organic compounds
N,N′,N′′-Tris(2-nitrobenzyl)-2,2′,2′′-nitrilotriethanaminium trichloride 1.41-hydrate
aDEP Facultad de Ciencias Químicas, UANL, Guerrero y Progreso S/N, Col. Treviño, 64570 Monterrey, NL, Mexico
*Correspondence e-mail: sylvain_bernes@Hotmail.com
The title compound, C27H36N7O63+·3Cl−1.41H2O, is the hydrochloride of a tripodal amine, and was structurally characterized because the free base, used as a ligand in podate complexes, is an oily material. In the cation, the secondary amine groups are protonated, and, despite the induced Coulombic repulsions, a claw-like conformation is stabilized, with a cavity approximating C3 Such a topology, with the lone pair of the tertiary N atom placed inside the cavity, allows the encapsulation of guest species. Indeed, three chloride counter-ions balance the charges, one of which is located inside the cation cavity and is strongly bonded to the NH2+ groups. The is completed by two water molecules with occupancies 0.793 (11) and 0.621 (9). The is formed by a complex network of efficient N—H⋯Cl and O—H⋯Cl hydrogen bonds. One nitro group also forms weak contacts with a water molecule.
Related literature
For related tripodal amine structures, see: Hossain et al. (2004); Coyle et al. (2006); McKee et al. (2006); Lakshminarayanan et al. (2007); For the role of electron-withdrawing groups in these molecules, see: Bryantsev & Hay (2005).
Experimental
Crystal data
|
Refinement
|
Data collection: XSCANS (Siemens, 1996); cell XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536809022399/im2103sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809022399/im2103Isup2.hkl
Tris[(2-nitrobenzylideneamino)ethyl]amine (12.461 g, 27 mmol) was dispersed in methanol (40 ml). To achieve selective reduction, an amount of NaBH4 (3.643 g, 96 mmol) was added in small portions at 298 K under stirring. After reduction was completed, solvent was removed and then the reduction product, tris[(2-nitrobenzylamino)ethyl]amine, was extracted with CHCl3 (2 × 10 ml) and water (20 ml). The organic phase was dried over MgSO4. Evaporation of the solvent under reduced pressure afforded the free base as a pale yellow oil (yield: 91%). This compound was dissolved in ethanol and HCl was added until the title white salt [m.p. 503.5–504.5 K (dec.)] had completely precipitated. Suitable single crystals were obtained by evaporation of an ethanol-water (19:1) mixture.
From the IR spectrum of the single-crystal used for X-ray diffraction, it was assumed that an amount of water was present in the sample. Sites for disordered water molecules and chloride ions were inferred from H atoms positions, found in a difference map. Occupancies for water molecules were refined, and converged to 0.79 (1) and 0.621 (9) for O7 and O8. Some O atoms belonging to nitro groups display high displacement parameters, but attempts to resolve disordered sites were unsuccessful. N–bonded H atoms were found in a difference map, confirming the charge of the cation to be +3. All O– and N–bonded H atoms were refined freely, although the geometry was restrained to suitable target values: O—H = 0.85 (1) Å, H···H = 1.34 (2) Å, and N—H = 0.90 (1) Å. Other H atoms were placed in idealized positions and refined as riding to their parent atoms, with bond lengths fixed to 0.97 (methylene) or 0.93 Å (aromatic). Isotropic displacement parameters for H atoms were calculated as Uiso(H) = 1.5 Ueq(carrier atom) for water molecules and Uiso(H) = 1.2 Ueq(carrier atom) otherwise.
