organic compounds
4-Cyclobutylamino-3-nitrobenzoic acid
aSchool of Pharmaceutical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and cX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
The 11H12N2O4, contains two crystallographically independent molecules with similar geometries. Both molecules contain an intramolecular N—H⋯O hydrogen bond. The dihedral angles between the benzene ring and the mean plane of the cyclobutane ring are 38.29 (7) and 57.04 (8)° in the two molecules, and the nitro group is twisted slightly away from the plane of the benzene ring [dihedral angles = 9.15 (12) and 9.55 (12)° in the two molecules]. In the crystal, the independent molecules are linked into dimers by O—H⋯O hydrogen bonds between their carboxyl groups, and C—H⋯O and C—H⋯π interactions are formed between dimers.
of the title compound, CRelated literature
For the biological activity of benzimidazole derivatives, see: Wright (1951); Singh et al. (2009). For details of the synthesis, see: Narendra Babu et al. (2009a,b); Ishida et al. (2006).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536809021412/bi2372sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809021412/bi2372Isup2.hkl
The title compound was obtained by refluxing ethyl 4-(cyclobutylamino)-3-nitro-benzoate (0.2 g, 0.0007 mol) and KOH (0.08 g, 0.0015 mol) in aqueous ethanol (5 ml) for 3 h. After completion of the reaction, ethanol was distilled off and the reaction mixture was diluted with water (5 ml). The aqueous layer was washed with dichloromethane (2 × 5 ml) and acidified with concentrated hydrochloric acid to afford a yellow solid. Yellow crystals suitable for X-ray analysis were obtained after recrystallization of the crude product with hot ethyl acetate.
H atoms bound to N and O atoms were located from difference Fourier maps. Atoms H1NA and H1NB were refined freely, while atoms H1OA and H1OB were refined as riding on the parent O atom with Uiso(H) = 1.5 Ueq(O). The remaining H atoms were positioned geometrically and refined using a riding model, with C—H = 0.93–0.98 Å and Uiso(H) = 1.2 or 1.5 Ueq(C).
Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. Molecular structure of the title compound, showing 50% probability displacement ellipsoids for non-H atoms. The dashed lines indicate hydrogen bonds. | |
Fig. 2. Packing diagram viewed along the a axis. Intermolecular interactions are shown as dashed lines. |
C11H12N2O4 | Z = 4 |
Mr = 236.23 | F(000) = 496 |
