metal-organic compounds
Hydroxonium creatininium bis(pyridine-2,6-dicarboxylato-κ3O2,N,O6)cobaltate(II) trihydrate
aFaculty of Chemistry, Islamic Azad University, North Tehran Branch, Tehran, Iran, bDepartment of Chemistry, Faculty of Science, Islamic Azad University, Khorramabad Branch, Khorramabad, Iran, cYoung Researchers Club, Islamic Azad University, North Tehran Branch, Tehran, Iran, and dDepartment of Chemistry, Islamic Azad University, Shahr-e-Rey Branch, Tehran, Iran
*Correspondence e-mail: haghabozorg@yahoo.com
The title compound, (C4H8N3O)(H3O)[Co(C7H3NO4)2]·3H2O, contains a protonated creatininium cation, a hydroxonium (H3O)+ cation, a [Co(pydc)2]2− (pydcH2 = pyridine-2,6-dicarboxylic acid) complex anion, and three uncoordinated water molecules. The CoII atom is coordinated by four O and two N atoms from two pydc ligands in a distorted octahedral environment. The structure also contains three uncoordinated water molecules. Extensive intermolecular O—H⋯O, N—H⋯O and C—H⋯O hydrogen bonds, π–π stacking interactions [centroid–centroid distances = 3.565 (14) and 3.425 (14) Å] and O⋯π interactions [O⋯centroid distance = 3.480 (2) Å] connect the various components in the crystal structure.
Related literature
For related structures, see: Aghabozorg, Derikvand et al. (2008); Aghabozorg, Ramezanipour et al. (2008); Moghimi et al. (2004, 2005). For a review article on proton-transfer agents and their metal complexes, see: Aghabozorg, Manteghi et al. (2008). For the isotypic Ni compound, see: Attar Gharamaleki et al. (2009).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2007); cell SAINT-Plus (Bruker, 2007); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536809021837/hy2201sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809021837/hy2201Isup2.hkl
The reaction between pyridine-2,6-dicarboxylic acid (100 mg, 1 mmol) in 10 ml water, cratinine (110 mg, 1 mmol) in 20 ml water and Co(NO3)2.6H2O (87 mg, 0.5 mmol) in 5 ml water at a 2:2:1 molar ratio gave a red compound after slow evaporation of the solvent at the room temperature. The crystals obtained were stable in air.
H atoms on O and N atoms were found from difference Fourier maps. H atoms on C atoms were positioned geometrically. All H atoms were refined in riding models, with Uiso(H) = 1.2(1.5 for methyl)Ueq(C,N) or 1.5Ueq(O).
Data collection: SMART (Bruker, 2007); cell
SAINT-Plus (Bruker, 2007); data reduction: SAINT-Plus (Bruker, 2007); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. Molecular structure of the title compound. Displacement ellipsoids are drawn at the 50% probability level. | |
Fig. 2. Packing diagram of the title compound. Hydrogen bonds are shown by dashed lines. | |
