metal-organic compounds
Redetermination of bis(O,O′-diethyl dithiophosphato-κ2S,S′)nickel(II)
aDepartment of Inorganic Chemistry, Chemical Faculty, Gdańsk University of Technology, 11/12 G. Narutowicza Str., 80-233 Gdańsk, Poland
*Correspondence e-mail: bbecker@chem.pg.gda.pl
The centrosymmetric title complex, [Ni{S2P(OC2H5)2}2], has been redetermined using area-detector data. The central Ni(S2P)2 core is essentially planar and confirms the early results of McConnell & Kastalsky [Acta Cryst. (1967), 22, 853–859] based on multiple film technique data. In the title structure, the values are approximately seven times lower and all H-atom positions are calculated. A pair of short symmetry-related H⋯H contacts with distances of 2.33 Å is observed in the crystal structure.
Related literature
For the syntheses and structure of a series of homologous Ni(S2P{OR}2)2 complexes, see: R = Me: Kastalsky & McConnell (1969); R = Et: Fernando & Green (1967); McConnell & Kastalsky (1967); R = Pr and R = iBu: Ivanov et al. (2004); R = iPr: Tkachev & Atovmyan (1976); Hoskins & Tiekink (1985). For complexes with sulfur-rich kernel-bearing silanethiolato and dithiocarbamato ligands, see: Kropidłowska et al. (2008). For hydrogen bonds, see: Steiner & Desiraju (1998).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis CCD (Oxford Diffraction, 2008); cell CrysAlis RED (Oxford Diffraction, 2008); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and Mercury (Macrae et al., 2006); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S160053680901767X/si2169sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053680901767X/si2169Isup2.hkl
Nickel chloride, NiCl2×6H2O (0.60 g; 0.0025 mol; POCh) was dissolved in 30 ml me thanol/water (10/1, v/v) and added dropwise to the solution of ammonium salt of diethyldithiophosphate (1.02 g; 0.005 mol; Aldrich) in 20 ml me thanol/water (10/1, v/v). The mixture was stirred vigorously for one hour. The solution was then filtered off and the filtrate was left for crystallization at room temperature. After one day well shaped, violet prismatic crystals suitable for X-ray analysis were collected. Then, the mother liquor was concentrated and after few days more product was isolated. The overall yield was c.a. ~90%.
All H atoms were placed in calculated positions and refined as riding on their carrier atoms with respective Uiso(H) values: C—H = 0.96 Å (CH3) and Uiso(H) = 1.5 Ueq(C), C—H = 0.97 Å (CH2) and Uĩso(H) = 1.2 Ueq(C).
Data collection: CrysAlis CCD (Oxford Diffraction, 2008); cell
CrysAlis RED (Oxford Diffraction, 2008); data reduction: CrysAlis RED (Oxford Diffraction, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and Mercury (Macrae et al., 2006); software used to prepare material for publication: WinGX (Farrugia, 1999).[Ni(C4H10O2PS2)2] | F(000) = 444 |
Mr = 429.13 | Dx = 1.55 Mg m−3 |
Monoclinic, P21/c | Melting point: 378 K |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 10.4810 (4) Å | Cell parameters from 5670 reflections |
b = 10.2777 (3) Å | θ = 2.0–32.3° |
c = 8.7541 (3) Å | µ = 1.69 mm−1 |
β = 102.820 (3)° | T = 295 K |