Triclinic, P1 | Dx = 1.467 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.8555 (2) Å | Cell parameters from 9970 reflections |
b = 10.5308 (2) Å | θ = 2.1–34.1° |
c = 10.9110 (2) Å | µ = 0.11 mm−1 |
α = 74.860 (1)° | T = 110 K |
β = 78.265 (1)° | Block, yellow |
γ = 84.826 (1)° | 0.37 × 0.23 × 0.21 mm |
V = 1069.44 (4) Å3 |
Bruker SMART APEXII CCD diffractometer | 7670 independent reflections |
Radiation source: fine-focus sealed tube | 6094 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.027 |
ϕ and ω scans | θmax = 32.5°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −13→14 |
Tmin = 0.960, Tmax = 0.976 | k = −15→15 |
29344 measured reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.139 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.079P)2 + 0.2648P] where P = (Fo2 + 2Fc2)/3 |
7670 reflections | (Δ/σ)max < 0.001 |
315 parameters | Δρmax = 0.68 e Å−3 |
0 restraints | Δρmin = −0.25 e Å−3 |
C11H12N2O4 | γ = 84.826 (1)° |
Mr = 236.23 | V = 1069.44 (4) Å3 |
Triclinic, P1 | Z = 4 |
a = 9.8555 (2) Å | Mo Kα radiation |
b = 10.5308 (2) Å | µ = 0.11 mm−1 |
c = 10.9110 (2) Å | T = 110 K |
α = 74.860 (1)° | 0.37 × 0.23 × 0.21 mm |
β = 78.265 (1)° |
Bruker SMART APEXII CCD diffractometer | 7670 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 6094 reflections with I > 2σ(I) |
Tmin = 0.960, Tmax = 0.976 | Rint = 0.027 |
29344 measured reflections |
R[F2 > 2σ(F2)] = 0.048 | 0 restraints |
wR(F2) = 0.139 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.68 e Å−3 |
7670 reflections | Δρmin = −0.25 e Å−3 |
315 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat operating at 110.0 (1) K. Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst. 19, 105–107. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1A | 0.41436 (8) | 0.68803 (8) | −0.08160 (8) | 0.02153 (17) | |
O2A | 0.24499 (9) | 0.80673 (8) | 0.01400 (9) | 0.02327 (17) | |
H1OA | 0.2969 | 0.8671 | −0.0208 | 0.035* | |
O3A | −0.16874 (10) | 0.63616 (9) | 0.25760 (10) | 0.0315 (2) | |
O4A | −0.22880 (9) | 0.43744 (8) | 0.28295 (10) | 0.02693 (19) | |
N1A | −0.14187 (9) | 0.52458 (9) | 0.24261 (9) | 0.01836 (18) | |
N2A | −0.04041 (10) | 0.25875 (8) | 0.22307 (9) | 0.01699 (17) | |
C1A | −0.00540 (10) | 0.49386 (10) | 0.17520 (10) | 0.01442 (17) | |
C2A | 0.07959 (10) | 0.59982 (10) | 0.11780 (10) | 0.01488 (18) | |
H2AA | 0.0469 | 0.6840 | 0.1240 | 0.018* | |
C3A | 0.21236 (10) | 0.58164 (10) | 0.05150 (10) | 0.01456 (17) | |
C4A | 0.26136 (10) | 0.45284 (10) | 0.04592 (10) | 0.01638 (18) | |
H4AA | 0.3507 | 0.4394 | 0.0023 | 0.020* | |