Fig. 3. The π–π and O···π stacking interactions in the title compound. The centroid–centroid distances are 3.425 (14) Å between Cg1 (N1, C2–C6) and Cg1i, and 3.565 (14) Å between Cg2ii (N2ii, C9ii–C13ii) and Cg2iii. The O7···Cg2iii distance is 3.480 (2) Å. [Symmetry codes: (i) 1-x, 2-y, 1-z; (ii) 1+x, y, z; (iii) 1-x, 2-y, -z.] |
(C4H8N3O)(H3O)[Co(C7H3NO4)2]·3H2O | Z = 2 |
Mr = 576.34 | F(000) = 594 |
Triclinic, P1 | Dx = 1.677 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.0937 (10) Å | Cell parameters from 843 reflections |
b = 10.7389 (13) Å | θ = 3–27° |
c = 13.5976 (17) Å | µ = 0.83 mm−1 |
α = 104.811 (2)° | T = 120 K |
β = 90.267 (2)° | Prism, red |
γ = 92.415 (1)° | 0.18 × 0.12 × 0.09 mm |
V = 1141.4 (2) Å3 |
Bruker SMART 1000 CCD diffractometer | 5488 independent reflections |
Radiation source: fine-focus sealed tube | 4149 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.025 |
ϕ and ω scans | θmax = 28.0°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −10→10 |
Tmin = 0.889, Tmax = 0.930 | k = −14→14 |
11652 measured reflections | l = −17→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: mixed |
wR(F2) = 0.097 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.015P)2 + 2.6P] where P = (Fo2 + 2Fc2)/3 |
5488 reflections | (Δ/σ)max < 0.001 |
335 parameters | Δρmax = 0.77 e Å−3 |
0 restraints | Δρmin = −0.45 e Å−3 |
(C4H8N3O)(H3O)[Co(C7H3NO4)2]·3H2O | γ = 92.415 (1)° |
Mr = 576.34 | V = 1141.4 (2) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.0937 (10) Å | Mo Kα radiation |
b = 10.7389 (13) Å | µ = 0.83 mm−1 |
c = 13.5976 (17) Å | T = 120 K |
α = 104.811 (2)° | 0.18 × 0.12 × 0.09 mm |
β = 90.267 (2)° |
Bruker SMART 1000 CCD diffractometer | 5488 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 4149 reflections with I > 2σ(I) |
Tmin = 0.889, Tmax = 0.930 | Rint = 0.025 |
11652 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 0 restraints |
wR(F2) = 0.097 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.77 e Å−3 |
5488 reflections | Δρmin = −0.45 e Å−3 |
335 parameters |
x | y | z | Uiso*/Ueq | ||
Co1 | 0.26506 (4) | 0.93000 (3) | 0.23131 (3) | 0.01942 (10) | |
O1 | 0.4562 (2) | 0.78341 (18) | 0.19033 (13) | 0.0230 (4) | |
O2 | 0.6104 (2) | 0.65616 (18) | 0.25814 (14) | 0.0252 (4) | |
O3 | 0.0940 (2) | 1.13617 (18) | 0.50661 (14) | 0.0254 (4) | |
O4 | 0.1083 (2) | 1.04931 (18) | 0.33852 (13) | 0.0232 (4) | |
O5 | 0.0722 (2) | 0.78287 (17) | 0.16490 (13) | 0.0220 (4) | |
O6 | −0.0601 (2) | 0.69039 (18) | 0.01715 (13) | 0.0249 (4) | |
O7 | 0.4810 (2) | 1.23340 (18) | 0.13445 (13) | 0.0238 (4) | |
O8 | 0.4131 (2) | 1.09779 (18) | 0.22942 (13) | 0.0241 (4) | |
O9 | 0.2979 (2) | 0.47606 (19) | 0.53766 (14) | 0.0287 (4) | |
N1 | 0.3283 (2) | 0.89101 (19) | 0.36453 (15) | 0.0161 (4) | |
N2 | 0.2268 (2) | 0.9517 (2) | 0.08903 (15) | 0.0170 (4) | |
N3 | 0.1336 (3) | 0.5901 (2) | 0.45644 (15) | 0.0181 (4) | |
