organic compounds
(11R)-13-Dimethylammonio-11,13-dihydro-4,5-epoxycostunolide semifumarate
aDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Kentucky, Lexington, KY 40536, USA, and bDepartment of Chemistry, University of Kentucky, Lexington, KY 40506, USA
*Correspondence e-mail: pcrooks@email.uky.edu
Crystals of the title salt, C17H28NO3+·C4H3O4−, were obtained by reacting parthenolide with dimethylamine followed by conversion of the amine adduct into a water-soluble fumarate salt. Subsequent crystallization of the fumarate salt from water afforded colorless orthorhombic crystals. The amine addition is highly stereospecific yielding exclusively a single diastereomer with R-configuration at the newly formed C-11 chiral carbon. In the crystal, intermolecular O—H⋯O and N—H⋯O hydrogen bonds help to establish the packing.
Related literature
Parthenolide (PTL) is a naturally occurring sesquiterpene lactone used in the treatment of fever, migraine headaches, rheumatoid arthritis, and also as an anti-inflammatory agent (Heptinstall et al. (1988). For the potent anti-tumor and cytotoxic properties of PTL, see: Crooks et al. (2007). The absolute stereochemistry of the C-11 chiral carbon is typical of such amine adducts of parthenolide, see: Nasim et al. (2007a,b). For bond-length data, see: Allen et al. (1987).
Experimental
Crystal data
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Data collection: APEX2 (Bruker–Nonius, 2006); cell SAINT (Bruker–Nonius, 2006); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 and local procedures.
Supporting information
10.1107/S1600536809021941/hg2516sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809021941/hg2516Isup2.hkl
The title compound (Systematic name: 13-(N,N-dimethyl)-amino-4 α,5 β- epoxy-4,10-dimethyl-6 α-hydroxy-12-oicacid-γ-lactone-germacra-1(10)-ene monofumarate) was synthesized by dissolving PTL (25 mg, 0.1 mmol) in 8 ml of methanol followed by addition of dimethylamine (0.15 mmol, 2.0M solution in methanol). The mixture stirred under ambient conditions for 6 hrs. The crude product was subjected to flash silica gel to afford the pure dimethylamino analog free base. The free base was then converted to the fumarate salt by dissolving it in diethyl ether followed by addition of one equivalent of fumaric acid. The white solid that precipitated out of the diethyl ether solution was filtered, washed with diethyl ether and then dried under vacuum. Crystallization of the obtained white solid from water afforded colorless crystals that were suitable for X-ray analysis. 1H-NMR (D20, 300 MHz):δ 6.67 2H, s, (HOOC-CH)2–), 5.24 (1H, dd, J=2.1, 12.0 Hz, 1-CH), 4.30 (1H, t, J=9.0 Hz, 6-CH), 1.88–3.60 (13H, m, 2-CH2, 3-CH2, 8-CH2, 9-CH2, 13-CH2, 5-CH, 7-CH, 11-CH), 2.98 (6H, s, N-(CH3)2), 1.70 (3H, s, 14-CH3), 1.34 (3H, s, 15-CH3) p.p.m. 13C-NMR (DMSO-d6, 75 MHz): δ 179.8 ((HOOC-CH)2–), 173.8 (12-C=O), 138.2 ((HOOC-CH)2–),137.2 (10-C), 127.3 (1-C), 85.8 (6-C), 69.2 (N-(CH3)2), 67.1 (5-C), 58.3 (4-C), 49.6 (7-C), 44.9 (11-C), 42.5 (9-C), 38.1 (3-C), 30.9 (8-C), 26.1(2-C), 18.7 (15-C), 18.6 (14-C)p.p.m. Elemental analysis: calc. for C21H31NO7: C 61.60%, H 7.63%, N 3.42%. Found: C 61.81%, H 7.64%, N 3.47%.
