organic compounds
5-Dimethylamino-N,N-dimethyl-2-nitrobenzamide
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bManipal Institute of Technology, Manipal University, Manipal 576 104, India, and cDepartment of Chemistry, National Institute of Technology-Karnataka, Surathkal, Mangalore 575 025, India
*Correspondence e-mail: hkfun@usm.my
In the title compound, C11H15N3O3, one of the methyl groups attached to the benzamide unit is slightly twisted with a C—N—C—C torsion angle of 4.04 (13)°. The crystal packing is stabilized by weak intermolecular C—H⋯O hydrogen bonds together with a weak C—H⋯π interaction.
Related literature
For nitroaniline mustards, see: Brian et al. (1992); Rauth, (1984). For N-[(N,N-dimethylamino)ethyl]carboxamide derivatives, see: Alston et al. (1983); Denny & Wilson (1986); Palmer et al. (1990). For bond-length data, see: Allen et al. (1987). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536809018017/dn2453sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809018017/dn2453Isup2.hkl
5-Fluoro-2-nitrobenzoic acid (5 g, 0.0270 mol) was heated with 40% aqueous dimethyl amine solution (50 ml) at 100°C for 18 hrs. Reaction mixture was concentrated through rotovap using high vacuum pump to afford 5-(dimethylamino)-2-nitrobenzoic acid as yellow crystalline solid (4.5 g). To a solution of 5-(dimethylamino)-2-nitrobenzoic acid (4 g, 0.019 mol) in DMF(40 ml) was added 1-(3-Dimethylaminopropyl)-3-ethyl carbodiimide hydrochloride (5.4 g, 0.0285 mol), 1-hydroxy benzotriazole (0.25 g, 0.0019 mol) and N,N-diisopropyl ethylamine (4.9 g, 0.038 mol) and the reaction mixture was stirred at room temperature for 18 hrs. Reaction mixture was portioned between 10% sodium bicarbonate solution and ethyl acetate (25 ml). The organic layer was washed with brine and dried over anhydrous sodium sulfate and concentrated through rotovap. The concentrated product were purified by
(60–120 mesh silica gel) using hexane and ethyl acetate as to afford 5-(dimethylamino)-N, N-dimethyl-2-nitrobenzamide (3 g, 66.6%) as yellow crystalline solid. M.p was found to be 458–461 K.H atoms were positioned geometrically [C–H = 0.93–0.96 Å] and refined using a riding model, with Uiso(H) = 1.2Ueq(C) and 1.5Ueq(methyl C). A rotating–group model was used for the methyl groups. Since there is no anamolous scattering effects, 2707 Friedel pairs were merged before final refinement.
The largest residual electron densities are located in the middle of some C-C bonds within the phenyl ring.
Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C11H15N3O3 | F(000) = 252 |
Mr = 237.26 | Dx = 1.351 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 9204 reflections |