V = 919.49 (6) Å3 | Prism, violet |
Z = 2 | 0.41 × 0.34 × 0.09 mm |
Oxford Diffraction KM-4-CCD diffractometer | 2012 independent reflections |
Graphite monochromator | 1768 reflections with I > 2σ(I) |
Detector resolution: 8.1883 pixels mm-1 | Rint = 0.016 |
ω (0.75° width) scans | θmax = 27.0°, θmin = 2.8° |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008) | h = −13→13 |
Tmin = 0.530, Tmax = 0.853 | k = −7→13 |
7073 measured reflections | l = −11→11 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.031 | H-atom parameters constrained |
wR(F2) = 0.083 | w = 1/[σ2(Fo2) + (0.0441P)2 + 0.3217P] where P = (Fo2 + 2Fc2)/3 |
S = 1.09 | (Δ/σ)max = 0.001 |
2012 reflections | Δρmax = 0.30 e Å−3 |
91 parameters | Δρmin = −0.32 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.027 (2) |
[Ni(C4H10O2PS2)2] | V = 919.49 (6) Å3 |
Mr = 429.13 | Z = 2 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.4810 (4) Å | µ = 1.69 mm−1 |
b = 10.2777 (3) Å | T = 295 K |
c = 8.7541 (3) Å | 0.41 × 0.34 × 0.09 mm |
β = 102.820 (3)° |
Oxford Diffraction KM-4-CCD diffractometer | 2012 independent reflections |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008) | 1768 reflections with I > 2σ(I) |
Tmin = 0.530, Tmax = 0.853 | Rint = 0.016 |
7073 measured reflections |
R[F2 > 2σ(F2)] = 0.031 | 0 restraints |
wR(F2) = 0.083 | H-atom parameters constrained |
S = 1.09 | Δρmax = 0.30 e Å−3 |
2012 reflections | Δρmin = −0.32 e Å−3 |
91 parameters |
Experimental. Oxford Diffraction Ltd., 2008. Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Ni1 | 0 | 1 | 0 | 0.04253 (14) | |
P1 | −0.23354 (5) | 0.94137 (6) | 0.09934 (7) | 0.04844 (17) | |
S1 | −0.07705 (6) | 0.82989 (6) | 0.10854 (9) | 0.0633 (2) | |
S2 | −0.18740 (6) | 1.10251 (6) | −0.00212 (8) | 0.06062 (19) | |
O1 | −0.36674 (16) | 0.87744 (19) | 0.01719 (18) | 0.0621 (4) | |
O2 | −0.26962 (16) | 0.96353 (18) | 0.26213 (18) | 0.0583 (4) | |
C1 | −0.3979 (3) | 0.8474 (3) | −0.1498 (3) | 0.0745 (8) | |
H1A | −0.3223 | 0.8095 | −0.1799 | 0.089* | |
H1B | −0.4217 | 0.9263 | −0.2102 | 0.089* | |
C2 | −0.5078 (3) | 0.7549 (3) | −0.1810 (4) | 0.0786 (8) | |
H2A | −0.4839 | 0.6779 | −0.1192 | 0.118* | |
H2B | −0.5282 | 0.7322 | −0.2901 | 0.118* | |
H2C | −0.5829 | 0.7942 | −0.1539 | 0.118* | |
C3 | −0.1754 (3) | 1.0198 (4) | 0.3917 (4) | 0.0835 (9) | |
H3A | −0.1529 | 1.1071 | 0.3648 | 0.1* | |
H3B | −0.0962 | 0.9678 | 0.4135 | 0.1* | |
C4 | −0.2321 (4) | 1.0239 (3) | 0.5302 (3) | 0.0873 (9) | |
H4A | −0.3118 | 1.0732 | 0.507 | 0.131* | |
H4B | −0.1713 | 1.0642 | 0.6153 | 0.131* | |
H4C | −0.2503 | 0.9369 | 0.5592 | 0.131* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ni1 | 0.0394 (2) | 0.0400 (2) | 0.0513 (2) | −0.00037 (13) | 0.01666 (15) | 0.00300 (14) |
P1 | 0.0433 (3) | 0.0526 (3) | 0.0531 (3) | −0.0052 (2) | 0.0188 (2) | 0.0003 (2) |
S1 | 0.0587 (4) | 0.0458 (3) | 0.0936 (5) | 0.0031 (2) | 0.0342 (3) | 0.0150 (3) |
S2 | 0.0514 (3) | 0.0525 (3) | 0.0849 (4) | 0.0098 (2) | 0.0300 (3) | 0.0166 (3) |
O1 | 0.0524 (9) | 0.0873 (12) | 0.0500 (8) | −0.0183 (8) | 0.0184 (7) | −0.0112 (8) |