H atoms were found in difference Fourier maps and subsequently placed in idealized positions with constrained distances of 0.98 Å (RCH3), 0.99 Å (R2CH2), 1.00 Å (R3CH), 0.95 Å (Csp2H), 0.84 Å (O—H), 0.93 Å (N—H), and with Uiso(H) values set to either 1.2Ueq or 1.5Ueq (RCH3, OH) of the attached atom.
Data collection: APEX2 (Bruker–Nonius, 2006); cell
SAINT (Bruker–Nonius, 2006); data reduction: SAINT (Bruker–Nonius, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELX97 (Sheldrick, 2008) and local procedures.C17H28NO3+·C4H3O4− | F(000) = 880 |
Mr = 409.47 | Dx = 1.290 Mg m−3 |
Orthorhombic, P212121 | Cu Kα radiation, λ = 1.54178 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 5373 reflections |
a = 6.3164 (1) Å | θ = 3.5–68.0° |
b = 15.1650 (2) Å | µ = 0.80 mm−1 |
c = 22.0028 (3) Å | T = 90 K |
V = 2107.61 (5) Å3 | Block, colourless |
Z = 4 | 0.26 × 0.20 × 0.10 mm |
Bruker X8 Proteum diffractometer | 3762 independent reflections |
Radiation source: fine-focus rotating anode | 3640 reflections with I > 2σ(I) |
Graded multilayer optics monochromator | Rint = 0.041 |
Detector resolution: 5.6 pixels mm-1 | θmax = 68.0°, θmin = 3.5° |
ϕ and ω scans | h = −7→7 |
Absorption correction: multi-scan (SADABS in APEX2; Bruker–Nonius, 2006) | k = −15→18 |
Tmin = 0.788, Tmax = 0.924 | l = −26→26 |
16991 measured reflections |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.027 | w = 1/[σ2(Fo2) + (0.0359P)2 + 0.3552P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.069 | (Δ/σ)max = 0.001 |
S = 1.04 | Δρmax = 0.20 e Å−3 |
3762 reflections | Δρmin = −0.14 e Å−3 |
268 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 restraints | Extinction coefficient: 0.00093 (19) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 1525 Friedel pairs |
Secondary atom site location: difference Fourier map | Absolute structure parameter: −0.01 (4) |
C17H28NO3+·C4H3O4− | V = 2107.61 (5) Å3 |
Mr = 409.47 | Z = 4 |
Orthorhombic, P212121 | Cu Kα radiation |
a = 6.3164 (1) Å | µ = 0.80 mm−1 |
b = 15.1650 (2) Å | T = 90 K |
c = 22.0028 (3) Å | 0.26 × 0.20 × 0.10 mm |
Bruker X8 Proteum diffractometer | 3762 independent reflections |
Absorption correction: multi-scan (SADABS in APEX2; Bruker–Nonius, 2006) | 3640 reflections with I > 2σ(I) |
Tmin = 0.788, Tmax = 0.924 | Rint = 0.041 |
16991 measured reflections |
R[F2 > 2σ(F2)] = 0.027 | H-atom parameters constrained |