C5A | 0.17907 (11) | 0.34694 (10) | 0.10395 (10) | 0.01650 (18) | |
H5AA | 0.2147 | 0.2629 | 0.1001 | 0.020* | |
C6A | 0.04005 (10) | 0.36263 (9) | 0.17013 (9) | 0.01448 (17) | |
C7A | 0.00443 (12) | 0.12158 (10) | 0.24008 (10) | 0.01755 (19) | |
H7AA | 0.0805 | 0.1007 | 0.2885 | 0.021* | |
C8A | 0.03497 (12) | 0.06059 (10) | 0.12218 (11) | 0.0202 (2) | |
H8AA | −0.0060 | 0.1105 | 0.0496 | 0.024* | |
H8AB | 0.1325 | 0.0396 | 0.0947 | 0.024* | |
C9A | −0.04894 (13) | −0.05907 (11) | 0.20696 (11) | 0.0229 (2) | |
H9AA | −0.1156 | −0.0859 | 0.1652 | 0.027* | |
H9AB | 0.0080 | −0.1337 | 0.2436 | 0.027* | |
C10A | −0.11338 (13) | 0.02595 (11) | 0.30201 (11) | 0.0235 (2) | |
H10A | −0.2046 | 0.0642 | 0.2902 | 0.028* | |
H10B | −0.1131 | −0.0179 | 0.3920 | 0.028* | |
C11A | 0.29658 (10) | 0.69811 (10) | −0.00959 (10) | 0.01597 (18) | |
O1B | 0.37447 (9) | 0.02069 (9) | 0.91518 (9) | 0.02540 (18) | |
O2B | 0.55207 (10) | −0.08564 (8) | 0.81460 (9) | 0.02504 (18) | |
H1OB | 0.5107 | −0.1537 | 0.8547 | 0.038* | |
O3B | 0.91441 (9) | 0.17243 (8) | 0.51738 (8) | 0.02423 (18) | |
O4B | 0.93948 (9) | 0.37738 (8) | 0.50719 (9) | 0.02599 (19) | |
N1B | 0.87317 (9) | 0.27498 (9) | 0.54966 (9) | 0.01787 (17) | |
N2B | 0.73342 (10) | 0.51524 (9) | 0.61428 (9) | 0.01799 (17) | |
C1B | 0.74352 (10) | 0.27632 (10) | 0.63934 (10) | 0.01530 (18) | |
C2B | 0.68286 (11) | 0.15493 (10) | 0.69549 (10) | 0.01604 (18) | |
H2BA | 0.7277 | 0.0790 | 0.6762 | 0.019* | |
C3B | 0.55681 (11) | 0.14668 (10) | 0.77957 (10) | 0.01613 (18) | |
C4B | 0.48894 (11) | 0.26379 (10) | 0.80444 (10) | 0.01760 (19) | |
H4BA | 0.4031 | 0.2595 | 0.8595 | 0.021* | |
C5B | 0.54711 (11) | 0.38380 (10) | 0.74909 (10) | 0.01740 (19) | |
H5BA | 0.4991 | 0.4591 | 0.7669 | 0.021* | |
C6B | 0.67903 (10) | 0.39638 (10) | 0.66502 (10) | 0.01536 (18) | |
C7B | 0.65788 (11) | 0.63794 (10) | 0.62404 (10) | 0.01690 (18) | |
H7BA | 0.6232 | 0.6385 | 0.7147 | 0.020* | |
C8B | 0.54323 (12) | 0.68736 (12) | 0.54265 (12) | 0.0239 (2) | |
H8BA | 0.5534 | 0.6522 | 0.4674 | 0.029* | |
H8BB | 0.4497 | 0.6780 | 0.5926 | 0.029* | |
C9B | 0.59819 (13) | 0.82720 (11) | 0.51283 (13) | 0.0249 (2) | |
H9BA | 0.6070 | 0.8749 | 0.4228 | 0.030* | |
H9BB | 0.5483 | 0.8803 | 0.5693 | 0.030* | |
C10B | 0.73574 (12) | 0.76364 (10) | 0.55077 (11) | 0.0208 (2) | |
H10C | 0.8066 | 0.7525 | 0.4780 | 0.025* | |
H10D | 0.7719 | 0.8058 | 0.6059 | 0.025* | |
C11B | 0.49108 (11) | 0.01977 (10) | 0.83986 (10) | 0.01689 (19) | |
H1NA | −0.124 (2) | 0.2777 (18) | 0.2638 (18) | 0.038 (5)* | |