O2 | 0.0519 (9) | 0.0756 (10) | 0.0502 (8) | −0.0125 (8) | 0.0171 (7) | −0.0067 (8) |
C1 | 0.0777 (18) | 0.097 (2) | 0.0518 (13) | −0.0140 (16) | 0.0204 (12) | −0.0100 (13) |
C2 | 0.0576 (15) | 0.100 (2) | 0.0758 (17) | −0.0038 (15) | 0.0089 (12) | −0.0278 (16) |
C3 | 0.0717 (18) | 0.113 (2) | 0.0635 (16) | −0.0253 (17) | 0.0093 (13) | −0.0236 (16) |
C4 | 0.108 (3) | 0.093 (2) | 0.0587 (16) | −0.0009 (19) | 0.0146 (16) | −0.0152 (15) |
Ni1—S2 | 2.2253 (6) | C1—C2 | 1.472 (4) |
Ni1—S2i | 2.2253 (6) | C1—H1A | 0.97 |
Ni1—S1 | 2.2254 (6) | C1—H1B | 0.97 |
Ni1—S1i | 2.2254 (6) | C2—H2A | 0.96 |
Ni1—P1 | 2.8382 (5) | C2—H2B | 0.96 |
Ni1—P1i | 2.8382 (5) | C2—H2C | 0.96 |
P1—O1 | 1.5660 (17) | C3—C4 | 1.464 (4) |
P1—O2 | 1.5700 (16) | C3—H3A | 0.97 |
P1—S1 | 1.9876 (8) | C3—H3B | 0.97 |
P1—S2 | 1.9890 (8) | C4—H4A | 0.96 |
O1—C1 | 1.459 (3) | C4—H4B | 0.96 |
O2—C3 | 1.449 (3) | C4—H4C | 0.96 |
S2—Ni1—S2i | 180 | C1—O1—P1 | 121.83 (15) |
S2—Ni1—S1 | 88.41 (2) | C3—O2—P1 | 120.60 (17) |
S2i—Ni1—S1 | 91.59 (2) | O1—C1—C2 | 108.3 (2) |
S2—Ni1—S1i | 91.59 (2) | O1—C1—H1A | 110 |
S2i—Ni1—S1i | 88.41 (2) | C2—C1—H1A | 110 |
S1—Ni1—S1i | 180 | O1—C1—H1B | 110 |
S2—Ni1—P1 | 44.230 (19) | C2—C1—H1B | 110 |
S2i—Ni1—P1 | 135.770 (19) | H1A—C1—H1B | 108.4 |
S1—Ni1—P1 | 44.194 (19) | C1—C2—H2A | 109.5 |
S1i—Ni1—P1 | 135.81 (2) | C1—C2—H2B | 109.5 |
S2—Ni1—P1i | 135.770 (19) | H2A—C2—H2B | 109.5 |
S2i—Ni1—P1i | 44.230 (19) | C1—C2—H2C | 109.5 |
S1—Ni1—P1i | 135.81 (2) | H2A—C2—H2C | 109.5 |
S1i—Ni1—P1i | 44.194 (19) | H2B—C2—H2C | 109.5 |
P1—Ni1—P1i | 180 | O2—C3—C4 | 109.2 (3) |
O1—P1—O2 | 96.20 (9) | O2—C3—H3A | 109.8 |
O1—P1—S1 | 114.85 (8) | C4—C3—H3A | 109.8 |
O2—P1—S1 | 114.18 (8) | O2—C3—H3B | 109.8 |
O1—P1—S2 | 115.13 (8) | C4—C3—H3B | 109.8 |
O2—P1—S2 | 114.58 (8) | H3A—C3—H3B | 108.3 |
S1—P1—S2 | 102.58 (3) | C3—C4—H4A | 109.5 |
O1—P1—Ni1 | 133.63 (6) | C3—C4—H4B | 109.5 |
O2—P1—Ni1 | 130.17 (6) | H4A—C4—H4B | 109.5 |
S1—P1—Ni1 | 51.30 (2) | C3—C4—H4C | 109.5 |
S2—P1—Ni1 | 51.30 (2) | H4A—C4—H4C | 109.5 |
P1—S1—Ni1 | 84.50 (3) | H4B—C4—H4C | 109.5 |
P1—S2—Ni1 | 84.47 (3) |
Symmetry code: (i) −x, −y+2, −z. |
Experimental details
Crystal data | |
Chemical formula | [Ni(C4H10O2PS2)2] |
Mr | 429.13 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 295 |
a, b, c (Å) | 10.4810 (4), 10.2777 (3), 8.7541 (3) |
β (°) | 102.820 (3) |
V (Å3) | 919.49 (6) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.69 |
Crystal size (mm) | 0.41 × 0.34 × 0.09 |
Data collection | |
Diffractometer | Oxford Diffraction KM-4-CCD diffractometer |
Absorption correction | Multi-scan (CrysAlis RED; Oxford Diffraction, 2008) |
Tmin, Tmax | 0.530, 0.853 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7073, 2012, 1768 |
Rint | 0.016 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.031, 0.083, 1.09 |
No. of reflections | 2012 |
No. of parameters | 91 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.30, −0.32 |
Computer programs: CrysAlis CCD (Oxford Diffraction, 2008), CrysAlis RED (Oxford Diffraction, 2008), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997) and Mercury (Macrae et al., 2006), WinGX (Farrugia, 1999).