wR(F2) = 0.069 | Δρmax = 0.20 e Å−3 |
S = 1.04 | Δρmin = −0.14 e Å−3 |
3762 reflections | Absolute structure: Flack (1983), 1525 Friedel pairs |
268 parameters | Absolute structure parameter: −0.01 (4) |
0 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. Flack x(u) obtained by Parsons quotient method, as implemented in XPREP. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.57684 (17) | 0.48961 (7) | −0.06421 (5) | 0.0150 (2) | |
H1N | 0.5070 | 0.4514 | −0.0379 | 0.018* | |
O1 | 0.50601 (15) | 0.85986 (6) | 0.14786 (4) | 0.0179 (2) | |
O2 | 0.47768 (14) | 0.76214 (6) | 0.03689 (4) | 0.0166 (2) | |
O3 | 0.50611 (14) | 0.73366 (6) | −0.06201 (4) | 0.0173 (2) | |
C1 | 0.7548 (2) | 0.65406 (9) | 0.23912 (6) | 0.0186 (3) | |
H1 | 0.8861 | 0.6573 | 0.2182 | 0.022* | |
C2 | 0.7092 (2) | 0.72736 (9) | 0.28283 (6) | 0.0200 (3) | |
H2A | 0.8339 | 0.7369 | 0.3093 | 0.024* | |
H2B | 0.5881 | 0.7107 | 0.3090 | 0.024* | |
C3 | 0.6567 (2) | 0.81361 (9) | 0.24889 (6) | 0.0187 (3) | |
H3A | 0.5997 | 0.8572 | 0.2781 | 0.022* | |
H3B | 0.7881 | 0.8382 | 0.2312 | 0.022* | |
C4 | 0.4967 (2) | 0.79867 (9) | 0.19886 (6) | 0.0161 (3) | |
C5 | 0.5848 (2) | 0.77075 (8) | 0.13995 (5) | 0.0150 (3) | |
H5 | 0.7427 | 0.7662 | 0.1394 | 0.018* | |
C6 | 0.4759 (2) | 0.71234 (9) | 0.09449 (5) | 0.0158 (3) | |
H6 | 0.3272 | 0.6999 | 0.1075 | 0.019* | |
C7 | 0.5921 (2) | 0.62571 (8) | 0.07898 (5) | 0.0151 (3) | |
H7 | 0.7481 | 0.6367 | 0.0806 | 0.018* | |
C8 | 0.5420 (2) | 0.54314 (9) | 0.11684 (6) | 0.0186 (3) | |
H8A | 0.5512 | 0.4911 | 0.0898 | 0.022* | |
H8B | 0.3937 | 0.5475 | 0.1311 | 0.022* | |
C9 | 0.6848 (2) | 0.52658 (9) | 0.17255 (6) | 0.0191 (3) | |
H9A | 0.6706 | 0.4642 | 0.1851 | 0.023* | |
H9B | 0.8341 | 0.5364 | 0.1607 | 0.023* | |
C10 | 0.6331 (2) | 0.58485 (9) | 0.22608 (6) | 0.0182 (3) | |
C11 | 0.52671 (19) | 0.61351 (9) | 0.01203 (5) | 0.0146 (3) | |
H11 | 0.3850 | 0.5841 | 0.0108 | 0.018* | |
C12 | 0.50272 (19) | 0.70680 (9) | −0.01048 (5) | 0.0152 (3) | |
C13 | 0.6820 (2) | 0.55958 (9) | −0.02661 (6) | 0.0155 (3) | |
H13A | 0.7598 | 0.6001 | −0.0540 | 0.019* | |
H13B | 0.7868 | 0.5313 | 0.0006 | 0.019* | |
C14 | 0.4359 (2) | 0.55947 (10) | 0.26023 (6) | 0.0238 (3) | |
H14A | 0.4091 | 0.6027 | 0.2924 | 0.036* | |
H14B | 0.4549 | 0.5009 | 0.2783 | 0.036* | |
H14C | 0.3154 | 0.5583 | 0.2322 | 0.036* | |
C15 | 0.2737 (2) | 0.77859 (10) | 0.21831 (6) | 0.0209 (3) | |