H1NB | 0.805 (2) | 0.5208 (18) | 0.5636 (18) | 0.035 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1A | 0.0161 (3) | 0.0208 (4) | 0.0240 (4) | −0.0040 (3) | 0.0020 (3) | −0.0025 (3) |
O2A | 0.0194 (4) | 0.0128 (3) | 0.0356 (5) | −0.0029 (3) | −0.0012 (3) | −0.0049 (3) |
O3A | 0.0237 (4) | 0.0165 (4) | 0.0500 (6) | −0.0019 (3) | 0.0087 (4) | −0.0125 (4) |
O4A | 0.0160 (4) | 0.0180 (4) | 0.0415 (5) | −0.0058 (3) | 0.0052 (3) | −0.0044 (3) |
N1A | 0.0148 (4) | 0.0143 (4) | 0.0234 (4) | −0.0015 (3) | 0.0000 (3) | −0.0027 (3) |
N2A | 0.0180 (4) | 0.0103 (4) | 0.0205 (4) | −0.0027 (3) | −0.0002 (3) | −0.0020 (3) |
C1A | 0.0128 (4) | 0.0122 (4) | 0.0169 (4) | −0.0012 (3) | −0.0014 (3) | −0.0021 (3) |
C2A | 0.0150 (4) | 0.0114 (4) | 0.0173 (4) | −0.0014 (3) | −0.0031 (3) | −0.0015 (3) |
C3A | 0.0140 (4) | 0.0120 (4) | 0.0167 (4) | −0.0026 (3) | −0.0029 (3) | −0.0011 (3) |
C4A | 0.0141 (4) | 0.0151 (4) | 0.0194 (4) | −0.0003 (3) | −0.0025 (3) | −0.0039 (3) |
C5A | 0.0166 (4) | 0.0123 (4) | 0.0200 (4) | 0.0002 (3) | −0.0033 (3) | −0.0032 (3) |
C6A | 0.0164 (4) | 0.0116 (4) | 0.0149 (4) | −0.0020 (3) | −0.0036 (3) | −0.0014 (3) |
C7A | 0.0228 (5) | 0.0102 (4) | 0.0193 (4) | −0.0021 (3) | −0.0047 (4) | −0.0019 (3) |
C8A | 0.0239 (5) | 0.0149 (4) | 0.0215 (5) | −0.0003 (4) | −0.0036 (4) | −0.0043 (4) |
C9A | 0.0327 (6) | 0.0137 (4) | 0.0242 (5) | −0.0039 (4) | −0.0082 (4) | −0.0049 (4) |
C10A | 0.0311 (6) | 0.0140 (4) | 0.0233 (5) | −0.0083 (4) | 0.0007 (4) | −0.0030 (4) |
C11A | 0.0149 (4) | 0.0140 (4) | 0.0183 (4) | −0.0026 (3) | −0.0036 (3) | −0.0018 (3) |
O1B | 0.0196 (4) | 0.0211 (4) | 0.0306 (4) | −0.0075 (3) | 0.0025 (3) | −0.0011 (3) |
O2B | 0.0304 (4) | 0.0145 (4) | 0.0284 (4) | −0.0049 (3) | −0.0012 (3) | −0.0040 (3) |
O3B | 0.0265 (4) | 0.0204 (4) | 0.0240 (4) | −0.0019 (3) | 0.0033 (3) | −0.0082 (3) |
O4B | 0.0185 (4) | 0.0176 (4) | 0.0358 (5) | −0.0053 (3) | 0.0044 (3) | −0.0016 (3) |
N1B | 0.0166 (4) | 0.0166 (4) | 0.0183 (4) | −0.0021 (3) | −0.0013 (3) | −0.0017 (3) |
N2B | 0.0160 (4) | 0.0133 (4) | 0.0221 (4) | −0.0024 (3) | −0.0012 (3) | −0.0011 (3) |
C1B | 0.0137 (4) | 0.0145 (4) | 0.0164 (4) | −0.0030 (3) | −0.0017 (3) | −0.0016 (3) |
C2B | 0.0170 (4) | 0.0133 (4) | 0.0174 (4) | −0.0025 (3) | −0.0031 (3) | −0.0025 (3) |
C3B | 0.0164 (4) | 0.0134 (4) | 0.0177 (4) | −0.0040 (3) | −0.0029 (3) | −0.0014 (3) |
C4B | 0.0154 (4) | 0.0164 (4) | 0.0191 (4) | −0.0025 (3) | −0.0011 (3) | −0.0022 (4) |
C5B | 0.0157 (4) | 0.0146 (4) | 0.0200 (5) | −0.0016 (3) | −0.0015 (3) | −0.0022 (3) |
