organic compounds
6-(1H-Indol-3-yl)-4-phenyl-2,2′-bipyridine-5-carbonitrile
aXuzhou College of Industrial Technology, Xuzhou 221140, People's Republic of China, bXuzhou Pharmaceutical College, Xuzhou 221116, People's Republic of China, and cXuzhou Medical College, Xuzhou 221002, People's Republic of China
*Correspondence e-mail: songleizhu@126.com
In the molecule of the title compound, C25H16N4, the pyridine rings are oriented at a dihedral angle of 0.92 (3)°, while the dihedral angle between the benzene ring and the adjacent pyridine ring is 56.51 (3)°. In the intermolecular N—H⋯N hydrogen bonds link the molecules into centrosymmetric dimers, forming R22(16) ring motifs. π–π contacts between the pyridine ring and the indole ring system and between the pyridine rings [centroid–centroid distances = 3.923 (2) and 3.724 (2) Å] may further stabilize the structure. Two weak C—H⋯π interactions are also present.
Related literature
For general background, see: da Silva et al. (2001); Joshi & Chand (1982); Namba et al. (2005). For a related structure, see: Zhu et al., (2008). For bond-length data, see: Allen et al. (1987). For ring-motifs, see: Bernstein et al. (1995).
Experimental
Crystal data
|
Refinement
|
Data collection: CrystalClear (Rigaku/MSC, 2001); cell CrystalClear; data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPII (Johnson, 1976) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 and PLATON.
Supporting information
10.1107/S1600536809016195/hk2679sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809016195/hk2679Isup2.hkl
The title compound was prepared by one-pot reaction of 3-cyanoacetyl indole (2 mmol), benzaldehyde (2 mmol) and 2-acetyl pyridine (2 mmol) in present of ammonium acetate in ethanol. After refluxing for 5 h, the reaction mixture was cooled and washed with small amount of cool ethanol. The crude product was filtered and single crystals of the title compound were obtained from ethanol solution by slow evaporation at room temperature (yield; 80%, m.p. 567-568 K). Spectroscopic analysis: IR (KBr, n, cm-1): 3337, 3050, 2218, 1573, 1535, 1438, 1214, 1145, 850, 745, 703. 1H NMR (400 MHz, DMSO-d6): 11.89 (br s, 1H, NH), 8.78 (d, J = 4.4 Hz, 1H, ArH), 8.58 (d, J = 8.0 Hz, 1H, ArH), 8.41 (d, J = 5.2 Hz, 2H, ArH), 8.31 (s, 1H, ArH), 8.11 (m, 1H, ArH), 7.79-7.81 (m, 2H, ArH), 7.56-7.66 (m, 5H, ArH), 7.24-7.29 (m, 2H, ArH)
H atoms were positioned geometrically, with N-H = 0.86 Å (for NH) and C-H = 0.93 Å for aromatic H and constrained to ride on their parent atoms with Uiso(H) = 1.2Ueq(C,N).
Data collection: CrystalClear (Rigaku/MSC, 2001); cell