H15A | 0.2179 | 0.8281 | 0.2420 | 0.031* | |
H15B | 0.2727 | 0.7251 | 0.2433 | 0.031* | |
H15C | 0.1851 | 0.7695 | 0.1823 | 0.031* | |
C16 | 0.7432 (2) | 0.43816 (10) | −0.09703 (6) | 0.0211 (3) | |
H16A | 0.6762 | 0.3908 | −0.1204 | 0.032* | |
H16B | 0.8420 | 0.4127 | −0.0675 | 0.032* | |
H16C | 0.8204 | 0.4773 | −0.1247 | 0.032* | |
C17 | 0.4184 (2) | 0.52542 (10) | −0.10767 (6) | 0.0221 (3) | |
H17A | 0.4871 | 0.5680 | −0.1347 | 0.033* | |
H17B | 0.3047 | 0.5548 | −0.0851 | 0.033* | |
H17C | 0.3589 | 0.4771 | −0.1318 | 0.033* | |
O4 | −0.44376 (14) | 0.24575 (7) | 0.08148 (4) | 0.0203 (2) | |
H4 | −0.4761 | 0.2890 | 0.0595 | 0.030* | |
O5 | −0.15889 (15) | 0.19509 (7) | 0.12810 (4) | 0.0218 (2) | |
O6 | 0.40728 (13) | 0.37319 (6) | 0.01876 (4) | 0.0173 (2) | |
O7 | 0.12629 (15) | 0.46177 (7) | 0.01397 (5) | 0.0241 (2) | |
C18 | −0.2399 (2) | 0.24937 (9) | 0.09497 (5) | 0.0161 (3) | |
C19 | −0.1193 (2) | 0.32332 (9) | 0.06681 (6) | 0.0178 (3) | |
H19 | −0.1953 | 0.3724 | 0.0512 | 0.021* | |
C20 | 0.0892 (2) | 0.32310 (9) | 0.06284 (6) | 0.0183 (3) | |
H20 | 0.1650 | 0.2766 | 0.0820 | 0.022* | |
C21 | 0.21235 (19) | 0.39254 (9) | 0.02961 (6) | 0.0164 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0157 (5) | 0.0132 (6) | 0.0161 (5) | −0.0008 (4) | 0.0006 (4) | 0.0002 (4) |
O1 | 0.0244 (5) | 0.0109 (5) | 0.0184 (4) | 0.0016 (4) | 0.0014 (4) | 0.0005 (3) |
O2 | 0.0190 (4) | 0.0151 (5) | 0.0159 (4) | 0.0024 (4) | 0.0009 (3) | 0.0014 (4) |
O3 | 0.0150 (4) | 0.0191 (5) | 0.0177 (4) | 0.0008 (4) | −0.0013 (4) | 0.0027 (4) |
C1 | 0.0177 (6) | 0.0190 (8) | 0.0191 (6) | 0.0032 (5) | −0.0013 (5) | 0.0031 (5) |
C2 | 0.0217 (7) | 0.0186 (7) | 0.0197 (6) | −0.0007 (5) | −0.0042 (5) | 0.0006 (5) |
C3 | 0.0212 (6) | 0.0147 (8) | 0.0201 (6) | −0.0005 (5) | 0.0013 (5) | −0.0025 (5) |
C4 | 0.0188 (6) | 0.0114 (7) | 0.0182 (6) | 0.0029 (5) | 0.0024 (5) | 0.0007 (5) |
C5 | 0.0163 (6) | 0.0101 (7) | 0.0184 (6) | 0.0010 (5) | 0.0017 (5) | 0.0006 (5) |
C6 | 0.0159 (6) | 0.0162 (7) | 0.0153 (5) | 0.0008 (5) | 0.0018 (5) | 0.0026 (5) |
C7 | 0.0147 (6) | 0.0146 (7) | 0.0159 (6) | −0.0003 (5) | 0.0011 (5) | 0.0007 (5) |
C8 | 0.0233 (7) | 0.0144 (7) | 0.0181 (6) | −0.0019 (5) | 0.0005 (5) | 0.0000 (5) |
C9 | 0.0247 (7) | 0.0124 (7) | 0.0202 (6) | 0.0019 (5) | 0.0004 (5) | 0.0028 (5) |
C10 | 0.0221 (7) | 0.0161 (7) | 0.0163 (6) | 0.0036 (5) | −0.0017 (5) | 0.0034 (5) |