C6B | 0.0153 (4) | 0.0134 (4) | 0.0169 (4) | −0.0020 (3) | −0.0043 (3) | −0.0015 (3) |
C7B | 0.0185 (4) | 0.0129 (4) | 0.0186 (4) | −0.0014 (3) | −0.0043 (4) | −0.0017 (3) |
C8B | 0.0188 (5) | 0.0209 (5) | 0.0304 (6) | −0.0031 (4) | −0.0089 (4) | 0.0008 (4) |
C9B | 0.0241 (5) | 0.0166 (5) | 0.0308 (6) | −0.0003 (4) | −0.0080 (4) | 0.0018 (4) |
C10B | 0.0221 (5) | 0.0131 (4) | 0.0270 (5) | −0.0038 (4) | −0.0080 (4) | −0.0011 (4) |
C11B | 0.0168 (4) | 0.0145 (4) | 0.0186 (4) | −0.0039 (3) | −0.0028 (3) | −0.0022 (3) |
O1A—C11A | 1.2752 (13) | O1B—C11B | 1.2705 (13) |
O2A—C11A | 1.2763 (12) | O2B—C11B | 1.2812 (13) |
O2A—H1OA | 0.815 | O2B—H1OB | 0.829 |
O3A—N1A | 1.2264 (12) | O3B—N1B | 1.2316 (12) |
O4A—N1A | 1.2439 (12) | O4B—N1B | 1.2440 (12) |
N1A—C1A | 1.4484 (13) | N1B—C1B | 1.4442 (13) |
N2A—C6A | 1.3413 (13) | N2B—C6B | 1.3412 (13) |
N2A—C7A | 1.4472 (13) | N2B—C7B | 1.4497 (13) |
N2A—H1NA | 0.888 (19) | N2B—H1NB | 0.802 (19) |
C1A—C2A | 1.3889 (14) | C1B—C2B | 1.3952 (14) |
C1A—C6A | 1.4254 (13) | C1B—C6B | 1.4313 (14) |
C2A—C3A | 1.3836 (14) | C2B—C3B | 1.3808 (14) |
C2A—H2AA | 0.930 | C2B—H2BA | 0.930 |
C3A—C4A | 1.4105 (13) | C3B—C4B | 1.4122 (14) |
C3A—C11A | 1.4728 (14) | C3B—C11B | 1.4704 (14) |
C4A—C5A | 1.3740 (14) | C4B—C5B | 1.3718 (14) |
C4A—H4AA | 0.930 | C4B—H4BA | 0.930 |
C5A—C6A | 1.4300 (14) | C5B—C6B | 1.4254 (14) |
C5A—H5AA | 0.930 | C5B—H5BA | 0.930 |
C7A—C10A | 1.5347 (15) | C7B—C10B | 1.5365 (15) |
C7A—C8A | 1.5483 (15) | C7B—C8B | 1.5482 (15) |
C7A—H7AA | 0.980 | C7B—H7BA | 0.980 |
C8A—C9A | 1.5477 (16) | C8B—C9B | 1.5458 (17) |
C8A—H8AA | 0.970 | C8B—H8BA | 0.970 |
C8A—H8AB | 0.970 | C8B—H8BB | 0.970 |
C9A—C10A | 1.5476 (16) | C9B—C10B | 1.5418 (16) |
C9A—H9AA | 0.970 | C9B—H9BA | 0.970 |
C9A—H9AB | 0.970 | C9B—H9BB | 0.970 |
C10A—H10A | 0.970 | C10B—H10C | 0.970 |
C10A—H10B | 0.970 | C10B—H10D | 0.970 |
C11A—O2A—H1OA | 111.9 | C11B—O2B—H1OB | 114.1 |
O3A—N1A—O4A | 121.83 (9) | O3B—N1B—O4B | 122.07 (9) |
O3A—N1A—C1A | 119.01 (9) | O3B—N1B—C1B | 118.88 (9) |
O4A—N1A—C1A | 119.16 (9) | O4B—N1B—C1B | 119.05 (9) |
C6A—N2A—C7A | 126.24 (9) | C6B—N2B—C7B | 123.78 (9) |
C6A—N2A—H1NA | 114.6 (12) | C6B—N2B—H1NB | 118.5 (13) |
C7A—N2A—H1NA | 118.1 (12) | C7B—N2B—H1NB | 116.5 (13) |
C2A—C1A—C6A | 121.97 (9) | C2B—C1B—C6B | 122.19 (9) |
C2A—C1A—N1A | 115.91 (9) | C2B—C1B—N1B | 116.19 (9) |
C6A—C1A—N1A | 122.12 (9) | C6B—C1B—N1B | 121.58 (9) |
C3A—C2A—C1A | 120.77 (9) | C3B—C2B—C1B | 120.48 (9) |
C3A—C2A—H2AA | 119.6 | C3B—C2B—H2BA | 119.8 |
C1A—C2A—H2AA | 119.6 | C1B—C2B—H2BA | 119.8 |