a = 7.8581 (2) Å | θ = 2.7–40.5° |
b = 7.2921 (2) Å | µ = 0.10 mm−1 |
c = 10.5183 (3) Å | T = 100 K |
β = 104.663 (1)° | Block, yellow |
V = 583.09 (3) Å3 | 0.52 × 0.45 × 0.33 mm |
Z = 2 |
Bruker SMART APEXII CCD area-detector diffractometer | 3233 independent reflections |
Radiation source: fine-focus sealed tube | 3002 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.027 |
ϕ and ω scans | θmax = 37.5°, θmin = 2.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −13→13 |
Tmin = 0.949, Tmax = 0.965 | k = −12→12 |
16075 measured reflections | l = −18→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.038 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.103 | H-atom parameters constrained |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0716P)2 + 0.0071P] where P = (Fo2 + 2Fc2)/3 |
3233 reflections | (Δ/σ)max < 0.001 |
158 parameters | Δρmax = 0.64 e Å−3 |
1 restraint | Δρmin = −0.19 e Å−3 |
C11H15N3O3 | V = 583.09 (3) Å3 |
Mr = 237.26 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 7.8581 (2) Å | µ = 0.10 mm−1 |
b = 7.2921 (2) Å | T = 100 K |
c = 10.5183 (3) Å | 0.52 × 0.45 × 0.33 mm |
β = 104.663 (1)° |
Bruker SMART APEXII CCD area-detector diffractometer | 3233 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 3002 reflections with I > 2σ(I) |
Tmin = 0.949, Tmax = 0.965 | Rint = 0.027 |
16075 measured reflections |
R[F2 > 2σ(F2)] = 0.038 | 1 restraint |
wR(F2) = 0.103 | H-atom parameters constrained |
S = 1.08 | Δρmax = 0.64 e Å−3 |
3233 reflections | Δρmin = −0.19 e Å−3 |
158 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.42663 (10) | 1.04274 (10) | 0.31204 (7) | 0.01969 (13) | |
O2 | 0.81992 (10) | 0.62755 (17) | 0.20077 (10) | 0.0334 (2) | |
O3 | 0.71314 (10) | 0.76718 (13) | 0.34531 (8) | 0.02322 (15) | |
N1 | 0.32548 (10) | 0.78907 (13) | 0.39646 (8) | 0.01811 (14) | |
N2 | 0.03825 (10) | 0.70383 (12) | −0.13123 (8) | 0.01594 (13) | |
N3 | 0.69532 (10) | 0.69824 (13) | 0.23538 (9) | 0.01899 (15) | |
C1 | 0.21826 (10) | 0.78067 (12) | 0.08485 (8) | 0.01443 (13) | |
H1A | 0.1210 | 0.8309 | 0.1072 | 0.017* | |
C2 | 0.19805 (10) | 0.70835 (12) | −0.04364 (9) | 0.01396 (13) | |
C3 | 0.35014 (11) | 0.63797 (13) | −0.07614 (9) | 0.01687 (15) | |
H3A | 0.3427 | 0.5950 | −0.1606 | 0.020* | |
C4 | 0.50889 (12) | 0.63311 (14) | 0.01717 (10) | 0.01789 (16) | |
H4A | 0.6070 | 0.5837 | −0.0045 | 0.021* | |
C5 | 0.52463 (11) | 0.70133 (13) | 0.14373 (9) | 0.01538 (14) | |
C6 | 0.37880 (10) | 0.77846 (12) | 0.17780 (8) | 0.01392 (13) | |
C7 | 0.38381 (11) | 0.87931 (13) | 0.30423 (8) | 0.01530 (14) | |
C8 | 0.30516 (14) | 0.88622 (18) | 0.51258 (10) | 0.02438 (19) | |