H3A | 0.0801 | 0.6346 | 0.5091 | 0.022* | |
N4 | 0.2130 (3) | 0.5206 (2) | 0.29648 (16) | 0.0202 (4) | |
N5 | 0.0027 (3) | 0.6690 (2) | 0.33142 (15) | 0.0210 (5) | |
H5A | −0.0074 | 0.6703 | 0.2672 | 0.025* | |
H5B | −0.0602 | 0.7165 | 0.3776 | 0.025* | |
C1 | 0.5092 (3) | 0.7418 (2) | 0.26371 (18) | 0.0188 (5) | |
C2 | 0.4403 (3) | 0.8035 (2) | 0.36658 (19) | 0.0180 (5) | |
C3 | 0.4860 (3) | 0.7762 (2) | 0.45730 (19) | 0.0198 (5) | |
H3B | 0.5660 | 0.7143 | 0.4584 | 0.024* | |
C4 | 0.4112 (3) | 0.8422 (2) | 0.54679 (19) | 0.0203 (5) | |
H4A | 0.4382 | 0.8245 | 0.6098 | 0.024* | |
C5 | 0.2971 (3) | 0.9341 (2) | 0.54291 (19) | 0.0206 (5) | |
H5C | 0.2460 | 0.9807 | 0.6031 | 0.025* | |
C6 | 0.2589 (3) | 0.9566 (2) | 0.44902 (18) | 0.0174 (5) | |
C7 | 0.1427 (3) | 1.0555 (2) | 0.43192 (19) | 0.0190 (5) | |
C8 | 0.0403 (3) | 0.7707 (2) | 0.07148 (18) | 0.0191 (5) | |
C9 | 0.1295 (3) | 0.8660 (2) | 0.02324 (18) | 0.0177 (5) | |
C10 | 0.1127 (3) | 0.8709 (3) | −0.07723 (19) | 0.0201 (5) | |
H10A | 0.0447 | 0.8087 | −0.1240 | 0.024* | |
C11 | 0.1983 (3) | 0.9690 (3) | −0.10736 (19) | 0.0222 (5) | |
H11A | 0.1896 | 0.9743 | −0.1759 | 0.027* | |
C12 | 0.2966 (3) | 1.0597 (3) | −0.03808 (19) | 0.0200 (5) | |
H12A | 0.3538 | 1.1283 | −0.0578 | 0.024* | |
C13 | 0.3090 (3) | 1.0472 (2) | 0.06107 (19) | 0.0180 (5) | |
C14 | 0.4103 (3) | 1.1339 (2) | 0.14799 (19) | 0.0199 (5) | |
C15 | 0.1105 (3) | 0.5968 (2) | 0.35806 (18) | 0.0182 (5) | |
C16 | 0.3147 (3) | 0.4547 (3) | 0.35453 (19) | 0.0221 (5) | |
H16A | 0.4336 | 0.4783 | 0.3505 | 0.027* | |
H16B | 0.2976 | 0.3599 | 0.3303 | 0.027* | |
C17 | 0.2520 (3) | 0.5040 (3) | 0.4611 (2) | 0.0213 (5) | |
C18 | 0.2037 (4) | 0.4869 (3) | 0.18563 (19) | 0.0279 (6) | |
H18A | 0.2195 | 0.5652 | 0.1617 | 0.042* | |
H18B | 0.0951 | 0.4457 | 0.1627 | 0.042* | |
H18C | 0.2903 | 0.4272 | 0.1580 | 0.042* | |
O1W | −0.0036 (2) | 0.29618 (18) | 0.36045 (14) | 0.0249 (4) | |
H1 | 0.0162 | 0.2166 | 0.3476 | 0.037* | |
H2 | −0.0856 | 0.3008 | 0.3225 | 0.037* | |
O2W | 0.7786 (2) | 0.55028 (19) | 0.10484 (14) | 0.0293 (4) | |
H3 | 0.7269 | 0.4912 | 0.0603 | 0.044* | |
H4 | 0.8232 | 0.6010 | 0.0728 | 0.044* | |
H5 | 0.7115 | 0.5907 | 0.1481 | 0.044* | |
O3W | 0.7461 (3) | 0.3583 (2) | 0.25576 (16) | 0.0362 (5) | |
H6 | 0.6588 | 0.3236 | 0.2235 | 0.054* | |
H7 | 0.7240 | 0.4284 | 0.2983 | 0.054* | |
O4W | 0.3941 (3) | 0.6406 (2) | −0.00313 (15) | 0.0468 (7) | |
H8 | 0.4336 | 0.6891 | −0.0386 | 0.070* | |
H9 | 0.4122 | 0.6782 | 0.0592 | 0.070* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Co1 | 0.02341 (19) | 0.02192 (19) | 0.01396 (17) | 0.00133 (14) | −0.00051 (13) | 0.00646 (13) |
O1 | 0.0280 (10) | 0.0275 (10) | 0.0147 (9) | 0.0058 (8) | 0.0015 (7) | 0.0067 (7) |
O2 | 0.0268 (10) | 0.0296 (10) | 0.0195 (9) | 0.0106 (8) | 0.0029 (8) | 0.0051 (8) |