CrystalClear (Rigaku/MSC, 2001); data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPII (Johnson, 1976) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).C25H16N4 | Z = 2 |
Mr = 372.42 | F(000) = 388 |
Triclinic, P1 | Dx = 1.342 Mg m−3 |
Hall symbol: -P 1 | Melting point = 567–568 K |
a = 9.7744 (16) Å | Mo Kα radiation, λ = 0.71070 Å |
b = 9.7927 (11) Å | Cell parameters from 3008 reflections |
c = 11.233 (2) Å | θ = 3.1–25.3° |
α = 73.121 (13)° | µ = 0.08 mm−1 |
β = 86.008 (16)° | T = 291 K |
γ = 63.853 (10)° | Block, yellow |
V = 921.5 (3) Å3 | 0.55 × 0.35 × 0.30 mm |
Rigaku Mercury diffractometer | 3349 independent reflections |
Radiation source: fine-focus sealed tube | 2614 reflections with I > 2/s(I) |
Graphite monochromator | Rint = 0.027 |
Detector resolution: 7.31 pixels mm-1 | θmax = 25.3°, θmin = 3.1° |
ω scans | h = −11→11 |
Absorption correction: multi-scan (ABSCOR; Jacobson, 1998) | k = −10→11 |
Tmin = 0.966, Tmax = 0.976 | l = −13→13 |
8987 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.054 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.126 | H-atom parameters constrained |
S = 1.12 | w = 1/[σ2(Fo2) + (0.0538P)2 + 0.1499P] where P = (Fo2 + 2Fc2)/3 |
3349 reflections | (Δ/σ)max < 0.001 |
263 parameters | Δρmax = 0.16 e Å−3 |
0 restraints | Δρmin = −0.21 e Å−3 |
C25H16N4 | γ = 63.853 (10)° |
Mr = 372.42 | V = 921.5 (3) Å3 |
Triclinic, P1 | Z = 2 |
a = 9.7744 (16) Å | Mo Kα radiation |
b = 9.7927 (11) Å | µ = 0.08 mm−1 |
c = 11.233 (2) Å | T = 291 K |
α = 73.121 (13)° | 0.55 × 0.35 × 0.30 mm |
β = 86.008 (16)° |
Rigaku Mercury diffractometer | 3349 independent reflections |
Absorption correction: multi-scan (ABSCOR; Jacobson, 1998) | 2614 reflections with I > 2/s(I) |
Tmin = 0.966, Tmax = 0.976 | Rint = 0.027 |
8987 measured reflections |
R[F2 > 2σ(F2)] = 0.054 | 0 restraints |
wR(F2) = 0.126 | H-atom parameters constrained |
S = 1.12 | Δρmax = 0.16 e Å−3 |
3349 reflections | Δρmin = −0.21 e Å−3 |
263 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.94201 (16) | 0.20772 (17) | 0.54741 (13) | 0.0355 (4) | |
N2 | 1.20413 (18) | 0.3774 (2) | 0.44026 (14) | 0.0455 (4) | |
N3 | 0.5855 (2) | 0.1895 (2) | 0.28547 (16) | 0.0606 (5) | |
N4 | 0.64100 (17) | −0.04598 (18) | 0.69177 (14) | 0.0422 (4) | |
H4 | 0.5936 | −0.1043 | 0.7025 | 0.051* | |
C1 | 1.01436 (19) | 0.2799 (2) | 0.46717 (16) | 0.0347 (4) | |
C2 | 0.98275 (19) | 0.3310 (2) | 0.33960 (16) | 0.0371 (4) | |
H2 | 1.0382 | 0.3776 | 0.2873 | 0.045* | |
C3 | 0.86846 (19) | 0.3126 (2) | 0.28960 (16) | 0.0353 (4) | |
C4 | 0.79281 (19) | 0.2362 (2) | 0.37308 (16) | 0.0348 (4) | |
C5 | 0.83308 (19) | 0.1829 (2) | 0.50305 (16) | 0.0334 (4) | |
C6 | 1.13427 (19) | 0.3032 (2) | 0.52184 (16) | 0.0354 (4) | |
C7 | 1.1727 (2) | 0.2494 (2) | 0.64913 (18) | 0.0449 (5) | |