H8A | 0.3409 | 1.0116 | 0.5088 | 0.037* | |
H8B | 0.3770 | 0.8290 | 0.5899 | 0.037* | |
H8C | 0.1842 | 0.8822 | 0.5156 | 0.037* | |
C9 | 0.26858 (13) | 0.59813 (16) | 0.38621 (11) | 0.02241 (18) | |
H9A | 0.3149 | 0.5368 | 0.3215 | 0.034* | |
H9B | 0.1424 | 0.5930 | 0.3606 | 0.034* | |
H9C | 0.3109 | 0.5389 | 0.4698 | 0.034* | |
C10 | −0.11334 (12) | 0.79019 (15) | −0.10016 (10) | 0.02084 (17) | |
H10A | −0.1220 | 0.7503 | −0.0151 | 0.031* | |
H10B | −0.2183 | 0.7562 | −0.1650 | 0.031* | |
H10C | −0.0997 | 0.9210 | −0.0999 | 0.031* | |
C11 | 0.02302 (13) | 0.65472 (17) | −0.26808 (10) | 0.02261 (18) | |
H11A | 0.0664 | 0.5324 | −0.2724 | 0.034* | |
H11B | 0.0908 | 0.7388 | −0.3056 | 0.034* | |
H11C | −0.0982 | 0.6607 | −0.3163 | 0.034* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0221 (3) | 0.0166 (3) | 0.0198 (3) | −0.0026 (2) | 0.0044 (2) | −0.0016 (2) |
O2 | 0.0152 (3) | 0.0482 (6) | 0.0356 (4) | 0.0109 (3) | 0.0039 (3) | −0.0048 (4) |
O3 | 0.0180 (3) | 0.0286 (4) | 0.0212 (3) | −0.0001 (3) | 0.0016 (2) | 0.0009 (3) |
N1 | 0.0175 (3) | 0.0211 (4) | 0.0163 (3) | −0.0025 (3) | 0.0053 (2) | 0.0010 (3) |
N2 | 0.0142 (3) | 0.0169 (3) | 0.0162 (3) | 0.0002 (2) | 0.0029 (2) | −0.0020 (3) |
N3 | 0.0132 (3) | 0.0199 (3) | 0.0232 (3) | 0.0010 (3) | 0.0033 (2) | 0.0028 (3) |
C1 | 0.0119 (3) | 0.0156 (3) | 0.0163 (3) | 0.0001 (2) | 0.0045 (2) | −0.0015 (3) |
C2 | 0.0134 (3) | 0.0125 (3) | 0.0162 (3) | −0.0006 (2) | 0.0042 (2) | −0.0005 (3) |
C3 | 0.0154 (3) | 0.0165 (3) | 0.0198 (4) | 0.0002 (3) | 0.0065 (3) | −0.0033 (3) |
C4 | 0.0142 (3) | 0.0175 (4) | 0.0230 (4) | 0.0013 (3) | 0.0065 (3) | −0.0022 (3) |
C5 | 0.0117 (3) | 0.0151 (3) | 0.0191 (3) | 0.0008 (3) | 0.0036 (2) | 0.0010 (3) |
C6 | 0.0128 (3) | 0.0134 (3) | 0.0159 (3) | −0.0007 (2) | 0.0043 (2) | 0.0011 (3) |
C7 | 0.0131 (3) | 0.0175 (3) | 0.0150 (3) | −0.0004 (3) | 0.0029 (2) | 0.0003 (3) |
C8 | 0.0253 (4) | 0.0322 (5) | 0.0174 (4) | 0.0020 (4) | 0.0086 (3) | 0.0002 (4) |
C9 | 0.0205 (4) | 0.0228 (4) | 0.0232 (4) | −0.0045 (3) | 0.0041 (3) | 0.0059 (3) |
C10 | 0.0145 (3) | 0.0253 (4) | 0.0214 (4) | 0.0033 (3) | 0.0020 (3) | −0.0045 (4) |
C11 | 0.0208 (4) | 0.0303 (5) | 0.0164 (3) | −0.0019 (3) | 0.0040 (3) | −0.0045 (3) |
O1—C7 | 1.2354 (12) | C4—C5 | 1.3969 (13) |
O2—N3 | 1.2400 (12) | C4—H4A | 0.9300 |
O3—N3 | 1.2358 (12) | C5—C6 | 1.4021 (11) |
N1—C7 | 1.3450 (12) | C6—C7 | 1.5115 (13) |
N1—C8 | 1.4553 (13) | C8—H8A | 0.9600 |
N1—C9 | 1.4580 (14) | C8—H8B | 0.9600 |
N2—C2 | 1.3569 (11) | C8—H8C | 0.9600 |
N2—C10 | 1.4558 (12) | C9—H9A | 0.9600 |
N2—C11 | 1.4585 (12) | C9—H9B | 0.9600 |
N3—C5 | 1.4403 (12) | C9—H9C | 0.9600 |