Ni1—S2 | 2.2253 (6) | P1—S1 | 1.9876 (8) |
Ni1—S1 | 2.2254 (6) | P1—S2 | 1.9890 (8) |
S2—Ni1—S1 | 88.41 (2) | P1—S1—Ni1 | 84.50 (3) |
S1—P1—S2 | 102.58 (3) | P1—S2—Ni1 | 84.47 (3) |
Acknowledgements
AM-K acknowledges financial support provided by the Foundation for Polish Science (FNP).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
We are interested in metal complexes with sulfur rich kernel (Kropidłowska, Chojnacki, et al., 2008). Recently, we turned our attention to dithiophosphates and among others to the nickel(II) complexes with widely used diethyldithiophosphate ligand (DEDTP). We prepared the title Ni(DEDTP)2 complex and redetermined its structure. The nickel atom of Ni(DEDTP)2 molecule (Fig. 1) occupies a crystallographic inversion centre and shows a square planar geometry, which was also observed previously by Fernando & Green (Fernando & Green, 1967; NIETHP01) and McConnell & Kastalsky (McConnell & Kastalsky, 1967; NIETHP), who used multiple film technique data for the structure determination. For NIETHP01 (R = 15.7%) the average distances and angles within four-membered NiS2P chelate ring were given as Ni—S 2.21 (1) Å, P—S 1.97 (2) Å, S1—Ni—S2 88°, and S1—P—S2 103°. More precise values were reported for NIETHP (R = 11.5%) with the following distances and angles within chelate NiS2P ring: Ni—S1 2.230 (4) Å, Ni—S2 2.236 (4) Å, S1—P 1.986 (6) Å, S2—P 1.993 (5), S1—Ni—S2 88.5 (1)° and S1—P—S2 103.1 (2)°.
These may be compared to the present data - respective values are given in Table 2. Note almost identical bond lengths for the pairs of Ni–S and S–P bonds. The redetermination was done at room temperature and the structure was refined with a crystallographic reliability of R=3.06%. Although the overal picture did not change significantly, the precision of the present data is much higher. Lighter atoms (C, O) are well fixed, standard uncertainty values are approximately seven times lower than those of reported NIETHP and NIETHP01 structures and all H-atom positions are calculated.
In general, Ni–S bond lengths in several nickel(II) dialkyldithiophosphates, [Ni(S2P{OR}2)2] are quite similar. Those with R = Me (2.219 (2) and 2.225 (2) Å) (Kastalsky & McConnell, 1969, DMTPON), Pr (2.2255 (6) - 2.2344 (5) Å) (Ivanov et al., 2004, IBAQAE), iPr (2.216 (1) and 2.227 (1) Å) (Tkachev & Atovmyan, 1976, IPDTPN, Hoskins & Tiekink, 1985, IPDTPN01) and iBu (2.218 (1) - 2.231 (1) Å) (Ivanov et al., 2004, IBAQEI) are within 2.218 - 2.235 Å range. Also S–P bond lengths change only slightly and all are within 1.98 - 2.00 Å. Crystals of Ni(DEDTP)2 consist of discrete units of the complex (Fig. 2) and besides short intermolecular C3—H3B ··· H3B—C3 contact between the symmetry related molecules (H···H distance equals 2.33 Å, see Fig. 3) there are no other interactions. Although the above mentioned contact is comparable with the sum of two hydrogen atoms van der Waals radii (2.4 Å) there is no reason to consider it as a weak hydrogen bond (Steiner & Desiraju, 1998). None of the aforementioned nickel(II) dialkyldithiophosphates show such C–H···H–C nonbonding interactions although for di(iso-butyl)dithiophosphate (Ivanov et al., 2004) the existence of weak C–H···S hydrogen bonds may be envisaged.