Data collection: XSCANS (Siemens, 1996); cell
XSCANS (Siemens, 1996); data reduction: XSCANS (Siemens, 1996); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. The asymmetric unit of (I). Displacement ellipsoids are shown at the 25% probability level. | |
Fig. 2. A part of the crystal structure of (I). Three symmetry-related cations are represented, omitting H atoms not involved in the supramolecular network. Hydrogen bonds are represented by dashed lines, and weak contacts involving nitro groups have been omitted for clarity. Symmetry codes for cations: green x, y, z; gold 3/2 - x, 1/2 + y, 1/2 - z; blue 3/2 - x, -1/2 + y, 1/2 - z. |
C27H36N7O63+·3Cl−·1.41H2O | F(000) = 1441 |
Mr = 686.47 | Dx = 1.371 Mg m−3 |
Monoclinic, P21/n | Melting point: 503.5–504.5 (dec.) K |
Hall symbol: -P 2yn | Mo Kα radiation, λ = 0.71073 Å |
a = 9.131 (2) Å | Cell parameters from 69 reflections |
b = 13.009 (4) Å | θ = 4.6–12.5° |
c = 28.071 (7) Å | µ = 0.33 mm−1 |
β = 94.190 (9)° | T = 298 K |
V = 3326 (2) Å3 | Block, colorless |
Z = 4 | 0.50 × 0.42 × 0.24 mm |
Siemens P4 diffractometer | 4181 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.042 |
Graphite monochromator | θmax = 26.3°, θmin = 2.1° |
2θ/ω scans | h = −11→10 |
Absorption correction: ψ scan (XSCANS; Siemens, 1996) | k = −16→1 |
Tmin = 0.819, Tmax = 0.924 | l = −34→34 |
16115 measured reflections | 3 standard reflections every 97 reflections |
6712 independent reflections | intensity decay: 3.5% |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.056 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.175 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0754P)2 + 1.5076P] where P = (Fo2 + 2Fc2)/3 |
6712 reflections | (Δ/σ)max < 0.001 |
438 parameters | Δρmax = 0.34 e Å−3 |
12 restraints | Δρmin = −0.34 e Å−3 |
0 constraints |
C27H36N7O63+·3Cl−·1.41H2O | V = 3326 (2) Å3 |
Mr = 686.47 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.131 (2) Å | µ = 0.33 mm−1 |
b = 13.009 (4) Å | T = 298 K |
c = 28.071 (7) Å | 0.50 × 0.42 × 0.24 mm |
β = 94.190 (9)° |
Siemens P4 diffractometer | 4181 reflections with I > 2σ(I) |
Absorption correction: ψ scan (XSCANS; Siemens, 1996) | Rint = 0.042 |
Tmin = 0.819, Tmax = 0.924 | 3 standard reflections every 97 reflections |
16115 measured reflections | intensity decay: 3.5% |
6712 independent reflections |
R[F2 > 2σ(F2)] = 0.056 | 12 restraints |
wR(F2) = 0.175 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.34 e Å−3 |
6712 reflections | Δρmin = −0.34 e Å−3 |
438 parameters |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
