organic compounds
2,4-Bis(2-fluorophenyl)-3-azabicyclo[3.3.1]nonan-9-one
aDivision of Image Science and Information Engineering, Pukyong National University, Busan 608 739, Republic of Korea, and bDepartment of Chemistry, IIT Madras, Chennai, TamilNadu, India
*Correspondence e-mail: ytjeong@pknu.ac.kr
The title compound, C20H19F2NO, exists in a twin-chair conformation with an equatorial orientation of the two 2-fluorophenyl groups on both sides of the secondary amine group. The benzene rings are orientated at an angle of 25.68 (4)° with respect to one another and the F atoms point upwards (towards the carbonyl group). The crystal is stabilized by an intermolecular N—H⋯π interaction.
Related literature
3-Azabicyclononanes are present in numerous naturally occurring diterpenoid/norditerpenoid et al. (1996); Jeyaraman et al. (1981); For related structures, see: Parthiban et al. (2008a,b, 2009); Parthiban, Ramkumar, Kim et al. (2008); Parthiban, Ramkumar, Santan et al. (2008); Parthiban, Thirumurugan et al. (2008). For puckering parameters, see: Cremer & Pople (1975).
and display broad-spectrum biological activity, see: HardickExperimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell SAINT-Plus (Bruker, 2004); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536809022065/bq2146sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809022065/bq2146Isup2.hkl
A mixture of cyclohexanone (0.025 mol, 2.45 g) and ortho-fluorobenzaldehyde (0.05 mol, 6.21 g) was added to a warm solution of ammonium acetate (0.04 mol, 3.08 g) in 30 ml of absolute ethanol. The mixture was gently warmed with stirring till the yellow color was formed during the mixing of the reactants and then stirred at room temperature up to the formation of product. At the end, the crude azabicyclic ketone was separated by filtration and washed with 1:5 ethanol-ether mixture to remove the coloring impurities. Recrystallization of the compound from acetone gave X-ray diffraction quality crystals of 2,4-bis(2-fluorophenyl)-3-azabicyclo[3.3.1]nonan-9-one.
Nitrogen H atoms were located in a difference Fourier map and refined isotropically. Other hydrogen atoms were fixed geometrically and allowed to ride on the parent carbon atoms, with aromatic C—H =0.93 Å, aliphatic C—H = 0.98 Å and methylen C—H = 0.97 Å. The displacement parameters were set for phenyl, methylen and aliphatic H atoms at Uiso(H) = 1.2Ueq(C).
Data collection: APEX2 (Bruker, 2004); cell
SAINT-Plus (Bruker, 2004); data reduction: SAINT-Plus (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. The molecular structure of title compound, showing 30% probability displacement ellipsoids. | |
Fig. 2. The packing diagram of title compound showing N—H···π interaction |
C20H19F2NO | Z = 2 |
Mr = 327.36 | F(000) = 344 |