C11 | 0.0134 (6) | 0.0136 (7) | 0.0167 (6) | −0.0002 (5) | 0.0009 (5) | −0.0004 (5) |
C12 | 0.0086 (5) | 0.0179 (7) | 0.0192 (6) | 0.0002 (5) | −0.0012 (5) | −0.0014 (5) |
C13 | 0.0138 (6) | 0.0149 (7) | 0.0179 (6) | −0.0003 (5) | −0.0009 (5) | −0.0011 (5) |
C14 | 0.0297 (8) | 0.0201 (8) | 0.0215 (6) | −0.0038 (6) | 0.0035 (6) | −0.0005 (5) |
C15 | 0.0181 (6) | 0.0243 (8) | 0.0202 (6) | 0.0021 (6) | 0.0026 (5) | −0.0001 (6) |
C16 | 0.0211 (7) | 0.0194 (8) | 0.0227 (6) | 0.0001 (6) | 0.0043 (6) | −0.0050 (5) |
C17 | 0.0232 (7) | 0.0209 (8) | 0.0221 (6) | −0.0002 (6) | −0.0072 (5) | −0.0012 (6) |
O4 | 0.0131 (4) | 0.0204 (5) | 0.0274 (5) | −0.0009 (4) | −0.0008 (4) | 0.0083 (4) |
O5 | 0.0182 (5) | 0.0228 (6) | 0.0244 (5) | 0.0004 (4) | 0.0000 (4) | 0.0074 (4) |
O6 | 0.0126 (4) | 0.0167 (5) | 0.0227 (5) | −0.0007 (4) | 0.0014 (4) | 0.0025 (4) |
O7 | 0.0164 (5) | 0.0175 (6) | 0.0383 (5) | 0.0004 (4) | −0.0013 (4) | 0.0075 (4) |
C18 | 0.0140 (6) | 0.0174 (7) | 0.0170 (6) | 0.0004 (5) | 0.0014 (5) | −0.0008 (5) |
C19 | 0.0164 (6) | 0.0139 (7) | 0.0230 (7) | 0.0008 (5) | −0.0002 (5) | 0.0018 (5) |
C20 | 0.0160 (6) | 0.0184 (8) | 0.0205 (6) | 0.0002 (5) | −0.0014 (5) | 0.0046 (5) |
C21 | 0.0145 (6) | 0.0164 (7) | 0.0183 (6) | −0.0020 (5) | −0.0027 (5) | −0.0002 (5) |
N1—C17 | 1.4870 (17) | C9—H9A | 0.9900 |
N1—C16 | 1.4948 (17) | C9—H9B | 0.9900 |
N1—C13 | 1.5005 (16) | C10—C14 | 1.505 (2) |
N1—H1N | 0.9300 | C11—C12 | 1.5064 (19) |
O1—C5 | 1.4507 (16) | C11—C13 | 1.5344 (17) |
O1—C4 | 1.4574 (15) | C11—H11 | 1.0000 |
O2—C12 | 1.3474 (15) | C13—H13A | 0.9900 |
O2—C6 | 1.4754 (14) | C13—H13B | 0.9900 |
O3—C12 | 1.2050 (15) | C14—H14A | 0.9800 |
C1—C10 | 1.332 (2) | C14—H14B | 0.9800 |
C1—C2 | 1.4980 (19) | C14—H14C | 0.9800 |
C1—H1 | 0.9500 | C15—H15A | 0.9800 |
C2—C3 | 1.5422 (19) | C15—H15B | 0.9800 |
C2—H2A | 0.9900 | C15—H15C | 0.9800 |
C2—H2B | 0.9900 | C16—H16A | 0.9800 |
C3—C4 | 1.5114 (19) | C16—H16B | 0.9800 |
C3—H3A | 0.9900 | C16—H16C | 0.9800 |
C3—H3B | 0.9900 | C17—H17A | 0.9800 |
C4—C5 | 1.4728 (17) | C17—H17B | 0.9800 |
C4—C15 | 1.5032 (18) | C17—H17C | 0.9800 |
C5—C6 | 1.5027 (18) | O4—C18 | 1.3224 (15) |
C5—H5 | 1.0000 | O4—H4 | 0.8400 |
C6—C7 | 1.5429 (18) | O5—C18 | 1.2128 (16) |
C6—H6 | 1.0000 | O6—C21 | 1.2880 (16) |
C7—C8 | 1.5368 (18) | O7—C21 | 1.2314 (17) |
C7—C11 | 1.5411 (17) | C18—C19 | 1.4905 (19) |
C7—H7 | 1.0000 | C19—C20 | 1.3199 (19) |
C8—C9 | 1.5427 (18) | C19—H19 | 0.9500 |