N1 | 0.9829 (3) | 0.79136 (19) | 0.17125 (9) | 0.0624 (6) | |
C1 | 0.9926 (4) | 0.8169 (3) | 0.22199 (11) | 0.0701 (8) | |
H1A | 0.9977 | 0.8911 | 0.2253 | 0.084* | |
H1B | 1.0831 | 0.7887 | 0.2368 | 0.084* | |
C2 | 0.8671 (4) | 0.7782 (3) | 0.24840 (11) | 0.0690 (8) | |
H2A | 0.8467 | 0.7074 | 0.2393 | 0.083* | |
H2B | 0.8945 | 0.7797 | 0.2824 | 0.083* | |
N2 | 0.7313 (3) | 0.8412 (2) | 0.23819 (8) | 0.0586 (6) | |
H2C | 0.758 (3) | 0.9045 (12) | 0.2481 (11) | 0.070* | |
H2D | 0.706 (3) | 0.844 (2) | 0.2064 (4) | 0.070* | |
C3 | 0.6071 (4) | 0.7981 (2) | 0.26312 (11) | 0.0668 (8) | |
H3A | 0.6416 | 0.7807 | 0.2956 | 0.080* | |
H3B | 0.5740 | 0.7352 | 0.2472 | 0.080* | |
C4 | 0.4792 (3) | 0.8706 (2) | 0.26437 (10) | 0.0588 (7) | |
C5 | 0.4586 (4) | 0.9520 (2) | 0.23318 (11) | 0.0682 (8) | |
H5A | 0.5256 | 0.9624 | 0.2102 | 0.082* | |
C6 | 0.3408 (4) | 1.0185 (3) | 0.23509 (13) | 0.0733 (9) | |
H6A | 0.3284 | 1.0714 | 0.2129 | 0.088* | |
C7 | 0.2432 (4) | 1.0077 (3) | 0.26895 (13) | 0.0736 (9) | |
H7A | 0.1651 | 1.0533 | 0.2702 | 0.088* | |
C8 | 0.2608 (4) | 0.9293 (3) | 0.30119 (12) | 0.0725 (9) | |
H8A | 0.1957 | 0.9216 | 0.3249 | 0.087* | |
C9 | 0.3756 (4) | 0.8620 (2) | 0.29820 (10) | 0.0623 (8) | |
N3 | 0.3838 (4) | 0.7755 (3) | 0.33158 (12) | 0.0856 (9) | |
O1 | 0.3524 (4) | 0.7895 (3) | 0.37214 (12) | 0.1437 (14) | |
O2 | 0.4250 (4) | 0.6941 (2) | 0.31824 (11) | 0.1107 (10) | |
C11 | 1.0831 (4) | 0.8554 (3) | 0.14559 (14) | 0.0763 (9) | |
H11A | 1.0975 | 0.8234 | 0.1151 | 0.092* | |
H11B | 1.1777 | 0.8573 | 0.1637 | 0.092* | |
C12 | 1.0314 (4) | 0.9638 (3) | 0.13682 (15) | 0.0869 (11) | |
H12A | 1.0114 | 0.9950 | 0.1670 | 0.104* | |
H12B | 1.1091 | 1.0030 | 0.1235 | 0.104* | |
N12 | 0.8964 (3) | 0.9694 (2) | 0.10352 (11) | 0.0709 (7) | |
H12C | 0.907 (4) | 0.923 (2) | 0.0803 (9) | 0.085* | |
H12D | 0.825 (3) | 0.943 (3) | 0.1206 (11) | 0.085* | |
C13 | 0.8715 (4) | 1.0771 (3) | 0.08618 (13) | 0.0800 (10) | |
H13A | 0.9484 | 1.0955 | 0.0657 | 0.096* | |
H13B | 0.8785 | 1.1233 | 0.1134 | 0.096* | |
C14 | 0.7249 (4) | 1.0919 (2) | 0.05908 (11) | 0.0671 (8) | |
C15 | 0.7256 (4) | 1.0997 (3) | 0.01013 (12) | 0.0784 (10) | |
H15A | 0.8139 | 1.0911 | −0.0039 | 0.094* | |
C16 | 0.6024 (6) | 1.1193 (3) | −0.01819 (15) | 0.0926 (12) | |
H16A | 0.6072 | 1.1236 | −0.0511 | 0.111* | |
C17 | 0.4729 (5) | 1.1328 (3) | 0.00097 (16) | 0.0919 (12) | |
H17A | 0.3891 | 1.1470 | −0.0188 | 0.110* | |
C18 | 0.4635 (4) | 1.1258 (3) | 0.04915 (17) | 0.0858 (11) | |
H18A | 0.3737 | 1.1342 | 0.0623 | 0.103* | |
C19 | 0.5905 (4) | 1.1060 (2) | 0.07840 (12) | 0.0712 (9) | |