H7 | 1.1226 | 0.1981 | 0.7039 | 0.054* | |
C8 | 1.2862 (2) | 0.2731 (3) | 0.6929 (2) | 0.0519 (5) | |
H8 | 1.3135 | 0.2383 | 0.7779 | 0.062* | |
C9 | 1.3586 (2) | 0.3482 (2) | 0.6104 (2) | 0.0494 (5) | |
H9 | 1.4361 | 0.3648 | 0.6378 | 0.059* | |
C10 | 1.3136 (2) | 0.3981 (3) | 0.4861 (2) | 0.0521 (5) | |
H10 | 1.3625 | 0.4497 | 0.4302 | 0.063* | |
C11 | 0.8284 (2) | 0.3777 (2) | 0.15322 (16) | 0.0379 (4) | |
C12 | 0.9407 (2) | 0.3356 (2) | 0.07066 (17) | 0.0445 (5) | |
H12 | 1.0400 | 0.2617 | 0.1010 | 0.053* | |
C13 | 0.9065 (3) | 0.4026 (3) | −0.05660 (18) | 0.0529 (6) | |
H13 | 0.9823 | 0.3725 | −0.1114 | 0.063* | |
C14 | 0.7602 (3) | 0.5140 (3) | −0.10229 (19) | 0.0555 (6) | |
H14 | 0.7376 | 0.5599 | −0.1878 | 0.067* | |
C15 | 0.6484 (3) | 0.5570 (3) | −0.02151 (19) | 0.0532 (6) | |
H15 | 0.5498 | 0.6323 | −0.0525 | 0.064* | |
C16 | 0.6809 (2) | 0.4891 (2) | 0.10587 (18) | 0.0460 (5) | |
H16 | 0.6039 | 0.5181 | 0.1600 | 0.055* | |
C17 | 0.6772 (2) | 0.2108 (2) | 0.32443 (17) | 0.0423 (5) | |
C18 | 0.7603 (2) | 0.1025 (2) | 0.59690 (16) | 0.0352 (4) | |
C19 | 0.6856 (2) | 0.0176 (2) | 0.58127 (17) | 0.0385 (4) | |
H19 | 0.6682 | 0.0056 | 0.5054 | 0.046* | |
C20 | 0.6833 (2) | −0.0028 (2) | 0.78422 (17) | 0.0380 (4) | |
C21 | 0.6582 (2) | −0.0376 (2) | 0.90989 (18) | 0.0476 (5) | |
H21 | 0.6081 | −0.1001 | 0.9444 | 0.057* | |
C22 | 0.7105 (3) | 0.0240 (3) | 0.98141 (19) | 0.0568 (6) | |
H22 | 0.6957 | 0.0029 | 1.0663 | 0.068* | |
C23 | 0.7851 (3) | 0.1175 (3) | 0.92946 (19) | 0.0601 (6) | |
H23 | 0.8188 | 0.1581 | 0.9803 | 0.072* | |
C24 | 0.8104 (2) | 0.1515 (3) | 0.80452 (18) | 0.0507 (5) | |
H24 | 0.8605 | 0.2143 | 0.7711 | 0.061* | |
C25 | 0.7595 (2) | 0.0901 (2) | 0.72879 (16) | 0.0366 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0353 (8) | 0.0367 (9) | 0.0374 (8) | −0.0191 (7) | 0.0027 (7) | −0.0097 (7) |
N2 | 0.0430 (9) | 0.0583 (11) | 0.0475 (9) | −0.0321 (8) | 0.0058 (8) | −0.0173 (8) |
N3 | 0.0675 (12) | 0.0748 (13) | 0.0507 (10) | −0.0502 (11) | −0.0130 (9) | 0.0006 (9) |
N4 | 0.0439 (9) | 0.0449 (9) | 0.0476 (9) | −0.0298 (8) | 0.0052 (7) | −0.0109 (7) |
C1 | 0.0320 (9) | 0.0349 (10) | 0.0378 (10) | −0.0153 (8) | 0.0024 (8) | −0.0102 (8) |
C2 | 0.0336 (9) | 0.0415 (11) | 0.0369 (10) | −0.0206 (8) | 0.0024 (8) | −0.0058 (8) |
C3 | 0.0354 (10) | 0.0346 (10) | 0.0355 (10) | −0.0159 (8) | 0.0005 (8) | −0.0081 (8) |
C4 | 0.0346 (9) | 0.0346 (10) | 0.0362 (10) | −0.0172 (8) | 0.0001 (8) | −0.0082 (8) |
C5 | 0.0329 (9) | 0.0314 (9) | 0.0385 (10) | −0.0157 (8) | 0.0034 (8) | −0.0114 (8) |
C6 | 0.0319 (9) | 0.0355 (10) | 0.0407 (10) | −0.0152 (8) | 0.0036 (8) | −0.0134 (8) |
C7 | 0.0452 (11) | 0.0490 (12) | 0.0415 (11) | −0.0237 (10) | −0.0025 (9) | −0.0083 (9) |