O3 | 0.0299 (10) | 0.0242 (10) | 0.0208 (9) | 0.0052 (8) | 0.0040 (8) | 0.0027 (8) |
O4 | 0.0289 (10) | 0.0246 (10) | 0.0173 (9) | 0.0063 (8) | 0.0022 (7) | 0.0065 (7) |
O5 | 0.0269 (10) | 0.0249 (10) | 0.0152 (9) | −0.0037 (8) | −0.0011 (7) | 0.0075 (7) |
O6 | 0.0303 (10) | 0.0264 (10) | 0.0168 (9) | −0.0080 (8) | −0.0021 (8) | 0.0048 (8) |
O7 | 0.0279 (10) | 0.0247 (10) | 0.0197 (9) | −0.0077 (8) | −0.0030 (8) | 0.0091 (8) |
O8 | 0.0328 (10) | 0.0253 (10) | 0.0155 (9) | −0.0052 (8) | −0.0017 (8) | 0.0086 (7) |
O9 | 0.0327 (11) | 0.0354 (11) | 0.0201 (9) | 0.0093 (9) | −0.0025 (8) | 0.0100 (8) |
N1 | 0.0173 (10) | 0.0173 (10) | 0.0136 (9) | −0.0022 (8) | 0.0000 (8) | 0.0042 (8) |
N2 | 0.0173 (10) | 0.0195 (11) | 0.0142 (10) | 0.0018 (8) | −0.0002 (8) | 0.0043 (8) |
N3 | 0.0199 (10) | 0.0216 (11) | 0.0133 (10) | 0.0024 (8) | 0.0011 (8) | 0.0050 (8) |
N4 | 0.0224 (11) | 0.0230 (11) | 0.0153 (10) | 0.0054 (9) | −0.0002 (8) | 0.0047 (9) |
N5 | 0.0255 (11) | 0.0262 (12) | 0.0116 (10) | 0.0025 (9) | 0.0010 (8) | 0.0051 (9) |
C1 | 0.0199 (12) | 0.0205 (13) | 0.0150 (11) | −0.0018 (10) | −0.0008 (9) | 0.0033 (10) |
C2 | 0.0167 (12) | 0.0184 (12) | 0.0179 (12) | −0.0009 (9) | 0.0010 (9) | 0.0035 (10) |
C3 | 0.0193 (12) | 0.0214 (13) | 0.0193 (12) | −0.0009 (10) | −0.0028 (10) | 0.0067 (10) |
C4 | 0.0242 (13) | 0.0231 (13) | 0.0141 (11) | −0.0049 (10) | −0.0038 (10) | 0.0067 (10) |
C5 | 0.0227 (13) | 0.0231 (13) | 0.0141 (12) | −0.0035 (10) | 0.0020 (10) | 0.0021 (10) |
C6 | 0.0172 (12) | 0.0178 (12) | 0.0165 (12) | −0.0023 (9) | 0.0003 (9) | 0.0037 (10) |
C7 | 0.0180 (12) | 0.0178 (12) | 0.0219 (12) | 0.0009 (10) | 0.0031 (10) | 0.0062 (10) |
C8 | 0.0210 (12) | 0.0194 (12) | 0.0166 (12) | 0.0011 (10) | 0.0013 (10) | 0.0039 (10) |
C9 | 0.0185 (12) | 0.0175 (12) | 0.0171 (12) | 0.0023 (10) | 0.0020 (9) | 0.0042 (10) |
C10 | 0.0187 (12) | 0.0246 (13) | 0.0155 (12) | 0.0009 (10) | −0.0006 (9) | 0.0028 (10) |
C11 | 0.0250 (13) | 0.0286 (14) | 0.0143 (12) | 0.0030 (11) | 0.0002 (10) | 0.0074 (10) |
C12 | 0.0188 (12) | 0.0238 (13) | 0.0193 (12) | 0.0036 (10) | 0.0032 (10) | 0.0087 (10) |
C13 | 0.0160 (12) | 0.0194 (12) | 0.0201 (12) | 0.0037 (9) | 0.0018 (9) | 0.0074 (10) |
C14 | 0.0180 (12) | 0.0239 (13) | 0.0181 (12) | 0.0014 (10) | 0.0003 (10) | 0.0059 (10) |
C15 | 0.0194 (12) | 0.0185 (12) | 0.0158 (12) | −0.0035 (10) | 0.0001 (9) | 0.0031 (10) |
C16 | 0.0225 (13) | 0.0246 (13) | 0.0195 (12) | 0.0042 (11) | −0.0009 (10) | 0.0056 (10) |
C17 | 0.0197 (12) | 0.0216 (13) | 0.0227 (13) | 0.0003 (10) | −0.0019 (10) | 0.0062 (10) |
C18 | 0.0381 (16) | 0.0293 (15) | 0.0149 (12) | 0.0067 (12) | 0.0010 (11) | 0.0024 (11) |
O1W | 0.0284 (10) | 0.0249 (10) | 0.0216 (9) | 0.0065 (8) | −0.0015 (8) | 0.0052 (8) |
