H3B | 108.0 | C22—C16—C17 | 121.2 (5) |
H3A—C3—H3B | 107.3 | C15—C16—C17 | 117.7 (5) |
C3—C4—H4A | 109.5 | C18—C17—C16 | 111.6 (5) |
C3—C4—H4B | 109.5 | C18—C17—H17A | 109.3 |
H4A—C4—H4B | 109.5 | C16—C17—H17A | 109.3 |
C3—C4—H4C | 109.5 | C18—C17—H17B | 109.3 |
H4A—C4—H4C | 109.5 | C16—C17—H17B | 109.3 |
H4B—C4—H4C | 109.5 | H17A—C17—H17B | 108.0 |
C3'—C2'—C1' | 114.1 (9) | C17—C18—N1 | 110.4 (5) |
C3'—C2'—H2'1 | 108.7 | C17—C18—H18A | 109.6 |
C1'—C2'—H2'1 | 108.7 | N1—C18—H18A | 109.6 |
C3'—C2'—H2'2 | 108.7 | C17—C18—H18B | 109.6 |
C1'—C2'—H2'2 | 108.7 | N1—C18—H18B | 109.6 |
H2'1—C2'—H2'2 | 107.6 | H18A—C18—H18B | 108.1 |
C2'—C3'—C4' | 114.3 (10) | C20—C19—C15 | 118.0 (5) |
C2'—C3'—H3'1 | 108.7 | C20—C19—H19 | 121.0 |
C4'—C3'—H3'1 | 108.7 | C15—C19—H19 | 121.0 |
C2'—C3'—H3'2 | 108.7 | C19—C20—C21 | 123.0 (6) |
C4'—C3'—H3'2 | 108.7 | C19—C20—O3 | 128.7 (5) |
H3'1—C3'—H3'2 | 107.6 | C21—C20—O3 | 108.3 (6) |
C3'—C4'—H4'1 | 109.5 | O2—C21—C22 | 127.7 (6) |
C3'—C4'—H4'2 | 109.5 | O2—C21—C20 | 111.1 (6) |
H4'1—C4'—H4'2 | 109.5 | C22—C21—C20 | 121.2 (6) |
C3'—C4'—H4'3 | 109.5 | C21—C22—C16 | 117.3 (5) |
H4'1—C4'—H4'3 | 109.5 | C21—C22—H22 | 121.3 |
H4'2—C4'—H4'3 | 109.5 | C16—C22—H22 | 121.3 |
C6—C5—O1 | 121.4 (6) | O3—C23—O2 | 108.1 (5) |
C6—C5—C10 | 119.8 (5) | O3—C23—H23A | 110.1 |
O1—C5—C10 | 118.8 (5) | O2—C23—H23A | 110.1 |
O4—C6—C5 | 116.8 (5) | O3—C23—H23B | 110.1 |
O4—C6—C7 | 123.7 (5) | O2—C23—H23B | 110.1 |
C5—C6—C7 | 119.5 (6) | H23A—C23—H23B | 108.4 |
C8—C7—C6 | 121.9 (5) | | |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x+1, −y+1, −z+1. |
Hydrogen-bond geometry (Å, º) top D—H···A | D—H | H···A | D···A | D—H···A |
C12—H12···Br1 | 0.93 | 2.77 | 3.658 (5) | 161 |
C2—H2A···O2iii | 0.97 | 2.64 | 3.404 (14) | 136 |
Symmetry code: (iii) x−1/2, −y+1/2, z−1/2. |
Experimental details
Crystal data |
Chemical formula | C23H24NO4+·Br− |
Mr | 458.34 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 295 |
a, b, c (Å) | 9.716 (4), 7.623 (3), 27.443 (11) |
β (°) | 92.983 (8) |
V (Å3) | 2029.9 (14) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 2.06 |
Crystal size (mm) | 0.12 × 0.10 × 0.06 |
|
Data collection |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker 2005) |
Tmin, Tmax | 0.791, 0.887 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10394, 3592, 1965 |
Rint | 0.069 |
(sin θ/λ)max (Å−1) | 0.596 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.060, 0.161, 1.08 |
No. of reflections | 3592 |
No. of parameters | 276 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.58, −0.55 |
Selected interatomic distances (Å) topCg1···Cg3i | 3.780 (4) | Cg2···Cg3ii | 3.775 (4) |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x+1, −y+1, −z+1. |
Hydrogen-bond geometry (Å, º) top D—H···A | D—H | H···A | D···A | D—H···A |
C12—H12···Br1 | 0.93 | 2.77 | 3.658 (5) | 161.3 |
C2—H2A···O2iii | 0.97 | 2.64 | 3.404 (14) | 136.1 |
Symmetry code: (iii) x−1/2, −y+1/2, z−1/2. |
Acknowledgements
This work was supported by the National Natural Science Foundation of China (grant No. 20673084), the Natural Science Foundation Project of CQ CSTC (grant No. 2008BB5257) and the Major Technologies R & D Program of CQ CSTC (grant No. 2008AA5021).
References
Bruker (2005). SMART, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Jiang, J. Y., Geng, D. S., Tursonjan, T. & Liu, F. (1998). Chin. Pharmacol. Bull. 14, 434–437. CAS Google Scholar
Kupeli, E., Kosar, M., Yesilada, E., Husnu, K. & Baser, C. (2002). Life Sci. 72, 645–657. Web of Science CrossRef PubMed CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Ye, X. L. & Li, X. G. (2007). Chinese Patent No. 200710078505.X. Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
 | CRYSTALLOGRAPHIC COMMUNICATIONS |
ISSN: 2056-9890
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Berberine is a main compound presented in the rhizome of Coptis chinensis Franch. Berberine and its derivatives are used for treating diarrhoea (Kupeli et al., 2002) and anti-inflammatory (Jiang et al., 1998). Herewith we report the crystal structure of the title compound (I), which exhibits an excellent antibacterial activity (Ye & Li, 2007).
In (I) (Fig. 1), the dihedral angles formed by the benzene rings C5–C10 and C15/C19/C20/C21/C22/C16 with the pyridine ring are 2.2 (3) and 12.8 (3)°, respectively. The six-membered heterocyclic ring (C13/C15/C16/C17/C18/N1) adopts screw-boat conformation. In the crystal structure, weak intermolecular C—H···O and C—H···Br hydrogen bonds (Table 2) link the molecules. The aromatic rings in the cations are involved in π–π interactions (Table 1). The cations are packed via π–π interactions into stacks propagated in direction [010].