Triclinic, P1 | Dx = 1.327 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.4699 (3) Å | Cell parameters from 3420 reflections |
b = 10.6621 (4) Å | θ = 2.5–27.4° |
c = 10.7131 (4) Å | µ = 0.10 mm−1 |
α = 78.027 (2)° | T = 298 K |
β = 78.946 (2)° | Block, colourless |
γ = 87.201 (2)° | 0.42 × 0.38 × 0.12 mm |
V = 819.16 (5) Å3 |
Bruker APEXII CCD area-detector diffractometer | 3913 independent reflections |
Radiation source: fine-focus sealed tube | 2564 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.021 |
ϕ and ω scans | θmax = 28.5°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 1999) | h = −9→9 |
Tmin = 0.960, Tmax = 0.989 | k = −14→14 |
11219 measured reflections | l = −14→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.156 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.81 | w = 1/[σ2(Fo2) + (0.1P)2 + 0.2685P] where P = (Fo2 + 2Fc2)/3 |
3913 reflections | (Δ/σ)max < 0.001 |
221 parameters | Δρmax = 0.17 e Å−3 |
0 restraints | Δρmin = −0.20 e Å−3 |
C20H19F2NO | γ = 87.201 (2)° |
Mr = 327.36 | V = 819.16 (5) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.4699 (3) Å | Mo Kα radiation |
b = 10.6621 (4) Å | µ = 0.10 mm−1 |
c = 10.7131 (4) Å | T = 298 K |
α = 78.027 (2)° | 0.42 × 0.38 × 0.12 mm |
β = 78.946 (2)° |
Bruker APEXII CCD area-detector diffractometer | 3913 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1999) | 2564 reflections with I > 2σ(I) |
Tmin = 0.960, Tmax = 0.989 | Rint = 0.021 |
11219 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 0 restraints |
wR(F2) = 0.156 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.81 | Δρmax = 0.17 e Å−3 |
3913 reflections | Δρmin = −0.20 e Å−3 |
221 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.2684 (2) | 0.16060 (16) | 0.96799 (14) | 0.0419 (4) | |
H1 | 0.3499 | 0.0869 | 0.9585 | 0.050* | |
C2 | 0.3813 (2) | 0.27242 (18) | 0.98432 (15) | 0.0481 (4) | |
H2 | 0.4408 | 0.2431 | 1.0594 | 0.058* | |
C3 | 0.2715 (3) | 0.39499 (18) | 1.00204 (17) | 0.0546 (5) | |
H3A | 0.1694 | 0.3730 | 1.0734 | 0.066* | |
H3B | 0.3485 | 0.4532 | 1.0261 | 0.066* | |
C4 | 0.1990 (3) | 0.46430 (18) | 0.88289 (19) | 0.0595 (5) | |
H4A | 0.1607 | 0.5502 | 0.8941 | 0.071* | |
H4B | 0.0925 | 0.4196 | 0.8758 | 0.071* | |
C5 | 0.3381 (3) | 0.47348 (18) | 0.75758 (18) | 0.0591 (5) | |
H5A | 0.4243 | 0.5403 | 0.7526 | 0.071* | |
H5B | 0.2755 | 0.4987 | 0.6847 | 0.071* | |
C6 | 0.4445 (2) | 0.34774 (19) | 0.74473 (16) | 0.0506 (4) | |
H6 | 0.5433 | 0.3651 | 0.6689 | 0.061* | |
C7 | 0.3290 (2) | 0.23549 (16) | 0.73240 (14) | 0.0431 (4) | |
H7 | 0.4101 | 0.1616 | 0.7234 | 0.052* | |
C8 | 0.5261 (2) | 0.3061 (2) | 0.86420 (17) | 0.0540 (5) | |
C9 | 0.1194 (2) | 0.12155 (15) | 1.08599 (14) | 0.0397 (4) | |
C10 | −0.0618 (2) | 0.15942 (16) | 1.08968 (16) | 0.0463 (4) | |
H10 | −0.0971 | 0.2074 | 1.0153 | 0.056* | |