C8—H8A | 0.9900 | C20—C21 | 1.4996 (18) |
C8—H8B | 0.9900 | C20—H20 | 0.9500 |
C9—C10 | 1.5084 (18) | ||
C17—N1—C16 | 110.68 (10) | C8—C9—H9B | 108.9 |
C17—N1—C13 | 113.23 (10) | H9A—C9—H9B | 107.7 |
C16—N1—C13 | 108.92 (10) | C1—C10—C14 | 124.88 (12) |
C17—N1—H1N | 108.0 | C1—C10—C9 | 120.31 (12) |
C16—N1—H1N | 108.0 | C14—C10—C9 | 114.79 (12) |
C13—N1—H1N | 108.0 | C12—C11—C13 | 112.50 (10) |
C5—O1—C4 | 60.85 (8) | C12—C11—C7 | 103.21 (10) |
C12—O2—C6 | 110.27 (10) | C13—C11—C7 | 114.98 (10) |
C10—C1—C2 | 127.72 (12) | C12—C11—H11 | 108.6 |
C10—C1—H1 | 116.1 | C13—C11—H11 | 108.6 |
C2—C1—H1 | 116.1 | C7—C11—H11 | 108.6 |
C1—C2—C3 | 111.09 (10) | O3—C12—O2 | 121.29 (12) |
C1—C2—H2A | 109.4 | O3—C12—C11 | 128.68 (12) |
C3—C2—H2A | 109.4 | O2—C12—C11 | 110.03 (10) |
C1—C2—H2B | 109.4 | N1—C13—C11 | 113.53 (10) |
C3—C2—H2B | 109.4 | N1—C13—H13A | 108.9 |
H2A—C2—H2B | 108.0 | C11—C13—H13A | 108.9 |
C4—C3—C2 | 111.67 (11) | N1—C13—H13B | 108.9 |
C4—C3—H3A | 109.3 | C11—C13—H13B | 108.9 |
C2—C3—H3A | 109.3 | H13A—C13—H13B | 107.7 |
C4—C3—H3B | 109.3 | C10—C14—H14A | 109.5 |
C2—C3—H3B | 109.3 | C10—C14—H14B | 109.5 |
H3A—C3—H3B | 107.9 | H14A—C14—H14B | 109.5 |
O1—C4—C5 | 59.35 (8) | C10—C14—H14C | 109.5 |
O1—C4—C15 | 112.71 (10) | H14A—C14—H14C | 109.5 |
C5—C4—C15 | 123.12 (12) | H14B—C14—H14C | 109.5 |
O1—C4—C3 | 115.99 (11) | C4—C15—H15A | 109.5 |
C5—C4—C3 | 115.55 (11) | C4—C15—H15B | 109.5 |
C15—C4—C3 | 116.71 (11) | H15A—C15—H15B | 109.5 |
O1—C5—C4 | 59.80 (8) | C4—C15—H15C | 109.5 |
O1—C5—C6 | 118.16 (10) | H15A—C15—H15C | 109.5 |
C4—C5—C6 | 125.61 (11) | H15B—C15—H15C | 109.5 |
O1—C5—H5 | 114.1 | N1—C16—H16A | 109.5 |
C4—C5—H5 | 114.1 | N1—C16—H16B | 109.5 |
C6—C5—H5 | 114.1 | H16A—C16—H16B | 109.5 |
O2—C6—C5 | 105.46 (10) | N1—C16—H16C | 109.5 |
O2—C6—C7 | 104.02 (9) | H16A—C16—H16C | 109.5 |
C5—C6—C7 | 115.56 (10) | H16B—C16—H16C | 109.5 |
O2—C6—H6 | 110.5 | N1—C17—H17A | 109.5 |
C5—C6—H6 | 110.5 | N1—C17—H17B | 109.5 |
C7—C6—H6 | 110.5 | H17A—C17—H17B | 109.5 |
C8—C7—C11 | 111.41 (10) | N1—C17—H17C | 109.5 |
C8—C7—C6 | 118.42 (10) | H17A—C17—H17C | 109.5 |
C11—C7—C6 | 100.73 (10) | H17B—C17—H17C | 109.5 |
C8—C7—H7 | 108.6 | C18—O4—H4 | 109.5 |
C11—C7—H7 | 108.6 | O5—C18—O4 | 121.16 (12) |
C6—C7—H7 | 108.6 | O5—C18—C19 | 123.02 (12) |
C7—C8—C9 | 116.29 (11) | O4—C18—C19 | 115.82 (11) |
C7—C8—H8A | 108.2 | C20—C19—C18 | 122.38 (13) |