O2W | 0.0354 (11) | 0.0256 (10) | 0.0246 (10) | −0.0025 (9) | 0.0084 (8) | 0.0027 (8) |
O3W | 0.0351 (12) | 0.0370 (12) | 0.0304 (11) | 0.0082 (10) | −0.0113 (9) | −0.0037 (9) |
O4W | 0.0845 (19) | 0.0357 (13) | 0.0170 (10) | −0.0282 (12) | 0.0008 (11) | 0.0061 (9) |
Co1—N1 | 2.029 (2) | C3—H3B | 0.9500 |
Co1—N2 | 2.031 (2) | C4—C5 | 1.390 (4) |
Co1—O8 | 2.1273 (18) | C4—H4A | 0.9500 |
Co1—O4 | 2.1389 (18) | C5—C6 | 1.394 (3) |
Co1—O5 | 2.1904 (18) | C5—H5C | 0.9500 |
Co1—O1 | 2.2239 (19) | C6—C7 | 1.509 (3) |
O1—C1 | 1.273 (3) | C8—C9 | 1.511 (3) |
O2—C1 | 1.245 (3) | C9—C10 | 1.387 (3) |
O3—C7 | 1.233 (3) | C10—C11 | 1.386 (4) |
O4—C7 | 1.283 (3) | C10—H10A | 0.9500 |
O5—C8 | 1.268 (3) | C11—C12 | 1.388 (4) |
O6—C8 | 1.249 (3) | C11—H11A | 0.9500 |
O7—C14 | 1.247 (3) | C12—C13 | 1.392 (3) |
O8—C14 | 1.263 (3) | C12—H12A | 0.9500 |
O9—C17 | 1.215 (3) | C13—C14 | 1.516 (3) |
N1—C6 | 1.325 (3) | C16—C17 | 1.509 (4) |
N1—C2 | 1.338 (3) | C16—H16A | 0.9900 |
N2—C9 | 1.334 (3) | C16—H16B | 0.9900 |
N2—C13 | 1.335 (3) | C18—H18A | 0.9800 |
N3—C15 | 1.370 (3) | C18—H18B | 0.9800 |
N3—C17 | 1.371 (3) | C18—H18C | 0.9800 |
N3—H3A | 0.8800 | O1W—H1 | 0.8500 |
N4—C15 | 1.331 (3) | O1W—H2 | 0.8500 |
N4—C18 | 1.458 (3) | O2W—H3 | 0.8500 |
N4—C16 | 1.459 (3) | O2W—H4 | 0.8500 |
N5—C15 | 1.301 (3) | O2W—H5 | 0.8500 |
N5—H5A | 0.8800 | O3W—H6 | 0.8500 |
N5—H5B | 0.8800 | O3W—H7 | 0.8500 |
C1—C2 | 1.507 (3) | O4W—H8 | 0.8500 |
C2—C3 | 1.391 (3) | O4W—H9 | 0.8500 |
C3—C4 | 1.397 (4) | ||
N1—Co1—N2 | 171.90 (8) | N1—C6—C7 | 113.5 (2) |
N1—Co1—O8 | 104.11 (7) | C5—C6—C7 | 125.5 (2) |
N2—Co1—O8 | 76.44 (7) | O3—C7—O4 | 126.1 (2) |
N1—Co1—O4 | 77.02 (8) | O3—C7—C6 | 118.5 (2) |
N2—Co1—O4 | 111.08 (8) | O4—C7—C6 | 115.4 (2) |
O8—Co1—O4 | 88.59 (7) | O6—C8—O5 | 126.3 (2) |
N1—Co1—O5 | 104.55 (7) | O6—C8—C9 | 117.6 (2) |
N2—Co1—O5 | 75.49 (7) | O5—C8—C9 | 116.1 (2) |
O8—Co1—O5 | 151.26 (7) | N2—C9—C10 | 121.4 (2) |
O4—Co1—O5 | 95.77 (7) | N2—C9—C8 | 112.8 (2) |
N1—Co1—O1 | 75.10 (7) | C10—C9—C8 | 125.8 (2) |
N2—Co1—O1 | 96.82 (7) | C11—C10—C9 | 118.0 (2) |
O8—Co1—O1 | 99.21 (7) | C11—C10—H10A | 121.0 |
O4—Co1—O1 | 152.09 (7) | C9—C10—H10A | 121.0 |
O5—Co1—O1 | 90.12 (7) | C10—C11—C12 | 120.4 (2) |
C1—O1—Co1 | 115.11 (16) | C10—C11—H11A | 119.8 |
C7—O4—Co1 | 114.49 (16) | C12—C11—H11A | 119.8 |
C8—O5—Co1 | 115.09 (16) | C11—C12—C13 | 118.1 (2) |
C14—O8—Co1 | 116.51 (16) | C11—C12—H12A | 121.0 |
C6—N1—C2 | 121.3 (2) | C13—C12—H12A | 121.0 |
C6—N1—Co1 | 118.26 (17) | N2—C13—C12 | 120.9 (2) |
C2—N1—Co1 | 120.43 (16) | N2—C13—C14 | 112.3 (2) |
C9—N2—C13 | 121.1 (2) | C12—C13—C14 | 126.8 (2) |
C9—N2—Co1 | 119.81 (16) | O7—C14—O8 | 125.7 (2) |
C13—N2—Co1 | 118.89 (16) | O7—C14—C13 | 118.6 (2) |
C15—N3—C17 | 110.3 (2) | O8—C14—C13 | 115.6 (2) |
C15—N3—H3A | 124.8 | N5—C15—N4 | 126.3 (2) |
C17—N3—H3A | 124.8 | N5—C15—N3 | 123.3 (2) |