C2A—C3A—C4A | 118.77 (9) | C2B—C3B—C4B | 118.68 (9) |
C2A—C3A—C11A | 118.30 (9) | C2B—C3B—C11B | 121.37 (9) |
C4A—C3A—C11A | 122.93 (9) | C4B—C3B—C11B | 119.92 (9) |
C5A—C4A—C3A | 121.02 (9) | C5B—C4B—C3B | 121.34 (10) |
C5A—C4A—H4AA | 119.5 | C5B—C4B—H4BA | 119.3 |
C3A—C4A—H4AA | 119.5 | C3B—C4B—H4BA | 119.3 |
C4A—C5A—C6A | 121.66 (9) | C4B—C5B—C6B | 121.84 (9) |
C4A—C5A—H5AA | 119.2 | C4B—C5B—H5BA | 119.1 |
C6A—C5A—H5AA | 119.2 | C6B—C5B—H5BA | 119.1 |
N2A—C6A—C1A | 123.24 (9) | N2B—C6B—C5B | 120.09 (9) |
N2A—C6A—C5A | 120.98 (9) | N2B—C6B—C1B | 124.48 (9) |
C1A—C6A—C5A | 115.78 (9) | C5B—C6B—C1B | 115.42 (9) |
N2A—C7A—C10A | 113.66 (9) | N2B—C7B—C10B | 115.50 (9) |
N2A—C7A—C8A | 119.61 (9) | N2B—C7B—C8B | 118.69 (9) |
C10A—C7A—C8A | 89.08 (8) | C10B—C7B—C8B | 88.50 (8) |
N2A—C7A—H7AA | 110.9 | N2B—C7B—H7BA | 110.8 |
C10A—C7A—H7AA | 110.9 | C10B—C7B—H7BA | 110.8 |
C8A—C7A—H7AA | 110.9 | C8B—C7B—H7BA | 110.8 |
C9A—C8A—C7A | 88.22 (8) | C9B—C8B—C7B | 87.84 (8) |
C9A—C8A—H8AA | 113.9 | C9B—C8B—H8BA | 114.0 |
C7A—C8A—H8AA | 113.9 | C7B—C8B—H8BA | 114.0 |
C9A—C8A—H8AB | 113.9 | C9B—C8B—H8BB | 114.0 |
C7A—C8A—H8AB | 113.9 | C7B—C8B—H8BB | 114.0 |
H8AA—C8A—H8AB | 111.2 | H8BA—C8B—H8BB | 111.2 |
C10A—C9A—C8A | 88.63 (8) | C10B—C9B—C8B | 88.40 (8) |
C10A—C9A—H9AA | 113.9 | C10B—C9B—H9BA | 113.9 |
C8A—C9A—H9AA | 113.9 | C8B—C9B—H9BA | 113.9 |
C10A—C9A—H9AB | 113.9 | C10B—C9B—H9BB | 113.9 |
C8A—C9A—H9AB | 113.9 | C8B—C9B—H9BB | 113.9 |
H9AA—C9A—H9AB | 111.1 | H9BA—C9B—H9BB | 111.1 |
C7A—C10A—C9A | 88.71 (9) | C7B—C10B—C9B | 88.40 (8) |
C7A—C10A—H10A | 113.9 | C7B—C10B—H10C | 113.9 |
C9A—C10A—H10A | 113.9 | C9B—C10B—H10C | 113.9 |
C7A—C10A—H10B | 113.9 | C7B—C10B—H10D | 113.9 |
C9A—C10A—H10B | 113.9 | C9B—C10B—H10D | 113.9 |
H10A—C10A—H10B | 111.1 | H10C—C10B—H10D | 111.1 |
O1A—C11A—O2A | 123.11 (10) | O1B—C11B—O2B | 122.99 (10) |
O1A—C11A—C3A | 120.54 (9) | O1B—C11B—C3B | 117.51 (9) |
O2A—C11A—C3A | 116.35 (9) | O2B—C11B—C3B | 119.49 (9) |
O3A—N1A—C1A—C2A | −7.97 (15) | O3B—N1B—C1B—C2B | 7.80 (14) |
O4A—N1A—C1A—C2A | 171.59 (10) | O4B—N1B—C1B—C2B | −172.39 (10) |
O3A—N1A—C1A—C6A | 170.85 (10) | O3B—N1B—C1B—C6B | −169.99 (10) |
O4A—N1A—C1A—C6A | −9.59 (15) | O4B—N1B—C1B—C6B | 9.82 (15) |
C6A—C1A—C2A—C3A | 0.82 (16) | C6B—C1B—C2B—C3B | −0.32 (16) |
N1A—C1A—C2A—C3A | 179.65 (9) | N1B—C1B—C2B—C3B | −178.10 (9) |
C1A—C2A—C3A—C4A | −1.57 (15) | C1B—C2B—C3B—C4B | 1.83 (15) |
C1A—C2A—C3A—C11A | 178.78 (9) | C1B—C2B—C3B—C11B | −179.98 (10) |
C2A—C3A—C4A—C5A | 0.59 (15) | C2B—C3B—C4B—C5B | −1.38 (16) |