C11 | −0.1906 (3) | 0.12692 (19) | 1.20224 (18) | 0.0560 (5) | |
H11 | −0.3111 | 0.1535 | 1.2026 | 0.067* | |
C12 | −0.1423 (3) | 0.05585 (19) | 1.31351 (17) | 0.0595 (5) | |
H12 | −0.2294 | 0.0355 | 1.3891 | 0.071* | |
C13 | 0.0352 (3) | 0.01505 (18) | 1.31262 (16) | 0.0569 (5) | |
H13 | 0.0693 | −0.0347 | 1.3866 | 0.068* | |
C14 | 0.1613 (2) | 0.04921 (16) | 1.20018 (15) | 0.0470 (4) | |
C15 | 0.2390 (2) | 0.26888 (15) | 0.61458 (14) | 0.0415 (4) | |
C16 | 0.3352 (2) | 0.25928 (19) | 0.49306 (16) | 0.0524 (4) | |
C17 | 0.2607 (3) | 0.2853 (2) | 0.38267 (16) | 0.0638 (5) | |
H17 | 0.3306 | 0.2767 | 0.3031 | 0.077* | |
C18 | 0.0817 (3) | 0.3240 (2) | 0.39162 (17) | 0.0641 (5) | |
H18 | 0.0289 | 0.3419 | 0.3180 | 0.077* | |
C19 | −0.0185 (3) | 0.3362 (2) | 0.50969 (18) | 0.0586 (5) | |
H19 | −0.1396 | 0.3630 | 0.5158 | 0.070* | |
C20 | 0.0587 (2) | 0.30888 (17) | 0.62043 (15) | 0.0483 (4) | |
H20 | −0.0116 | 0.3176 | 0.6998 | 0.058* | |
F1 | 0.33764 (16) | 0.01112 (12) | 1.20093 (11) | 0.0726 (4) | |
F2 | 0.51212 (16) | 0.21980 (16) | 0.48284 (11) | 0.0853 (4) | |
N1 | 0.19010 (18) | 0.19950 (13) | 0.85064 (11) | 0.0397 (3) | |
O1 | 0.68765 (18) | 0.30314 (19) | 0.86537 (14) | 0.0831 (5) | |
H1A | 0.129 (3) | 0.1358 (19) | 0.8399 (17) | 0.050 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0392 (9) | 0.0502 (9) | 0.0351 (7) | 0.0105 (7) | −0.0090 (6) | −0.0071 (6) |
C2 | 0.0358 (9) | 0.0718 (12) | 0.0383 (8) | −0.0009 (8) | −0.0129 (7) | −0.0095 (7) |
C3 | 0.0525 (11) | 0.0631 (11) | 0.0508 (9) | −0.0147 (8) | −0.0022 (8) | −0.0209 (8) |
C4 | 0.0605 (12) | 0.0489 (10) | 0.0693 (12) | 0.0008 (8) | −0.0086 (9) | −0.0159 (9) |
C5 | 0.0642 (13) | 0.0551 (11) | 0.0563 (10) | −0.0146 (9) | −0.0138 (9) | −0.0020 (8) |
C6 | 0.0322 (9) | 0.0761 (12) | 0.0394 (8) | −0.0063 (8) | −0.0011 (6) | −0.0058 (8) |
C7 | 0.0383 (9) | 0.0550 (9) | 0.0346 (7) | 0.0099 (7) | −0.0049 (6) | −0.0096 (6) |
C8 | 0.0326 (9) | 0.0790 (13) | 0.0511 (9) | −0.0024 (8) | −0.0082 (7) | −0.0138 (9) |
C9 | 0.0453 (9) | 0.0394 (8) | 0.0346 (7) | 0.0037 (6) | −0.0101 (6) | −0.0068 (6) |
C10 | 0.0446 (10) | 0.0486 (9) | 0.0438 (8) | 0.0023 (7) | −0.0109 (7) | −0.0035 (7) |
C11 | 0.0452 (10) | 0.0608 (11) | 0.0579 (10) | −0.0033 (8) | −0.0012 (8) | −0.0098 (8) |
C12 | 0.0694 (14) | 0.0598 (11) | 0.0437 (9) | −0.0146 (10) | 0.0050 (8) | −0.0087 (8) |
C13 | 0.0797 (14) | 0.0511 (10) | 0.0377 (8) | −0.0041 (9) | −0.0130 (8) | −0.0011 (7) |
C14 | 0.0542 (11) | 0.0456 (9) | 0.0423 (8) | 0.0080 (7) | −0.0159 (7) | −0.0064 (7) |
C15 | 0.0440 (9) | 0.0463 (9) | 0.0330 (7) | −0.0007 (7) | −0.0048 (6) | −0.0073 (6) |
C16 | 0.0469 (10) | 0.0682 (12) | 0.0413 (8) | −0.0012 (8) | −0.0013 (7) | −0.0152 (8) |
C17 | 0.0727 (14) | 0.0846 (14) | 0.0337 (8) | −0.0122 (11) | −0.0027 (8) | −0.0149 (8) |