C9—C8—H8A | 108.2 | C20—C19—H19 | 118.8 |
C7—C8—H8B | 108.2 | C18—C19—H19 | 118.8 |
C9—C8—H8B | 108.2 | C19—C20—C21 | 123.24 (13) |
H8A—C8—H8B | 107.4 | C19—C20—H20 | 118.4 |
C10—C9—C8 | 113.48 (11) | C21—C20—H20 | 118.4 |
C10—C9—H9A | 108.9 | O7—C21—O6 | 124.37 (12) |
C8—C9—H9A | 108.9 | O7—C21—C20 | 120.40 (12) |
C10—C9—H9B | 108.9 | O6—C21—C20 | 115.23 (12) |
C10—C1—C2—C3 | −107.32 (15) | C7—C8—C9—C10 | 76.93 (14) |
C1—C2—C3—C4 | 47.74 (15) | C2—C1—C10—C14 | −9.6 (2) |
C5—O1—C4—C15 | −116.14 (13) | C2—C1—C10—C9 | 168.47 (12) |
C5—O1—C4—C3 | 105.60 (13) | C8—C9—C10—C1 | −103.08 (15) |
C2—C3—C4—O1 | −152.71 (11) | C8—C9—C10—C14 | 75.20 (15) |
C2—C3—C4—C5 | −86.02 (14) | C8—C7—C11—C12 | 157.79 (10) |
C2—C3—C4—C15 | 70.72 (15) | C6—C7—C11—C12 | 31.31 (11) |
C4—O1—C5—C6 | 116.91 (12) | C8—C7—C11—C13 | −79.31 (13) |
C15—C4—C5—O1 | 98.58 (13) | C6—C7—C11—C13 | 154.20 (11) |
C3—C4—C5—O1 | −106.34 (12) | C6—O2—C12—O3 | 179.12 (11) |
O1—C4—C5—C6 | −104.76 (14) | C6—O2—C12—C11 | −1.67 (13) |
C15—C4—C5—C6 | −6.2 (2) | C13—C11—C12—O3 | 34.87 (18) |
C3—C4—C5—C6 | 148.90 (12) | C7—C11—C12—O3 | 159.39 (13) |
C12—O2—C6—C5 | 144.48 (10) | C13—C11—C12—O2 | −144.26 (10) |
C12—O2—C6—C7 | 22.45 (12) | C7—C11—C12—O2 | −19.74 (13) |
O1—C5—C6—O2 | 54.19 (13) | C17—N1—C13—C11 | 59.61 (14) |
C4—C5—C6—O2 | 125.63 (13) | C16—N1—C13—C11 | −176.80 (10) |
O1—C5—C6—C7 | 168.46 (10) | C12—C11—C13—N1 | −109.70 (12) |
C4—C5—C6—C7 | −120.11 (13) | C7—C11—C13—N1 | 132.54 (11) |
O2—C6—C7—C8 | −154.30 (11) | O5—C18—C19—C20 | 17.7 (2) |
C5—C6—C7—C8 | 90.61 (13) | O4—C18—C19—C20 | −162.07 (13) |
O2—C6—C7—C11 | −32.63 (11) | C18—C19—C20—C21 | 174.10 (11) |
C5—C6—C7—C11 | −147.72 (10) | C19—C20—C21—O7 | 13.5 (2) |
C11—C7—C8—C9 | 151.72 (11) | C19—C20—C21—O6 | −165.65 (13) |
C6—C7—C8—C9 | −92.20 (14) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O6 | 0.93 | 1.83 | 2.7563 (14) | 172 |
O4—H4···O6i | 0.84 | 1.73 | 2.5544 (13) | 169 |
Symmetry code: (i) x−1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C17H28NO3+·C4H3O4− |
Mr | 409.47 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 90 |
a, b, c (Å) | 6.3164 (1), 15.1650 (2), 22.0028 (3) |
V (Å3) | 2107.61 (5) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 0.80 |
Crystal size (mm) | 0.26 × 0.20 × 0.10 |
Data collection | |
Diffractometer | Bruker X8 Proteum diffractometer |
Absorption correction | Multi-scan (SADABS in APEX2; Bruker–Nonius, 2006) |