C11A—C3A—C4A—C5A | −179.77 (10) | C11B—C3B—C4B—C5B | −179.61 (10) |
C3A—C4A—C5A—C6A | 1.17 (16) | C3B—C4B—C5B—C6B | −0.62 (16) |
C7A—N2A—C6A—C1A | −169.40 (10) | C7B—N2B—C6B—C5B | −9.26 (16) |
C7A—N2A—C6A—C5A | 10.71 (16) | C7B—N2B—C6B—C1B | 169.59 (10) |
C2A—C1A—C6A—N2A | −179.01 (10) | C4B—C5B—C6B—N2B | −179.01 (10) |
N1A—C1A—C6A—N2A | 2.23 (16) | C4B—C5B—C6B—C1B | 2.04 (15) |
C2A—C1A—C6A—C5A | 0.88 (15) | C2B—C1B—C6B—N2B | 179.51 (10) |
N1A—C1A—C6A—C5A | −177.88 (9) | N1B—C1B—C6B—N2B | −2.83 (16) |
C4A—C5A—C6A—N2A | 178.03 (10) | C2B—C1B—C6B—C5B | −1.59 (15) |
C4A—C5A—C6A—C1A | −1.86 (15) | N1B—C1B—C6B—C5B | 176.07 (9) |
C6A—N2A—C7A—C10A | −179.08 (10) | C6B—N2B—C7B—C10B | −175.71 (10) |
C6A—N2A—C7A—C8A | −75.85 (14) | C6B—N2B—C7B—C8B | −72.54 (14) |
N2A—C7A—C8A—C9A | −134.34 (10) | N2B—C7B—C8B—C9B | −138.08 (10) |
C10A—C7A—C8A—C9A | −17.43 (9) | C10B—C7B—C8B—C9B | −19.62 (9) |
C7A—C8A—C9A—C10A | 17.28 (9) | C7B—C8B—C9B—C10B | 19.55 (9) |
N2A—C7A—C10A—C9A | 139.60 (9) | N2B—C7B—C10B—C9B | 140.96 (10) |
C8A—C7A—C10A—C9A | 17.42 (8) | C8B—C7B—C10B—C9B | 19.66 (9) |
C8A—C9A—C10A—C7A | −17.43 (9) | C8B—C9B—C10B—C7B | −19.70 (9) |
C2A—C3A—C11A—O1A | −173.48 (10) | C2B—C3B—C11B—O1B | −179.36 (10) |
C4A—C3A—C11A—O1A | 6.87 (16) | C4B—C3B—C11B—O1B | −1.19 (15) |
C2A—C3A—C11A—O2A | 6.58 (14) | C2B—C3B—C11B—O2B | 0.37 (16) |
C4A—C3A—C11A—O2A | −173.06 (10) | C4B—C3B—C11B—O2B | 178.54 (10) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2A—H1OA···O1Bi | 0.81 | 1.76 | 2.5608 (13) | 166 |
O2B—H1OB···O1Aii | 0.83 | 1.89 | 2.7118 (12) | 170 |
N2A—H1NA···O4A | 0.89 (2) | 1.93 (2) | 2.6332 (13) | 135.3 (17) |
N2B—H1NB···O4B | 0.80 (2) | 2.05 (2) | 2.6432 (13) | 130.7 (18) |
C8B—H8BB···O4Aiii | 0.97 | 2.54 | 3.4613 (16) | 158 |
C8B—H8BA···Cg1iv | 0.97 | 2.83 | 3.4744 (13) | 124 |
Symmetry codes: (i) x, y+1, z−1; (ii) x, y−1, z+1; (iii) −x, −y+1, −z+1; (iv) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C11H12N2O4 |
Mr | 236.23 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 110 |
a, b, c (Å) | 9.8555 (2), 10.5308 (2), 10.9110 (2) |
α, β, γ (°) | 74.860 (1), 78.265 (1), 84.826 (1) |
V (Å3) | 1069.44 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.37 × 0.23 × 0.21 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.960, 0.976 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 29344, 7670, 6094 |
Rint | 0.027 |
(sin θ/λ)max (Å−1) | 0.756 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.139, 1.05 |
No. of reflections | 7670 |