C1—C6 | 1.3868 (11) | C10—H10A | 0.9600 |
C1—C2 | 1.4216 (12) | C10—H10B | 0.9600 |
C1—H1A | 0.9300 | C10—H10C | 0.9600 |
C2—C3 | 1.4197 (11) | C11—H11A | 0.9600 |
C3—C4 | 1.3787 (12) | C11—H11B | 0.9600 |
C3—H3A | 0.9300 | C11—H11C | 0.9600 |
C7—N1—C8 | 119.80 (9) | O1—C7—N1 | 124.11 (9) |
C7—N1—C9 | 124.61 (8) | O1—C7—C6 | 118.29 (8) |
C8—N1—C9 | 115.48 (8) | N1—C7—C6 | 117.31 (8) |
C2—N2—C10 | 120.41 (7) | N1—C8—H8A | 109.5 |
C2—N2—C11 | 120.45 (7) | N1—C8—H8B | 109.5 |
C10—N2—C11 | 117.41 (8) | H8A—C8—H8B | 109.5 |
O3—N3—O2 | 122.21 (9) | N1—C8—H8C | 109.5 |
O3—N3—C5 | 119.06 (8) | H8A—C8—H8C | 109.5 |
O2—N3—C5 | 118.74 (9) | H8B—C8—H8C | 109.5 |
C6—C1—C2 | 121.92 (7) | N1—C9—H9A | 109.5 |
C6—C1—H1A | 119.0 | N1—C9—H9B | 109.5 |
C2—C1—H1A | 119.0 | H9A—C9—H9B | 109.5 |
N2—C2—C3 | 121.23 (8) | N1—C9—H9C | 109.5 |
N2—C2—C1 | 121.07 (7) | H9A—C9—H9C | 109.5 |
C3—C2—C1 | 117.69 (7) | H9B—C9—H9C | 109.5 |
C4—C3—C2 | 120.20 (8) | N2—C10—H10A | 109.5 |
C4—C3—H3A | 119.9 | N2—C10—H10B | 109.5 |
C2—C3—H3A | 119.9 | H10A—C10—H10B | 109.5 |
C3—C4—C5 | 121.00 (8) | N2—C10—H10C | 109.5 |
C3—C4—H4A | 119.5 | H10A—C10—H10C | 109.5 |
C5—C4—H4A | 119.5 | H10B—C10—H10C | 109.5 |
C4—C5—C6 | 120.36 (8) | N2—C11—H11A | 109.5 |
C4—C5—N3 | 118.37 (7) | N2—C11—H11B | 109.5 |
C6—C5—N3 | 121.20 (8) | H11A—C11—H11B | 109.5 |
C1—C6—C5 | 118.75 (8) | N2—C11—H11C | 109.5 |
C1—C6—C7 | 115.54 (7) | H11A—C11—H11C | 109.5 |
C5—C6—C7 | 125.39 (7) | H11B—C11—H11C | 109.5 |
C10—N2—C2—C3 | −174.89 (9) | C2—C1—C6—C5 | −0.44 (13) |
C11—N2—C2—C3 | −10.25 (14) | C2—C1—C6—C7 | 173.36 (8) |
C10—N2—C2—C1 | 6.32 (14) | C4—C5—C6—C1 | 1.86 (13) |
C11—N2—C2—C1 | 170.96 (9) | N3—C5—C6—C1 | 178.85 (8) |
C6—C1—C2—N2 | 176.85 (9) | C4—C5—C6—C7 | −171.28 (9) |
C6—C1—C2—C3 | −1.98 (13) | N3—C5—C6—C7 | 5.71 (14) |
N2—C2—C3—C4 | −175.78 (9) | C8—N1—C7—O1 | 1.74 (14) |
C1—C2—C3—C4 | 3.05 (13) | C9—N1—C7—O1 | 177.67 (9) |
C2—C3—C4—C5 | −1.73 (15) | C8—N1—C7—C6 | −171.90 (8) |
C3—C4—C5—C6 | −0.79 (15) | C9—N1—C7—C6 | 4.04 (13) |
C3—C4—C5—N3 | −177.86 (9) | C1—C6—C7—O1 | −91.10 (10) |
O3—N3—C5—C4 | 176.11 (9) | C5—C6—C7—O1 | 82.24 (12) |
O2—N3—C5—C4 | −3.35 (14) | C1—C6—C7—N1 | 82.91 (10) |
O3—N3—C5—C6 | −0.94 (14) | C5—C6—C7—N1 | −103.75 (10) |
O2—N3—C5—C6 | 179.61 (10) |
D—H···A | D—H | H···A | D···A | D—H···A |
C8—H8A···O3i | 0.96 | 2.52 | 3.1751 (16) | 126 |
C10—H10A···O2ii | 0.96 | 2.59 | 3.5413 (14) | 173 |
C10—H10B···O1iii | 0.96 | 2.49 | 3.3920 (13) | 156 |
C4—H4A···Cg1iv | 0.93 | 2.81 | 3.3991 (11) | 122 |
Symmetry codes: (i) −x+1, y+1/2, −z+1; (ii) x−1, y, z; (iii) −x, y−1/2, −z; (iv) −x+1, y−1/2, −z. |
Experimental details
Crystal data | |
Chemical formula | C11H15N3O3 |