C8 | 0.0514 (12) | 0.0575 (13) | 0.0492 (12) | −0.0256 (11) | −0.0101 (10) | −0.0131 (10) |
C9 | 0.0334 (10) | 0.0567 (13) | 0.0663 (14) | −0.0199 (10) | −0.0016 (10) | −0.0281 (11) |
C10 | 0.0458 (12) | 0.0661 (14) | 0.0611 (13) | −0.0364 (11) | 0.0121 (10) | −0.0249 (11) |
C11 | 0.0418 (10) | 0.0419 (11) | 0.0360 (10) | −0.0255 (9) | 0.0003 (8) | −0.0080 (8) |
C12 | 0.0459 (11) | 0.0509 (12) | 0.0399 (11) | −0.0266 (10) | 0.0016 (9) | −0.0089 (9) |
C13 | 0.0668 (14) | 0.0664 (15) | 0.0398 (11) | −0.0420 (13) | 0.0114 (10) | −0.0171 (10) |
C14 | 0.0770 (16) | 0.0650 (15) | 0.0357 (11) | −0.0472 (13) | −0.0048 (11) | −0.0026 (10) |
C15 | 0.0566 (13) | 0.0545 (13) | 0.0463 (12) | −0.0306 (11) | −0.0118 (11) | 0.0018 (10) |
C16 | 0.0448 (11) | 0.0539 (12) | 0.0410 (10) | −0.0260 (10) | −0.0005 (9) | −0.0085 (9) |
C17 | 0.0457 (11) | 0.0469 (12) | 0.0382 (10) | −0.0283 (10) | 0.0001 (9) | −0.0042 (9) |
C18 | 0.0334 (9) | 0.0345 (10) | 0.0388 (10) | −0.0164 (8) | 0.0030 (8) | −0.0098 (8) |
C19 | 0.0408 (10) | 0.0398 (11) | 0.0387 (10) | −0.0215 (9) | 0.0030 (8) | −0.0109 (8) |
C20 | 0.0339 (10) | 0.0373 (10) | 0.0436 (11) | −0.0174 (8) | 0.0041 (8) | −0.0105 (8) |
C21 | 0.0476 (12) | 0.0545 (13) | 0.0449 (11) | −0.0305 (10) | 0.0111 (9) | −0.0091 (10) |
C22 | 0.0709 (15) | 0.0729 (15) | 0.0377 (11) | −0.0436 (13) | 0.0129 (10) | −0.0146 (11) |
C23 | 0.0815 (16) | 0.0805 (16) | 0.0432 (12) | −0.0570 (14) | 0.0122 (11) | −0.0205 (11) |
C24 | 0.0656 (14) | 0.0626 (13) | 0.0424 (11) | −0.0457 (12) | 0.0096 (10) | −0.0145 (10) |
C25 | 0.0356 (10) | 0.0374 (10) | 0.0394 (10) | −0.0199 (8) | 0.0033 (8) | −0.0091 (8) |
N1—C1 | 1.339 (2) | C11—C12 | 1.385 (3) |
N1—C5 | 1.347 (2) | C11—C16 | 1.391 (3) |
N2—C10 | 1.334 (2) | C12—C13 | 1.384 (3) |
N2—C6 | 1.341 (2) | C12—H12 | 0.9300 |
N3—C17 | 1.144 (2) | C13—C14 | 1.378 (3) |
N4—C19 | 1.354 (2) | C13—H13 | 0.9300 |
N4—C20 | 1.377 (2) | C14—C15 | 1.369 (3) |
N4—H4 | 0.8600 | C14—H14 | 0.9300 |
C1—C2 | 1.381 (2) | C15—C16 | 1.384 (3) |
C1—C6 | 1.490 (2) | C15—H15 | 0.9300 |
C2—C3 | 1.385 (2) | C16—H16 | 0.9300 |
C2—H2 | 0.9300 | C18—C19 | 1.375 (2) |
C3—C4 | 1.404 (2) | C18—C25 | 1.451 (2) |
C3—C11 | 1.484 (2) | C19—H19 | 0.9300 |
C4—C5 | 1.420 (2) | C20—C21 | 1.384 (3) |
C4—C17 | 1.432 (2) | C20—C25 | 1.405 (2) |
C5—C18 | 1.465 (2) | C21—C22 | 1.372 (3) |
C6—C7 | 1.388 (2) | C21—H21 | 0.9300 |
C7—C8 | 1.377 (3) | C22—C23 | 1.389 (3) |
C7—H7 | 0.9300 | C22—H22 | 0.9300 |
C8—C9 | 1.368 (3) | C23—C24 | 1.376 (3) |
C8—H8 | 0.9300 | C23—H23 | 0.9300 |
C9—C10 | 1.371 (3) | C24—C25 | 1.398 (3) |
C9—H9 | 0.9300 | C24—H24 | 0.9300 |
C10—H10 | 0.9300 | ||
C1—N1—C5 | 119.18 (15) | C13—C12—H12 | 119.7 |