N13 | 0.5780 (6) | 1.1031 (2) | 0.12976 (14) | 0.0969 (11) | |
O3 | 0.4647 (6) | 1.1270 (4) | 0.14496 (16) | 0.1638 (18) | |
O4 | 0.6834 (5) | 1.0783 (2) | 0.15623 (10) | 0.1092 (10) | |
C21 | 1.0212 (4) | 0.6829 (2) | 0.16548 (11) | 0.0679 (8) | |
H21A | 0.9807 | 0.6430 | 0.1906 | 0.081* | |
H21B | 1.1272 | 0.6756 | 0.1689 | 0.081* | |
C22 | 0.9657 (4) | 0.6407 (3) | 0.11834 (13) | 0.0758 (9) | |
H22A | 0.9985 | 0.6840 | 0.0931 | 0.091* | |
H22B | 1.0057 | 0.5724 | 0.1144 | 0.091* | |
N22 | 0.8036 (3) | 0.63543 (19) | 0.11434 (9) | 0.0648 (7) | |
H22C | 0.774 (4) | 0.596 (2) | 0.1381 (9) | 0.078* | |
H22D | 0.756 (3) | 0.6949 (15) | 0.1190 (12) | 0.078* | |
C23 | 0.7439 (4) | 0.5962 (3) | 0.06626 (11) | 0.0769 (10) | |
H23A | 0.7383 | 0.6529 | 0.0437 | 0.092* | |
H23B | 0.8114 | 0.5457 | 0.0549 | 0.092* | |
C24 | 0.5961 (5) | 0.5488 (3) | 0.06750 (11) | 0.0737 (9) | |
C25 | 0.4793 (6) | 0.6015 (4) | 0.04688 (14) | 0.0959 (12) | |
H25A | 0.4936 | 0.6668 | 0.0345 | 0.115* | |
C26 | 0.3370 (7) | 0.5587 (6) | 0.04397 (18) | 0.1311 (19) | |
H26A | 0.2571 | 0.5950 | 0.0301 | 0.157* | |
C27 | 0.3195 (8) | 0.4606 (7) | 0.0625 (2) | 0.138 (3) | |
H27A | 0.2270 | 0.4303 | 0.0608 | 0.166* | |
C28 | 0.4359 (10) | 0.4094 (5) | 0.0827 (2) | 0.140 (3) | |
H28A | 0.4229 | 0.3436 | 0.0946 | 0.168* | |
C29 | 0.5702 (6) | 0.4512 (3) | 0.08602 (12) | 0.0939 (13) | |
N23 | 0.6930 (7) | 0.3884 (2) | 0.10924 (12) | 0.1083 (15) | |
O5 | 0.6572 (7) | 0.3081 (3) | 0.12602 (13) | 0.205 (3) | |
O6 | 0.8142 (6) | 0.4235 (3) | 0.11446 (16) | 0.1383 (14) | |
Cl1 | 0.61515 (8) | 0.83642 (6) | 0.12955 (2) | 0.0618 (2) | |
Cl2 | 0.66871 (10) | 0.53719 (6) | 0.20643 (3) | 0.0696 (2) | |
Cl3 | 0.91772 (12) | 0.82403 (9) | 0.01891 (4) | 0.0971 (3) | |
O7 | 1.0384 (7) | 0.6272 (5) | −0.0268 (2) | 0.166 (3) | 0.793 (11) |
H71 | 1.046 (14) | 0.658 (7) | −0.0533 (19) | 0.249* | 0.793 (11) |
H72 | 1.006 (12) | 0.673 (5) | −0.009 (3) | 0.249* | 0.793 (11) |
O8 | 0.3919 (5) | 0.6773 (5) | 0.1646 (2) | 0.121 (3) | 0.621 (9) |
H81 | 0.426 (9) | 0.723 (5) | 0.147 (3) | 0.182* | 0.621 (9) |
H82 | 0.461 (7) | 0.633 (6) | 0.168 (4) | 0.182* | 0.621 (9) |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0575 (14) | 0.0559 (14) | 0.0721 (15) | 0.0051 (12) | −0.0083 (12) | −0.0021 (12) |
C1 | 0.0607 (19) | 0.0697 (19) | 0.077 (2) | 0.0053 (16) | −0.0152 (16) | −0.0118 (16) |
C2 | 0.070 (2) | 0.071 (2) | 0.0636 (18) | 0.0112 (17) | −0.0087 (15) | −0.0050 (15) |
N2 | 0.0642 (15) | 0.0621 (14) | 0.0480 (12) | 0.0035 (12) | −0.0052 (11) | −0.0073 (11) |
C3 | 0.076 (2) | 0.0637 (18) | 0.0605 (17) | 0.0026 (16) | 0.0023 (15) | 0.0007 (14) |