Mr | 237.26 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 100 |
a, b, c (Å) | 7.8581 (2), 7.2921 (2), 10.5183 (3) |
β (°) | 104.663 (1) |
V (Å3) | 583.09 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.52 × 0.45 × 0.33 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.949, 0.965 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16075, 3233, 3002 |
Rint | 0.027 |
(sin θ/λ)max (Å−1) | 0.857 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.038, 0.103, 1.08 |
No. of reflections | 3233 |
No. of parameters | 158 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.64, −0.19 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C8—H8A···O3i | 0.96 | 2.52 | 3.1751 (16) | 126 |
C10—H10A···O2ii | 0.96 | 2.59 | 3.5413 (14) | 173 |
C10—H10B···O1iii | 0.96 | 2.49 | 3.3920 (13) | 156 |
C4—H4A···Cg1iv | 0.93 | 2.81 | 3.3991 (11) | 122 |
Symmetry codes: (i) −x+1, y+1/2, −z+1; (ii) x−1, y, z; (iii) −x, y−1/2, −z; (iv) −x+1, y−1/2, −z. |
Acknowledgements
HKF and SRJ thank the Malaysian Government and Universiti Sains Malaysia for the Science Fund grant No. 305/PFIZIK/613312. SRJ thanks Universiti Sains Malaysia for a post–doctoral research fellowship. HKF also thanks Universiti Sains Malaysia for the Research University Golden Goose grant No. 1001/PFIZIK/811012. AMI is grateful to the Head of the Chemistry Department and the Director, NITK, Surathkal, India, for providing research facilities.
References
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Nitroaniline mustards are potential hypoxia-selective cytotoxic agents (Rauth, 1984) possessing reductive metabolism which activates the mustard nitrogen by converting the electron-withdrawing nitro group to an electron-donating hydroxylamine or amine (Brian et al., 1992). N-[(N,N-dimethylamino)ethyl]carboxamide derivatives proved to have excellent aqueous solubility and improved cytotoxic potency (Denny et al., 1986), but their reduction potentials, while higher than the non carboxamide compounds, were still low and have limited selectivity for hypoxic cells. (Palmer et al., 1990; Alston et al., 1983). These properties prompted us to synthesize the title compound.
In the asymmetric unit of (I), (Fig 1), one of the methyl group attached to the benzamide unit is slightly twisted as indicated by the torsion angle of C9–N1–C7–C6=4.04 (13)°. The benzene ring is essentially planar with the maximum deviation from planarity of 0.0117 (10)Å for the atom C5. The bond lengths and bond angles are normal (Allen et al., 1987).
The crystal packing is stabilized by intermolecular weak C—H···O hydrogen bonds together with weak C—H···π interaction (Table 1, Fig. 2).