No. of parameters | 315 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.68, −0.25 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O2A—H1OA···O1Bi | 0.81 | 1.76 | 2.5608 (13) | 166 |
O2B—H1OB···O1Aii | 0.83 | 1.89 | 2.7118 (12) | 170 |
N2A—H1NA···O4A | 0.89 (2) | 1.93 (2) | 2.6332 (13) | 135.3 (17) |
N2B—H1NB···O4B | 0.80 (2) | 2.05 (2) | 2.6432 (13) | 130.7 (18) |
C8B—H8BB···O4Aiii | 0.97 | 2.54 | 3.4613 (16) | 158 |
C8B—H8BA···Cg1iv | 0.97 | 2.83 | 3.4744 (13) | 124 |
Symmetry codes: (i) x, y+1, z−1; (ii) x, y−1, z+1; (iii) −x, −y+1, −z+1; (iv) −x+1, −y+1, −z+1. |
Acknowledgements
SNNB, ASAR and HO are grateful to Universiti Sains Malaysia (USM) for funding the synthetic chemistry work under the University Research Grant (1001/PFARMASI/815026). SNNB acknowledges USM for a Postdoctoral Research Fellowship. HKF and CKQ thank USM for the Research University Golden Goose Grant (1001/PFIZIK/811012). CKQ thanks USM for a Research Fellowship.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Multi functionalized benzimidazole remains as an attractive scaffold to display essential binding moieties against many validated biological targets (Wright, 1951; Singh et al., 2009). This heterocycle is commonly accessed via nitro benzoic acid derivatives, which form a part of our current synthetic chemistry work (Narendra Babu et al., 2009a&b; Ishida et al., 2006). Recently, we have successfully synthesized the title compound, whose crystal structure is described here.
The asymmetric unit contains two crystallographically independent molecules (Fig. 1), A and B with similar geometries. An intramolecular N–H···O hydrogen bond is formed in both independent molecules. The dihedral angle formed by the C1A–C6A benzene ring and C7A–C10A cyclobutane is 38.29 (7)° and that between the C1B–C6B benzene ring and C7B–C10B cyclobutane is 57.04 (8)°. The nitro group in each molecule is slightly twisted away from the attached benzene ring as indicated by the torsion angle O3—N1—C1—C2, being 7.97 (15)° and 7.80 (14)° in molecules A and B, respectively.
The crystal packing (Fig. 2) is consolidated by intermolecular O—H···O and C—H···O hydrogen bonds. Molecules are linked by O—H···O hydrogen bonds between their carboxylate groups to form dimers. The crystal structure is further stabilized by C—H···π (Table 1) interactions involving the C1B–C6B benzene ring (centroid Cg1) and short O4B···O4B contacts (symmetry code: 2 - x, 1 - y, 1 - z) with distance = 2.8957 (12) Å which is shorter than the sum of van der Waals radii of the O atoms.