C10—N2—C6 | 117.30 (17) | C11—C12—H12 | 119.7 |
C19—N4—C20 | 109.41 (15) | C14—C13—C12 | 120.1 (2) |
C19—N4—H4 | 125.3 | C14—C13—H13 | 119.9 |
C20—N4—H4 | 125.3 | C12—C13—H13 | 119.9 |
N1—C1—C2 | 123.09 (15) | C15—C14—C13 | 119.85 (19) |
N1—C1—C6 | 116.67 (15) | C15—C14—H14 | 120.1 |
C2—C1—C6 | 120.24 (16) | C13—C14—H14 | 120.1 |
C1—C2—C3 | 119.94 (16) | C14—C15—C16 | 120.5 (2) |
C1—C2—H2 | 120.0 | C14—C15—H15 | 119.8 |
C3—C2—H2 | 120.0 | C16—C15—H15 | 119.8 |
C2—C3—C4 | 117.25 (16) | C15—C16—C11 | 120.2 (2) |
C2—C3—C11 | 119.47 (16) | C15—C16—H16 | 119.9 |
C4—C3—C11 | 123.25 (15) | C11—C16—H16 | 119.9 |
C3—C4—C5 | 120.12 (15) | N3—C17—C4 | 179.5 (2) |
C3—C4—C17 | 118.82 (15) | C19—C18—C25 | 105.64 (15) |
C5—C4—C17 | 121.05 (16) | C19—C18—C5 | 128.12 (16) |
N1—C5—C4 | 120.37 (15) | C25—C18—C5 | 126.18 (15) |
N1—C5—C18 | 115.71 (15) | N4—C19—C18 | 110.50 (16) |
C4—C5—C18 | 123.91 (15) | N4—C19—H19 | 124.7 |
N2—C6—C7 | 122.15 (16) | C18—C19—H19 | 124.7 |
N2—C6—C1 | 115.83 (15) | N4—C20—C21 | 129.29 (17) |
C7—C6—C1 | 122.01 (16) | N4—C20—C25 | 107.56 (15) |
C8—C7—C6 | 118.82 (18) | C21—C20—C25 | 123.15 (17) |
C8—C7—H7 | 120.6 | C22—C21—C20 | 117.15 (18) |
C6—C7—H7 | 120.6 | C22—C21—H21 | 121.4 |
C9—C8—C7 | 119.50 (19) | C20—C21—H21 | 121.4 |
C9—C8—H8 | 120.2 | C21—C22—C23 | 121.23 (19) |
C7—C8—H8 | 120.2 | C21—C22—H22 | 119.4 |
C8—C9—C10 | 118.03 (18) | C23—C22—H22 | 119.4 |
C8—C9—H9 | 121.0 | C24—C23—C22 | 121.5 (2) |
C10—C9—H9 | 121.0 | C24—C23—H23 | 119.2 |
N2—C10—C9 | 124.20 (19) | C22—C23—H23 | 119.2 |
N2—C10—H10 | 117.9 | C23—C24—C25 | 118.88 (18) |
C9—C10—H10 | 117.9 | C23—C24—H24 | 120.6 |
C12—C11—C16 | 118.78 (17) | C25—C24—H24 | 120.6 |
C12—C11—C3 | 119.99 (16) | C24—C25—C20 | 118.06 (17) |
C16—C11—C3 | 121.11 (17) | C24—C25—C18 | 135.01 (17) |
C13—C12—C11 | 120.51 (19) | C20—C25—C18 | 106.88 (15) |
C5—N1—C1—C2 | 0.0 (3) | C16—C11—C12—C13 | −0.3 (3) |
C5—N1—C1—C6 | −179.68 (15) | C3—C11—C12—C13 | −176.21 (17) |
N1—C1—C2—C3 | 2.0 (3) | C11—C12—C13—C14 | 1.0 (3) |
C6—C1—C2—C3 | −178.34 (16) | C12—C13—C14—C15 | −0.7 (3) |
C1—C2—C3—C4 | −2.2 (3) | C13—C14—C15—C16 | −0.1 (3) |
C1—C2—C3—C11 | 175.87 (17) | C14—C15—C16—C11 | 0.8 (3) |
C2—C3—C4—C5 | 0.7 (3) | C12—C11—C16—C15 | −0.5 (3) |
C11—C3—C4—C5 | −177.30 (16) | C3—C11—C16—C15 | 175.28 (17) |
C2—C3—C4—C17 | −178.14 (16) | N1—C5—C18—C19 | −157.15 (17) |
C11—C3—C4—C17 | 3.8 (3) | C4—C5—C18—C19 | 24.1 (3) |
C1—N1—C5—C4 | −1.6 (2) | N1—C5—C18—C25 | 19.5 (3) |
C1—N1—C5—C18 | 179.67 (15) | C4—C5—C18—C25 | −159.21 (17) |
C3—C4—C5—N1 | 1.2 (3) | C20—N4—C19—C18 | 0.8 (2) |
C17—C4—C5—N1 | −179.95 (17) | C25—C18—C19—N4 | −0.5 (2) |
C3—C4—C5—C18 | 179.84 (16) | C5—C18—C19—N4 | 176.68 (17) |