C15—N4—C18 | 125.2 (2) | N4—C15—N3 | 110.4 (2) |
C15—N4—C16 | 110.1 (2) | N4—C16—C17 | 102.3 (2) |
C18—N4—C16 | 123.7 (2) | N4—C16—H16A | 111.3 |
C15—N5—H5A | 120.0 | C17—C16—H16A | 111.3 |
C15—N5—H5B | 120.0 | N4—C16—H16B | 111.3 |
H5A—N5—H5B | 120.0 | C17—C16—H16B | 111.3 |
O2—C1—O1 | 126.4 (2) | H16A—C16—H16B | 109.2 |
O2—C1—C2 | 118.0 (2) | O9—C17—N3 | 125.7 (2) |
O1—C1—C2 | 115.6 (2) | O9—C17—C16 | 127.5 (2) |
N1—C2—C3 | 121.2 (2) | N3—C17—C16 | 106.8 (2) |
N1—C2—C1 | 113.7 (2) | N4—C18—H18A | 109.5 |
C3—C2—C1 | 125.1 (2) | N4—C18—H18B | 109.5 |
C2—C3—C4 | 118.3 (2) | H18A—C18—H18B | 109.5 |
C2—C3—H3B | 120.9 | N4—C18—H18C | 109.5 |
C4—C3—H3B | 120.9 | H18A—C18—H18C | 109.5 |
C5—C4—C3 | 119.4 (2) | H18B—C18—H18C | 109.5 |
C5—C4—H4A | 120.3 | H1—O1W—H2 | 105.5 |
C3—C4—H4A | 120.3 | H3—O2W—H4 | 106.0 |
C4—C5—C6 | 118.7 (2) | H3—O2W—H5 | 110.2 |
C4—C5—H5C | 120.6 | H4—O2W—H5 | 109.9 |
C6—C5—H5C | 120.6 | H6—O3W—H7 | 110.0 |
N1—C6—C5 | 121.0 (2) | H8—O4W—H9 | 108.1 |
N1—Co1—O1—C1 | 2.34 (17) | C2—N1—C6—C5 | −1.7 (4) |
N2—Co1—O1—C1 | −178.09 (18) | Co1—N1—C6—C5 | 179.89 (18) |
O8—Co1—O1—C1 | 104.61 (18) | C2—N1—C6—C7 | 177.0 (2) |
O4—Co1—O1—C1 | 0.0 (3) | Co1—N1—C6—C7 | −1.4 (3) |
O5—Co1—O1—C1 | −102.69 (18) | C4—C5—C6—N1 | 0.7 (4) |
N1—Co1—O4—C7 | 9.68 (17) | C4—C5—C6—C7 | −177.8 (2) |
N2—Co1—O4—C7 | −170.03 (17) | Co1—O4—C7—O3 | 164.3 (2) |
O8—Co1—O4—C7 | −95.15 (17) | Co1—O4—C7—C6 | −13.2 (3) |
O5—Co1—O4—C7 | 113.32 (17) | N1—C6—C7—O3 | −167.8 (2) |
O1—Co1—O4—C7 | 12.1 (3) | C5—C6—C7—O3 | 10.9 (4) |
N1—Co1—O5—C8 | −164.94 (17) | N1—C6—C7—O4 | 10.0 (3) |
N2—Co1—O5—C8 | 6.69 (17) | C5—C6—C7—O4 | −171.4 (2) |
O8—Co1—O5—C8 | 19.4 (3) | Co1—O5—C8—O6 | 177.3 (2) |
O4—Co1—O5—C8 | 117.01 (18) | Co1—O5—C8—C9 | −4.7 (3) |
O1—Co1—O5—C8 | −90.32 (18) | C13—N2—C9—C10 | 1.5 (4) |
N1—Co1—O8—C14 | 172.30 (18) | Co1—N2—C9—C10 | −173.89 (18) |
N2—Co1—O8—C14 | 0.63 (18) | C13—N2—C9—C8 | −176.7 (2) |
O4—Co1—O8—C14 | −111.46 (19) | Co1—N2—C9—C8 | 7.9 (3) |
O5—Co1—O8—C14 | −12.0 (3) | O6—C8—C9—N2 | 176.6 (2) |
O1—Co1—O8—C14 | 95.48 (19) | O5—C8—C9—N2 | −1.6 (3) |
O8—Co1—N1—C6 | 81.22 (18) | O6—C8—C9—C10 | −1.5 (4) |
O4—Co1—N1—C6 | −3.96 (17) | O5—C8—C9—C10 | −179.7 (2) |
O5—Co1—N1—C6 | −96.65 (18) | N2—C9—C10—C11 | −1.1 (4) |
O1—Co1—N1—C6 | 177.18 (19) | C8—C9—C10—C11 | 176.9 (2) |
O8—Co1—N1—C2 | −97.19 (19) | C9—C10—C11—C12 | −0.4 (4) |
O4—Co1—N1—C2 | 177.62 (19) | C10—C11—C12—C13 | 1.3 (4) |
O5—Co1—N1—C2 | 84.94 (19) | C9—N2—C13—C12 | −0.5 (4) |
O1—Co1—N1—C2 | −1.23 (17) | Co1—N2—C13—C12 | 174.95 (18) |
O8—Co1—N2—C9 | 178.3 (2) | C9—N2—C13—C14 | 179.3 (2) |
O4—Co1—N2—C9 | −98.58 (19) | Co1—N2—C13—C14 | −5.2 (3) |
O5—Co1—N2—C9 | −7.92 (18) | C11—C12—C13—N2 | −0.9 (4) |
O1—Co1—N2—C9 | 80.44 (19) | C11—C12—C13—C14 | 179.3 (2) |