C4 | 0.0616 (18) | 0.0628 (17) | 0.0509 (15) | −0.0004 (14) | −0.0026 (13) | −0.0095 (13) |
C5 | 0.072 (2) | 0.0675 (19) | 0.0659 (18) | 0.0044 (17) | 0.0064 (15) | 0.0024 (15) |
C6 | 0.073 (2) | 0.0644 (19) | 0.081 (2) | 0.0048 (17) | −0.0035 (18) | 0.0015 (16) |
C7 | 0.0618 (19) | 0.073 (2) | 0.084 (2) | 0.0042 (17) | −0.0072 (18) | −0.0149 (18) |
C8 | 0.0571 (19) | 0.088 (2) | 0.073 (2) | −0.0054 (18) | 0.0035 (15) | −0.0145 (18) |
C9 | 0.0652 (19) | 0.0674 (18) | 0.0530 (16) | −0.0069 (16) | −0.0055 (14) | −0.0046 (14) |
N3 | 0.087 (2) | 0.096 (2) | 0.075 (2) | 0.0044 (19) | 0.0149 (16) | 0.0109 (18) |
O1 | 0.163 (3) | 0.182 (4) | 0.091 (2) | 0.048 (3) | 0.042 (2) | 0.042 (2) |
O2 | 0.139 (3) | 0.0850 (19) | 0.109 (2) | 0.0062 (19) | 0.0188 (19) | 0.0254 (17) |
C11 | 0.060 (2) | 0.075 (2) | 0.092 (2) | −0.0038 (17) | −0.0063 (17) | 0.0100 (18) |
C12 | 0.078 (2) | 0.072 (2) | 0.105 (3) | −0.0145 (18) | −0.030 (2) | 0.0173 (19) |
N12 | 0.0734 (18) | 0.0586 (16) | 0.0781 (19) | −0.0116 (14) | −0.0118 (15) | 0.0082 (13) |
C13 | 0.085 (2) | 0.066 (2) | 0.084 (2) | −0.0186 (18) | −0.0207 (18) | 0.0212 (17) |
C14 | 0.077 (2) | 0.0526 (17) | 0.0688 (19) | −0.0149 (16) | −0.0133 (16) | 0.0096 (14) |
C15 | 0.087 (2) | 0.076 (2) | 0.071 (2) | −0.0080 (19) | −0.0006 (18) | 0.0149 (17) |
C16 | 0.115 (4) | 0.082 (3) | 0.077 (2) | −0.007 (2) | −0.020 (2) | 0.0171 (19) |
C17 | 0.099 (3) | 0.070 (2) | 0.101 (3) | −0.009 (2) | −0.035 (3) | 0.016 (2) |
C18 | 0.078 (2) | 0.0571 (19) | 0.123 (3) | −0.0040 (18) | 0.007 (2) | 0.013 (2) |
C19 | 0.095 (3) | 0.0479 (16) | 0.0705 (19) | −0.0080 (16) | 0.0032 (18) | 0.0081 (14) |
N13 | 0.143 (4) | 0.0622 (18) | 0.088 (2) | −0.004 (2) | 0.030 (3) | 0.0144 (17) |
O3 | 0.183 (4) | 0.170 (4) | 0.150 (3) | 0.037 (3) | 0.090 (3) | 0.048 (3) |
O4 | 0.182 (3) | 0.0783 (18) | 0.0662 (16) | −0.005 (2) | −0.0007 (18) | 0.0081 (13) |
C21 | 0.0662 (19) | 0.0653 (19) | 0.0718 (19) | 0.0132 (16) | 0.0023 (15) | 0.0041 (15) |
C22 | 0.080 (2) | 0.067 (2) | 0.082 (2) | 0.0100 (17) | 0.0165 (18) | −0.0071 (17) |
N22 | 0.088 (2) | 0.0529 (14) | 0.0541 (14) | 0.0044 (13) | 0.0074 (13) | −0.0057 (11) |
C23 | 0.110 (3) | 0.066 (2) | 0.0553 (17) | −0.0139 (19) | 0.0089 (17) | −0.0046 (15) |
C24 | 0.110 (3) | 0.0599 (18) | 0.0524 (17) | −0.0175 (19) | 0.0113 (18) | −0.0092 (14) |
C25 | 0.123 (4) | 0.096 (3) | 0.068 (2) | −0.014 (3) | 0.001 (2) | −0.013 (2) |
C26 | 0.125 (5) | 0.181 (6) | 0.086 (3) | −0.011 (4) | −0.003 (3) | −0.042 (4) |
C27 | 0.138 (5) | 0.185 (7) | 0.098 (4) | −0.088 (5) | 0.044 (4) | −0.053 (4) |