C17—C4—C5—C18 | −1.3 (3) | C19—N4—C20—C21 | 178.41 (19) |
C10—N2—C6—C7 | 0.0 (3) | C19—N4—C20—C25 | −0.8 (2) |
C10—N2—C6—C1 | −179.08 (16) | N4—C20—C21—C22 | −178.64 (19) |
N1—C1—C6—N2 | −179.21 (15) | C25—C20—C21—C22 | 0.5 (3) |
C2—C1—C6—N2 | 1.1 (3) | C20—C21—C22—C23 | 0.1 (3) |
N1—C1—C6—C7 | 1.7 (3) | C21—C22—C23—C24 | −0.3 (4) |
C2—C1—C6—C7 | −178.01 (17) | C22—C23—C24—C25 | 0.0 (4) |
N2—C6—C7—C8 | 0.0 (3) | C23—C24—C25—C20 | 0.6 (3) |
C1—C6—C7—C8 | 179.07 (17) | C23—C24—C25—C18 | 177.8 (2) |
C6—C7—C8—C9 | −0.3 (3) | N4—C20—C25—C24 | 178.46 (16) |
C7—C8—C9—C10 | 0.4 (3) | C21—C20—C25—C24 | −0.8 (3) |
C6—N2—C10—C9 | 0.2 (3) | N4—C20—C25—C18 | 0.5 (2) |
C8—C9—C10—N2 | −0.4 (3) | C21—C20—C25—C18 | −178.79 (17) |
C2—C3—C11—C12 | 54.4 (2) | C19—C18—C25—C24 | −177.5 (2) |
C4—C3—C11—C12 | −127.63 (19) | C5—C18—C25—C24 | 5.3 (3) |
C2—C3—C11—C16 | −121.39 (19) | C19—C18—C25—C20 | 0.0 (2) |
C4—C3—C11—C16 | 56.6 (3) | C5—C18—C25—C20 | −177.27 (16) |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4···N3i | 0.86 | 2.23 | 3.066 (2) | 164 |
C12—H12···Cg5ii | 0.93 | 2.84 | 3.649 (3) | 146 |
C23—H23···Cg4iii | 0.93 | 2.91 | 3.711 (3) | 145 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x, −y+2, −z+1; (iii) x, y, z−1. |
Experimental details
Crystal data | |
Chemical formula | C25H16N4 |
Mr | 372.42 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 291 |
a, b, c (Å) | 9.7744 (16), 9.7927 (11), 11.233 (2) |
α, β, γ (°) | 73.121 (13), 86.008 (16), 63.853 (10) |
V (Å3) | 921.5 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.55 × 0.35 × 0.30 |
Data collection | |
Diffractometer | Rigaku Mercury diffractometer |
Absorption correction | Multi-scan (ABSCOR; Jacobson, 1998) |
Tmin, Tmax | 0.966, 0.976 |
No. of measured, independent and observed [I > 2/s(I)] reflections | 8987, 3349, 2614 |
Rint | 0.027 |
(sin θ/λ)max (Å−1) | 0.602 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.054, 0.126, 1.12 |
No. of reflections | 3349 |
No. of parameters | 263 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.16, −0.21 |
Computer programs: CrystalClear (Rigaku/MSC, 2001), CrystalStructure (Rigaku/MSC, 2004), SHELXS97 (Sheldrick, 2008), ORTEPII (Johnson, 1976) and PLATON (Spek, 2009), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4···N3i | 0.86 | 2.23 | 3.066 (2) | 164 |
C12—H12···Cg5ii | 0.93 | 2.84 | 3.649 (3) | 146 |
C23—H23···Cg4iii | 0.93 | 2.91 | 3.711 (3) | 145 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x, −y+2, −z+1; (iii) x, y, z−1. |
Acknowledgements
This work was sponsored by the `Qing Lan' Project of Jiangsu Province for Excellent Young Teachers of XuZhou College of Industrial Technology, and the Special Foundation of the President of Xuzhou Medical College.