O8—Co1—N2—C13 | 2.82 (17) | Co1—O8—C14—O7 | 175.7 (2) |
O4—Co1—N2—C13 | 85.92 (19) | Co1—O8—C14—C13 | −3.5 (3) |
O5—Co1—N2—C13 | 176.59 (19) | N2—C13—C14—O7 | −173.6 (2) |
O1—Co1—N2—C13 | −95.06 (18) | C12—C13—C14—O7 | 6.2 (4) |
Co1—O1—C1—O2 | 176.8 (2) | N2—C13—C14—O8 | 5.6 (3) |
Co1—O1—C1—C2 | −3.0 (3) | C12—C13—C14—O8 | −174.6 (2) |
C6—N1—C2—C3 | 1.2 (4) | C18—N4—C15—N5 | −11.3 (4) |
Co1—N1—C2—C3 | 179.52 (18) | C16—N4—C15—N5 | −179.8 (2) |
C6—N1—C2—C1 | −178.2 (2) | C18—N4—C15—N3 | 168.9 (2) |
Co1—N1—C2—C1 | 0.2 (3) | C16—N4—C15—N3 | 0.4 (3) |
O2—C1—C2—N1 | −177.8 (2) | C17—N3—C15—N5 | 178.5 (2) |
O1—C1—C2—N1 | 2.0 (3) | C17—N3—C15—N4 | −1.7 (3) |
O2—C1—C2—C3 | 2.9 (4) | C15—N4—C16—C17 | 0.9 (3) |
O1—C1—C2—C3 | −177.4 (2) | C18—N4—C16—C17 | −167.8 (2) |
N1—C2—C3—C4 | 0.4 (4) | C15—N3—C17—O9 | −179.0 (3) |
C1—C2—C3—C4 | 179.6 (2) | C15—N3—C17—C16 | 2.2 (3) |
C2—C3—C4—C5 | −1.3 (4) | N4—C16—C17—O9 | 179.4 (3) |
C3—C4—C5—C6 | 0.8 (4) | N4—C16—C17—N3 | −1.8 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3A···O1Wi | 0.88 | 1.86 | 2.716 (3) | 164 |
N5—H5A···O5 | 0.88 | 2.15 | 2.882 (3) | 141 |
N5—H5B···O3ii | 0.88 | 1.96 | 2.764 (3) | 152 |
O1W—H1···O4iii | 0.85 | 1.95 | 2.782 (3) | 166 |
O1W—H2···O3Wiv | 0.85 | 1.85 | 2.673 (3) | 164 |
O2W—H3···O4Wv | 0.85 | 1.70 | 2.522 (3) | 163 |
O2W—H4···O6vi | 0.85 | 1.64 | 2.481 (3) | 170 |
O2W—H5···O2 | 0.85 | 1.71 | 2.537 (3) | 164 |
O3W—H6···O7iii | 0.85 | 1.93 | 2.778 (3) | 172 |
O3W—H7···O9vii | 0.85 | 2.22 | 2.948 (3) | 144 |
O4W—H8···O7viii | 0.85 | 1.84 | 2.680 (3) | 169 |
O4W—H9···O1 | 0.85 | 1.87 | 2.718 (3) | 172 |
C3—H3B···O9vii | 0.95 | 2.37 | 3.301 (3) | 165 |
C4—H4A···O8ix | 0.95 | 2.43 | 3.252 (3) | 145 |
C18—H18C···O7iii | 0.98 | 2.60 | 3.535 (4) | 160 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x, −y+2, −z+1; (iii) x, y−1, z; (iv) x−1, y, z; (v) −x+1, −y+1, −z; (vi) x+1, y, z; (vii) −x+1, −y+1, −z+1; (viii) −x+1, −y+2, −z; (ix) −x+1, −y+2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | (C4H8N3O)(H3O)[Co(C7H3NO4)2]·3H2O |
Mr | 576.34 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 120 |
a, b, c (Å) | 8.0937 (10), 10.7389 (13), 13.5976 (17) |
α, β, γ (°) | 104.811 (2), 90.267 (2), 92.415 (1) |
V (Å3) | 1141.4 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.83 |
Crystal size (mm) | 0.18 × 0.12 × 0.09 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.889, 0.930 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11652, 5488, 4149 |
Rint | 0.025 |
(sin θ/λ)max (Å−1) | 0.661 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.097, 1.02 |
No. of reflections | 5488 |
No. of parameters | 335 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.77, −0.45 |
Computer programs: SMART (Bruker, 2007), SAINT-Plus (Bruker, 2007), SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2006).