C28 | 0.207 (7) | 0.133 (5) | 0.087 (3) | −0.087 (5) | 0.055 (4) | −0.043 (3) |
C29 | 0.152 (4) | 0.077 (2) | 0.0545 (19) | −0.039 (3) | 0.022 (2) | −0.0207 (18) |
N23 | 0.213 (5) | 0.0461 (18) | 0.0650 (18) | −0.013 (3) | 0.006 (3) | −0.0040 (14) |
O5 | 0.416 (8) | 0.075 (2) | 0.113 (3) | −0.073 (3) | −0.056 (4) | 0.0271 (19) |
O6 | 0.187 (4) | 0.079 (2) | 0.151 (3) | 0.034 (3) | 0.029 (3) | 0.007 (2) |
Cl1 | 0.0686 (5) | 0.0594 (4) | 0.0555 (4) | 0.0021 (4) | −0.0085 (3) | 0.0005 (3) |
Cl2 | 0.0815 (5) | 0.0606 (4) | 0.0665 (5) | 0.0027 (4) | 0.0050 (4) | 0.0078 (3) |
Cl3 | 0.1002 (7) | 0.1081 (8) | 0.0858 (6) | −0.0133 (6) | 0.0264 (5) | 0.0007 (5) |
O7 | 0.139 (5) | 0.212 (6) | 0.145 (5) | 0.047 (4) | 0.003 (4) | −0.046 (4) |
O8 | 0.077 (3) | 0.125 (5) | 0.163 (5) | −0.006 (3) | 0.025 (3) | 0.052 (4) |
N1—C1 | 1.459 (4) | C14—C19 | 1.389 (5) |
N1—C11 | 1.465 (4) | C15—C16 | 1.354 (5) |
N1—C21 | 1.466 (4) | C15—H15A | 0.9300 |
C1—C2 | 1.497 (5) | C16—C17 | 1.346 (6) |
C1—H1A | 0.9700 | C16—H16A | 0.9300 |
C1—H1B | 0.9700 | C17—C18 | 1.364 (6) |
C2—N2 | 1.497 (4) | C17—H17A | 0.9300 |
C2—H2A | 0.9700 | C18—C19 | 1.396 (5) |
C2—H2B | 0.9700 | C18—H18A | 0.9300 |
N2—C3 | 1.485 (4) | C19—N13 | 1.455 (5) |
N2—H2C | 0.897 (10) | N13—O3 | 1.190 (5) |
N2—H2D | 0.906 (10) | N13—O4 | 1.216 (5) |
C3—C4 | 1.504 (4) | C21—C22 | 1.487 (5) |
C3—H3A | 0.9700 | C21—H21A | 0.9700 |
C3—H3B | 0.9700 | C21—H21B | 0.9700 |
C4—C5 | 1.378 (4) | C22—N22 | 1.478 (5) |
C4—C9 | 1.393 (4) | C22—H22A | 0.9700 |
C5—C6 | 1.385 (5) | C22—H22B | 0.9700 |
C5—H5A | 0.9300 | N22—C23 | 1.507 (4) |
C6—C7 | 1.357 (5) | N22—H22C | 0.899 (10) |
C6—H6A | 0.9300 | N22—H22D | 0.900 (10) |
C7—C8 | 1.365 (5) | C23—C24 | 1.487 (5) |
C7—H7A | 0.9300 | C23—H23A | 0.9700 |
C8—C9 | 1.372 (5) | C23—H23B | 0.9700 |
C8—H8A | 0.9300 | C24—C25 | 1.361 (6) |
C9—N3 | 1.463 (4) | C24—C29 | 1.398 (5) |
N3—O2 | 1.193 (4) | C25—C26 | 1.411 (7) |
N3—O1 | 1.208 (4) | C25—H25A | 0.9300 |
C11—C12 | 1.501 (5) | C26—C27 | 1.391 (9) |
C11—H11A | 0.9700 | C26—H26A | 0.9300 |
C11—H11B | 0.9700 | C27—C28 | 1.345 (9) |
C12—N12 | 1.493 (4) | C27—H27A | 0.9300 |
C12—H12A | 0.9700 | C28—C29 | 1.338 (8) |
C12—H12B | 0.9700 | C28—H28A | 0.9300 |
N12—C13 | 1.495 (4) | C29—N23 | 1.498 (7) |
N12—H12C | 0.897 (10) | N23—O6 | 1.196 (6) |
N12—H12D | 0.902 (10) | N23—O5 | 1.202 (5) |
C13—C14 | 1.503 (5) | O7—H71 | 0.851 (10) |
C13—H13A | 0.9700 | O7—H72 | 0.851 (10) |
C13—H13B | 0.9700 | O8—H81 | 0.850 (10) |
C14—C15 | 1.378 (5) | O8—H82 | 0.850 (10) |
C1—N1—C11 | 110.8 (3) | C14—C13—H13B | 108.9 |