References
Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19. CrossRef Web of Science Google Scholar
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573. CrossRef CAS Web of Science Google Scholar
Jacobson, R. (1998). ABSCOR. Private communication to the Rigaku Corporation, Tokyo, Japan. Google Scholar
Johnson, C. K. (1976). ORTEPII. Report ORNL-5138. Oak Ridge National Laboratory, Tennessee, USA. Google Scholar
Joshi, K. C. & Chand, P. (1982). Pharmazie, 37, 1–12. CAS PubMed Web of Science Google Scholar
Namba, K., Cui, S., Wang, J. & Kishi, Y. (2005). Org. Lett. 7, 5417–5419. Web of Science CrossRef PubMed CAS Google Scholar
Rigaku/MSC (2001). CrystalClear. Rigaku/MSC, The Woodlands, Texas, USA. Google Scholar
Rigaku/MSC (2004). CrystalStructure. Rigaku/MSC, The Woodlands, Texas, USA. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Silva, J. F. M. da, Garden, S. J. & Pinto, A. C. (2001). J. Braz. Chem. Soc. 12, 273–324. CrossRef Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Zhu, S. L., Ji, S. J., Zhao, K. & Liu, Y. (2008). Tetrahedron Lett. 49, 2578–2582. Web of Science CSD CrossRef CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Indole nucleus is a well known heterocycle (da Silva et al., 2001). Compounds carrying the indole moiety exhibit antibacterial and fungicidal activities (Joshi & Chand, 1982). Moreover, the bipyridines and the related complexes have also found numerous applications in asymmetric catalysis, photoinduced electron transfer, and polymer and dendrimer science (Namba et al., 2005). As a part of our programme devoted to the preparation of functionalized indole derivatives, we synthesized a series of indole substituted heterocycles (Zhu et al., 2008). We report herein the crystal structure of the title compound.
In the molecule of the title compound (Fig 1), the bond lengths (Allen et al., 1987) and angles are within normal ranges. The indole ring system A (N4/C18-C25) is planar with a maximum deviation of -0.021 (3) Å for atom C25. Rings B (N1/C1-C5), C (N2/C6-C10) and D (C11-C16) are, of course, planar, and they are oriented at dihedral angles of A/B = 23.01 (3), A/C = 23.61 (3), A/D = 74.90 (3), B/C = 0.92 (3), B/D = 56.51 (3) and C/D = 56.51 (3) °. So, rings B and C are nearly coplanar.
In the crystal structure, intermolecular N-H···N hydrogen bonds (Table 1) link the molecules into centrosymmetric dimers forming R22(16) ring motifs (Fig. 2) (Bernstein et al., 1995), in which they may be effective in the stabilization of the structure. The π–π contacts between the pyridine ring and the indole ring system and the pyridine rings, Cg1—Cg2i and Cg2—Cg3ii [symmetry codes: (i) -x, 2 - y, 1 - z, (ii) -x, 1 - y, 1 - z, where Cg1, Cg2 and Cg3 are centroids of the rings (N4/C18-C20/C25), B (N1/C1-C5) and C (N2/C6-C10), respectively] may further stabilize the structure, with centroid-centroid distances of 3.923 (2) and 3.724 (2) Å. There also exist two weak C—H···π interactions (Table 1).