Co1—N1 | 2.029 (2) | Co1—O4 | 2.1389 (18) |
Co1—N2 | 2.031 (2) | Co1—O5 | 2.1904 (18) |
Co1—O8 | 2.1273 (18) | Co1—O1 | 2.2239 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3A···O1Wi | 0.88 | 1.859 | 2.716 (3) | 164 |
N5—H5A···O5 | 0.88 | 2.148 | 2.882 (3) | 141 |
N5—H5B···O3ii | 0.88 | 1.956 | 2.764 (3) | 152 |
O1W—H1···O4iii | 0.85 | 1.949 | 2.782 (3) | 166 |
O1W—H2···O3Wiv | 0.85 | 1.845 | 2.673 (3) | 164 |
O2W—H3···O4Wv | 0.85 | 1.697 | 2.522 (3) | 163 |
O2W—H4···O6vi | 0.85 | 1.640 | 2.481 (3) | 170 |
O2W—H5···O2 | 0.85 | 1.710 | 2.537 (3) | 164 |
O3W—H6···O7iii | 0.85 | 1.934 | 2.778 (3) | 172 |
O3W—H7···O9vii | 0.85 | 2.216 | 2.948 (3) | 144 |
O4W—H8···O7viii | 0.85 | 1.840 | 2.680 (3) | 169 |
O4W—H9···O1 | 0.85 | 1.874 | 2.718 (3) | 172 |
C3—H3B···O9vii | 0.95 | 2.37 | 3.301 (3) | 165 |
C4—H4A···O8ix | 0.95 | 2.43 | 3.252 (3) | 145 |
C18—H18C···O7iii | 0.98 | 2.60 | 3.535 (4) | 160 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x, −y+2, −z+1; (iii) x, y−1, z; (iv) x−1, y, z; (v) −x+1, −y+1, −z; (vi) x+1, y, z; (vii) −x+1, −y+1, −z+1; (viii) −x+1, −y+2, −z; (ix) −x+1, −y+2, −z+1. |
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
We have previously reported some compounds containing creatinine (creat), pyridine-2,6-dicarboxylic acid (pydcH2) and various metals, such as (creatH)(pydcH).H2O (Moghimi et al., 2004), (creatH)2[Bi(pydc)2]2.4H2O (Moghimi et al., 2005), (creatH)[Zn(pydc)(pydcH)].4H2O (Aghabozorg, Ramezanipour et al., 2008) and (creatH)[Cr(pydc)2](pydcH2).6H2O (Aghabozorg, Derikvand et al., 2008). For more details and related literature see our recent review article (Aghabozorg, Manteghi et al., 2008).
We describe here the crystal structure of the title compound. The compound contains a [Co(pydc)2]2- anion, a (creatH)+ and a (H3O)+ cation, and three uncoordinated water molecules (Fig. 1). In the anion, the CoII atom is six-coordinated by two N atoms (N1 and N2) and four O atoms (O1, O4, O5 and O8) from the carboxylate groups of two (pydc)2- ligands, with the bond length range of 2.029 (2)–2.2239 (19) Å (Table 1). The N1—Co1—N2 [171.90 (8)°], O8—Co1—O5 [151.26 (7)°] and O4—Co1—O1 [152.09 (7)°] angles show that the four carboxylate groups of the two (pydc)2- ligands orient in a flattened tetrahedral arrangement around the central atom. The coordination environment around CoII is distorted octahedral. The O8—Co1—O4—C7 and O1—Co1—O8—C14 torsion angles are -95.15 (17)° and 95.48 (19)°, respectively, thus it can be concluded that two (pydc)2- ligands are almost perpendicular to each other. The intermolecular forces in the structure could be divided in three main branches, ionic interactions which gather principal anionic complex and counter cation together, X—H···O hydrogen bonds (Fig. 2 and Table 2), where X= O, N, C, and O···π, π–π stacking interactions. The π–π stacking interactions between the pyridyl rings, with centroid–centroid distances of 3.565 (14) and 3.425 (14) Å, and the O···π interaction between the carboxylate O atom and pyridyl ring, with an O···centroid distance of 3.480 (2)Å are observed (Fig. 3). Ion pairing, π–π stacking interactions and extensive intermolecular hydrogen bonds connected the various components into a supramolecular structure.