C1—N1—C21 | 109.2 (2) | H13A—C13—H13B | 107.8 |
C11—N1—C21 | 109.3 (3) | C15—C14—C19 | 116.6 (3) |
N1—C1—C2 | 114.4 (3) | C15—C14—C13 | 116.4 (3) |
N1—C1—H1A | 108.7 | C19—C14—C13 | 126.8 (3) |
C2—C1—H1A | 108.7 | C16—C15—C14 | 122.3 (4) |
N1—C1—H1B | 108.7 | C16—C15—H15A | 118.8 |
C2—C1—H1B | 108.7 | C14—C15—H15A | 118.8 |
H1A—C1—H1B | 107.6 | C17—C16—C15 | 120.5 (4) |
N2—C2—C1 | 112.0 (3) | C17—C16—H16A | 119.8 |
N2—C2—H2A | 109.2 | C15—C16—H16A | 119.8 |
C1—C2—H2A | 109.2 | C16—C17—C18 | 120.5 (4) |
N2—C2—H2B | 109.2 | C16—C17—H17A | 119.7 |
C1—C2—H2B | 109.2 | C18—C17—H17A | 119.7 |
H2A—C2—H2B | 107.9 | C17—C18—C19 | 119.1 (4) |
C3—N2—C2 | 110.7 (2) | C17—C18—H18A | 120.5 |
C3—N2—H2C | 114 (2) | C19—C18—H18A | 120.5 |
C2—N2—H2C | 104 (2) | C14—C19—C18 | 121.0 (3) |
C3—N2—H2D | 109 (2) | C14—C19—N13 | 121.3 (4) |
C2—N2—H2D | 111 (2) | C18—C19—N13 | 117.8 (4) |
H2C—N2—H2D | 109 (3) | O3—N13—O4 | 121.4 (4) |
N2—C3—C4 | 113.3 (3) | O3—N13—C19 | 118.8 (5) |
N2—C3—H3A | 108.9 | O4—N13—C19 | 119.8 (4) |
C4—C3—H3A | 108.9 | N1—C21—C22 | 112.6 (3) |
N2—C3—H3B | 108.9 | N1—C21—H21A | 109.1 |
C4—C3—H3B | 108.9 | C22—C21—H21A | 109.1 |
H3A—C3—H3B | 107.7 | N1—C21—H21B | 109.1 |
C5—C4—C9 | 115.3 (3) | C22—C21—H21B | 109.1 |
C5—C4—C3 | 122.5 (3) | H21A—C21—H21B | 107.8 |
C9—C4—C3 | 122.2 (3) | N22—C22—C21 | 111.1 (3) |
C4—C5—C6 | 121.7 (3) | N22—C22—H22A | 109.4 |
C4—C5—H5A | 119.1 | C21—C22—H22A | 109.4 |
C6—C5—H5A | 119.1 | N22—C22—H22B | 109.4 |
C7—C6—C5 | 120.9 (3) | C21—C22—H22B | 109.4 |
C7—C6—H6A | 119.5 | H22A—C22—H22B | 108.0 |
C5—C6—H6A | 119.5 | C22—N22—C23 | 112.2 (3) |
C6—C7—C8 | 119.4 (3) | C22—N22—H22C | 109 (2) |
C6—C7—H7A | 120.3 | C23—N22—H22C | 111 (2) |
C8—C7—H7A | 120.3 | C22—N22—H22D | 116 (2) |
C7—C8—C9 | 119.3 (3) | C23—N22—H22D | 106 (2) |
C7—C8—H8A | 120.4 | H22C—N22—H22D | 102 (3) |
C9—C8—H8A | 120.4 | C24—C23—N22 | 112.9 (3) |
C8—C9—C4 | 123.4 (3) | C24—C23—H23A | 109.0 |
C8—C9—N3 | 117.1 (3) | N22—C23—H23A | 109.0 |
C4—C9—N3 | 119.5 (3) | C24—C23—H23B | 109.0 |
O2—N3—O1 | 122.1 (4) | N22—C23—H23B | 109.0 |
O2—N3—C9 | 119.0 (3) | H23A—C23—H23B | 107.8 |
O1—N3—C9 | 118.9 (4) | C25—C24—C29 | 117.9 (4) |
N1—C11—C12 | 114.5 (3) | C25—C24—C23 | 117.7 (3) |
N1—C11—H11A | 108.6 | C29—C24—C23 | 124.4 (4) |
C12—C11—H11A | 108.6 | C24—C25—C26 | 121.0 (5) |
N1—C11—H11B | 108.6 | C24—C25—H25A | 119.5 |
C12—C11—H11B | 108.6 | C26—C25—H25A | 119.5 |
H11A—C11—H11B | 107.6 | C27—C26—C25 | 118.1 (6) |
N12—C12—C11 | 112.6 (3) | C27—C26—H26A | 121.0 |
N12—C12—H12A | 109.1 | C25—C26—H26A | 121.0 |
C11—C12—H12A | 109.1 | C28—C27—C26 | 120.2 (6) |