C18 | 0.0746 (14) | 0.0775 (14) | 0.0419 (9) | −0.0108 (11) | −0.0218 (9) | −0.0032 (9) |
C19 | 0.0521 (11) | 0.0728 (13) | 0.0504 (10) | 0.0027 (9) | −0.0182 (8) | −0.0036 (8) |
C20 | 0.0469 (10) | 0.0581 (10) | 0.0377 (8) | 0.0034 (8) | −0.0067 (7) | −0.0068 (7) |
F1 | 0.0669 (8) | 0.0863 (9) | 0.0600 (7) | 0.0256 (6) | −0.0257 (6) | 0.0019 (6) |
F2 | 0.0542 (7) | 0.1445 (13) | 0.0570 (7) | 0.0195 (7) | 0.0026 (5) | −0.0363 (7) |
N1 | 0.0402 (8) | 0.0478 (8) | 0.0312 (6) | −0.0022 (6) | −0.0083 (5) | −0.0062 (5) |
O1 | 0.0315 (8) | 0.1455 (16) | 0.0696 (9) | −0.0015 (8) | −0.0105 (6) | −0.0143 (9) |
C1—N1 | 1.4617 (19) | C9—C14 | 1.386 (2) |
C1—C9 | 1.516 (2) | C9—C10 | 1.389 (2) |
C1—C2 | 1.551 (3) | C10—C11 | 1.384 (2) |
C1—H1 | 0.9800 | C10—H10 | 0.9300 |
C2—C8 | 1.506 (2) | C11—C12 | 1.374 (3) |
C2—C3 | 1.535 (3) | C11—H11 | 0.9300 |
C2—H2 | 0.9800 | C12—C13 | 1.374 (3) |
C3—C4 | 1.518 (3) | C12—H12 | 0.9300 |
C3—H3A | 0.9700 | C13—C14 | 1.374 (2) |
C3—H3B | 0.9700 | C13—H13 | 0.9300 |
C4—C5 | 1.520 (3) | C14—F1 | 1.361 (2) |
C4—H4A | 0.9700 | C15—C16 | 1.382 (2) |
C4—H4B | 0.9700 | C15—C20 | 1.386 (2) |
C5—C6 | 1.542 (3) | C16—F2 | 1.358 (2) |
C5—H5A | 0.9700 | C16—C17 | 1.373 (3) |
C5—H5B | 0.9700 | C17—C18 | 1.371 (3) |
C6—C8 | 1.498 (2) | C17—H17 | 0.9300 |
C6—C7 | 1.550 (3) | C18—C19 | 1.368 (3) |
C6—H6 | 0.9800 | C18—H18 | 0.9300 |
C7—N1 | 1.4703 (19) | C19—C20 | 1.388 (2) |
C7—C15 | 1.513 (2) | C19—H19 | 0.9300 |
C7—H7 | 0.9800 | C20—H20 | 0.9300 |
C8—O1 | 1.208 (2) | N1—H1A | 0.88 (2) |
N1—C1—C9 | 110.56 (13) | O1—C8—C6 | 124.57 (16) |
N1—C1—C2 | 109.45 (13) | O1—C8—C2 | 123.79 (16) |
C9—C1—C2 | 110.71 (13) | C6—C8—C2 | 111.61 (14) |
N1—C1—H1 | 108.7 | C14—C9—C10 | 116.13 (14) |
C9—C1—H1 | 108.7 | C14—C9—C1 | 120.38 (14) |
C2—C1—H1 | 108.7 | C10—C9—C1 | 123.42 (13) |
C8—C2—C3 | 107.64 (15) | C11—C10—C9 | 121.07 (15) |
C8—C2—C1 | 107.86 (14) | C11—C10—H10 | 119.5 |
C3—C2—C1 | 114.94 (14) | C9—C10—H10 | 119.5 |
C8—C2—H2 | 108.8 | C12—C11—C10 | 120.71 (18) |
C3—C2—H2 | 108.8 | C12—C11—H11 | 119.6 |
C1—C2—H2 | 108.8 | C10—C11—H11 | 119.6 |
C4—C3—C2 | 114.55 (14) | C13—C12—C11 | 119.71 (16) |
C4—C3—H3A | 108.6 | C13—C12—H12 | 120.1 |
C2—C3—H3A | 108.6 | C11—C12—H12 | 120.1 |
C4—C3—H3B | 108.6 | C14—C13—C12 | 118.66 (16) |
C2—C3—H3B | 108.6 | C14—C13—H13 | 120.7 |
H3A—C3—H3B | 107.6 | C12—C13—H13 | 120.7 |
C3—C4—C5 | 113.26 (16) | F1—C14—C13 | 118.33 (15) |
C3—C4—H4A | 108.9 | F1—C14—C9 | 117.96 (15) |
C5—C4—H4A | 108.9 | C13—C14—C9 | 123.70 (16) |
C3—C4—H4B | 108.9 | C16—C15—C20 | 116.11 (15) |
C5—C4—H4B | 108.9 | C16—C15—C7 | 120.57 (15) |
H4A—C4—H4B | 107.7 | C20—C15—C7 | 123.31 (13) |
C4—C5—C6 | 114.00 (15) | F2—C16—C17 | 118.29 (15) |
C4—C5—H5A | 108.8 | F2—C16—C15 | 118.14 (15) |
C6—C5—H5A | 108.8 | C17—C16—C15 | 123.57 (17) |