Tmin, Tmax | 0.788, 0.924 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16991, 3762, 3640 |
Rint | 0.041 |
(sin θ/λ)max (Å−1) | 0.601 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.027, 0.069, 1.04 |
No. of reflections | 3762 |
No. of parameters | 268 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.20, −0.14 |
Absolute structure | Flack (1983), 1525 Friedel pairs |
Absolute structure parameter | −0.01 (4) |
Computer programs: APEX2 (Bruker–Nonius, 2006), SAINT (Bruker–Nonius, 2006), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), XP in SHELXTL (Sheldrick, 2008), SHELX97 (Sheldrick, 2008) and local procedures.
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O6 | 0.93 | 1.83 | 2.7563 (14) | 171.7 |
O4—H4···O6i | 0.84 | 1.73 | 2.5544 (13) | 168.7 |
Symmetry code: (i) x−1, y, z. |
Acknowledgements
This research work was supported by the Kentucky Lung Cancer Research Program.
References
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Parthenolide (PTL) isolated from Tanacetum parthenium (commonly referred as feverfew), is a naturally occurring sesquiterpene lactone used in the treatment of fever, migraine headaches, rheumatoid arthritis, and also as an anti-inflammatory agent (Heptinstall et al., 1988). The PTL molecule and several structurally related analogs have become topics of recent interest because of their potent anti-tumor and cytotoxic properties (Crooks et al., 2007). Despite promising in vitro activity, this potent natural product has a major limitation which precludes its further development as a therapeutic agent, i.e. its poor water-solubility, thus limiting its potential as a promising clinical agent. The title compound crystallized from water as orthorombic crystals. Bond angles and bond distances within the molecule were quite regular with average normal bond lengths (Allen et al., 1987). The absolute stereochemistry of the newly formed C-11 chiral carbon was found to be R, which is typical of such amine adducts of parthenolide (Nasim et al., 2007a, 2007b). Hydrogen bonding was observed between N1—H and O6 of the carbonyl oxygen of the fumarate moiety and between O4—H and O6 (Table 1). The title compound is more water soluble and more biologically potent than the parent compound, in both in vitro and in vivo anti-leukemic activity screens. T he title compound is currently in phase 1 clinical trials.