C4—C5—H5B | 108.8 | C18—C17—C16 | 118.98 (16) |
C6—C5—H5B | 108.8 | C18—C17—H17 | 120.5 |
H5A—C5—H5B | 107.6 | C16—C17—H17 | 120.5 |
C8—C6—C5 | 107.17 (15) | C19—C18—C17 | 119.53 (17) |
C8—C6—C7 | 107.89 (15) | C19—C18—H18 | 120.2 |
C5—C6—C7 | 115.27 (14) | C17—C18—H18 | 120.2 |
C8—C6—H6 | 108.8 | C18—C19—C20 | 120.73 (18) |
C5—C6—H6 | 108.8 | C18—C19—H19 | 119.6 |
C7—C6—H6 | 108.8 | C20—C19—H19 | 119.6 |
N1—C7—C15 | 110.02 (13) | C15—C20—C19 | 121.07 (15) |
N1—C7—C6 | 109.92 (13) | C15—C20—H20 | 119.5 |
C15—C7—C6 | 111.89 (13) | C19—C20—H20 | 119.5 |
N1—C7—H7 | 108.3 | C1—N1—C7 | 112.94 (12) |
C15—C7—H7 | 108.3 | C1—N1—H1A | 109.7 (12) |
C6—C7—H7 | 108.3 | C7—N1—H1A | 106.9 (12) |
N1—C1—C2—C8 | −57.90 (16) | C9—C10—C11—C12 | −0.1 (3) |
C9—C1—C2—C8 | 179.98 (13) | C10—C11—C12—C13 | −0.9 (3) |
N1—C1—C2—C3 | 62.16 (17) | C11—C12—C13—C14 | 1.4 (3) |
C9—C1—C2—C3 | −59.96 (17) | C12—C13—C14—F1 | 178.41 (16) |
C8—C2—C3—C4 | 52.2 (2) | C12—C13—C14—C9 | −0.9 (3) |
C1—C2—C3—C4 | −68.03 (19) | C10—C9—C14—F1 | −179.44 (15) |
C2—C3—C4—C5 | −43.7 (2) | C1—C9—C14—F1 | −2.3 (2) |
C3—C4—C5—C6 | 44.4 (2) | C10—C9—C14—C13 | −0.1 (3) |
C4—C5—C6—C8 | −53.8 (2) | C1—C9—C14—C13 | 177.01 (16) |
C4—C5—C6—C7 | 66.3 (2) | N1—C7—C15—C16 | −155.80 (16) |
C8—C6—C7—N1 | 56.93 (17) | C6—C7—C15—C16 | 81.71 (19) |
C5—C6—C7—N1 | −62.77 (17) | N1—C7—C15—C20 | 23.5 (2) |
C8—C6—C7—C15 | 179.48 (13) | C6—C7—C15—C20 | −98.96 (18) |
C5—C6—C7—C15 | 59.78 (17) | C20—C15—C16—F2 | −179.68 (16) |
C5—C6—C8—O1 | −113.1 (2) | C7—C15—C16—F2 | −0.3 (3) |
C7—C6—C8—O1 | 122.2 (2) | C20—C15—C16—C17 | −0.9 (3) |
C5—C6—C8—C2 | 64.94 (19) | C7—C15—C16—C17 | 178.47 (18) |
C7—C6—C8—C2 | −59.75 (19) | F2—C16—C17—C18 | 179.38 (18) |
C3—C2—C8—O1 | 113.9 (2) | C15—C16—C17—C18 | 0.6 (3) |
C1—C2—C8—O1 | −121.6 (2) | C16—C17—C18—C19 | 0.1 (3) |
C3—C2—C8—C6 | −64.20 (19) | C17—C18—C19—C20 | −0.4 (3) |
C1—C2—C8—C6 | 60.36 (19) | C16—C15—C20—C19 | 0.5 (3) |
N1—C1—C9—C14 | 162.27 (15) | C7—C15—C20—C19 | −178.81 (17) |
C2—C1—C9—C14 | −76.27 (19) | C18—C19—C20—C15 | 0.1 (3) |
N1—C1—C9—C10 | −20.8 (2) | C9—C1—N1—C7 | −178.60 (13) |
C2—C1—C9—C10 | 100.64 (18) | C2—C1—N1—C7 | 59.20 (17) |
C14—C9—C10—C11 | 0.6 (2) | C15—C7—N1—C1 | 177.51 (13) |
C1—C9—C10—C11 | −176.38 (16) | C6—C7—N1—C1 | −58.84 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···Cgi | 0.90 (4) | 2.72 (2) | 3.58 (16) | 167.3 (19) |
Symmetry code: (i) −x, −y, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C20H19F2NO |
Mr | 327.36 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 298 |
a, b, c (Å) | 7.4699 (3), 10.6621 (4), 10.7131 (4) |
α, β, γ (°) | 78.027 (2), 78.946 (2), 87.201 (2) |
V (Å3) | 819.16 (5) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.42 × 0.38 × 0.12 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 1999) |
Tmin, Tmax | 0.960, 0.989 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11219, 3913, 2564 |
Rint | 0.021 |
(sin θ/λ)max (Å−1) | 0.672 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.156, 0.81 |
No. of reflections | 3913 |
No. of parameters | 221 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.17, −0.20 |
Computer programs: APEX2 (Bruker, 2004), SAINT-Plus (Bruker, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···Cgi | 0.90 (4) | 2.72 (2) | 3.58 (16) | 167.3 (19) |
Symmetry code: (i) −x, −y, −z+2. |
Acknowledgements
The authors acknowledge the Department of Chemistry, IIT Madras, for the X-ray data collection.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
3-Azabicyclononanes are important class of heterocycles due to their presence in numerous naturally occurring diterpenoid/norditerpenoid alkaloids and broad spectrum biological activities (Jeyaraman & Avila, 1981; Hardick et al., 1996). Since the stereochemistry plays crucial role in exploiting biological activities, it is essential to establish the stereochemistry of the bio-active molecules. Irrespective of the nature and position of the substituents on the phenyl, similar compounds show twin-chair conformation (Parthiban et al. (2008a,b, 2009; Parthiban, Ramkumar, Kim et al. (2008), Parthiban, Ramkumar, Santan et al., 2008; ; Parthiban, Thirumurugan et al.,2008). However, to explore the impact of fluorine atom, substituted at ortho position of the phenyl groups on both sides of the hetero atom, we have carried out the single-crystal x-ray diffraction study for the title compound.
The title compound C20H19F2NO, (I), exists in twin-chair conformation with equatorial orientation of the ortho-fluorophenyl group on both sides of the secondary amino group with the torsion angle of C8—C2—C1—C9 and C8—C6—C7—C15 as 179.99 (3) and 179.48 (4)°, respectively. The aryl groups are orientated at an angle of 25.68 (4)° to each other. In both aryl groups, the F atom is pointed towards the carbonyl group (Figure 1.). Analysis of torsion angles, asymmetry parameters and least-squares plane calculation shows that the piperidine ring adopts near ideal chair conformation with the deviation of ring atoms N1 and C8 from the C1/C2/C6/C7 plane by -0.654 (3) Å and 0.696 (3) Å, respectively; QT = 0.6002 (18) Å, q(2)= 0.0242 (17) Å, q(3)=-0.5996 (18) Å, θ = 177.54 (16)° whereas the cyclohexane ring atoms C4 and C8 deviate from the C2/C3/C5/C6 plane by -0.529 (4) Å and 0.727 (3) Å, respectively; QT = 0.565 (2) Å, q(2)= 0.146 (2) Å, q(3)= -0.546 (2) Å, θ = 165.1 (2)° (Cremer & Pople, 1975). Hence, the title compound (I) shows appreciable deviation from the ideal chair conformation of the cyclohexane moiety. The crystal structure is stabilized by intermolecular N—H···π interaction (Figure 2.).