N12—C12—H12B | 109.1 | C28—C27—H27A | 119.9 |
C11—C12—H12B | 109.1 | C26—C27—H27A | 119.9 |
H12A—C12—H12B | 107.8 | C29—C28—C27 | 121.3 (6) |
C12—N12—C13 | 110.5 (2) | C29—C28—H28A | 119.4 |
C12—N12—H12C | 107 (2) | C27—C28—H28A | 119.4 |
C13—N12—H12C | 114 (2) | C28—C29—C24 | 121.5 (6) |
C12—N12—H12D | 104 (2) | C28—C29—N23 | 117.5 (5) |
C13—N12—H12D | 115 (2) | C24—C29—N23 | 121.0 (4) |
H12C—N12—H12D | 104 (3) | O6—N23—O5 | 124.0 (6) |
N12—C13—C14 | 113.2 (3) | O6—N23—C29 | 120.1 (4) |
N12—C13—H13A | 108.9 | O5—N23—C29 | 115.4 (6) |
C14—C13—H13A | 108.9 | H71—O7—H72 | 104 (3) |
N12—C13—H13B | 108.9 | H81—O8—H82 | 104 (3) |
C11—N1—C1—C2 | 163.5 (3) | C16—C17—C18—C19 | 0.9 (6) |
C21—N1—C1—C2 | −76.1 (3) | C15—C14—C19—C18 | 0.7 (5) |
N1—C1—C2—N2 | −75.8 (3) | C13—C14—C19—C18 | 175.6 (3) |
C1—C2—N2—C3 | 177.4 (2) | C15—C14—C19—N13 | −177.8 (3) |
C2—N2—C3—C4 | 165.9 (2) | C13—C14—C19—N13 | −2.9 (5) |
N2—C3—C4—C5 | 19.9 (4) | C17—C18—C19—C14 | −1.0 (5) |
N2—C3—C4—C9 | −158.0 (3) | C17—C18—C19—N13 | 177.6 (3) |
C9—C4—C5—C6 | −1.4 (4) | C14—C19—N13—O3 | 171.6 (4) |
C3—C4—C5—C6 | −179.5 (3) | C18—C19—N13—O3 | −6.9 (5) |
C4—C5—C6—C7 | 2.0 (5) | C14—C19—N13—O4 | −7.1 (5) |
C5—C6—C7—C8 | −0.8 (5) | C18—C19—N13—O4 | 174.3 (3) |
C6—C7—C8—C9 | −1.0 (5) | C1—N1—C21—C22 | 159.9 (3) |
C7—C8—C9—C4 | 1.7 (5) | C11—N1—C21—C22 | −78.8 (3) |
C7—C8—C9—N3 | −176.1 (3) | N1—C21—C22—N22 | −67.4 (4) |
C5—C4—C9—C8 | −0.5 (4) | C21—C22—N22—C23 | 178.1 (3) |
C3—C4—C9—C8 | 177.6 (3) | C22—N22—C23—C24 | 155.5 (3) |
C5—C4—C9—N3 | 177.2 (3) | N22—C23—C24—C25 | 107.9 (4) |
C3—C4—C9—N3 | −4.7 (4) | N22—C23—C24—C29 | −75.9 (4) |
C8—C9—N3—O2 | 143.3 (4) | C29—C24—C25—C26 | −0.5 (5) |
C4—C9—N3—O2 | −34.6 (5) | C23—C24—C25—C26 | 176.0 (3) |
C8—C9—N3—O1 | −38.7 (5) | C24—C25—C26—C27 | −0.5 (6) |
C4—C9—N3—O1 | 143.5 (4) | C25—C26—C27—C28 | 0.4 (8) |
C1—N1—C11—C12 | −76.1 (3) | C26—C27—C28—C29 | 0.6 (8) |
C21—N1—C11—C12 | 163.6 (3) | C27—C28—C29—C24 | −1.7 (7) |
N1—C11—C12—N12 | −66.1 (4) | C27—C28—C29—N23 | 179.9 (5) |
C11—C12—N12—C13 | −165.5 (3) | C25—C24—C29—C28 | 1.6 (5) |
C12—N12—C13—C14 | −170.5 (3) | C23—C24—C29—C28 | −174.6 (4) |
N12—C13—C14—C15 | −104.5 (4) | C25—C24—C29—N23 | 180.0 (3) |
N12—C13—C14—C19 | 80.5 (4) | C23—C24—C29—N23 | 3.8 (5) |
C19—C14—C15—C16 | −0.4 (5) | C28—C29—N23—O6 | −177.6 (4) |
C13—C14—C15—C16 | −175.9 (3) | C24—C29—N23—O6 | 3.9 (6) |
C14—C15—C16—C17 | 0.4 (6) | C28—C29—N23—O5 | −5.1 (5) |
C15—C16—C17—C18 | −0.6 (6) | C24—C29—N23—O5 | 176.4 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2D···Cl1 | 0.91 (1) | 2.26 (1) | 3.155 (2) | 172 (3) |
N12—H12D···Cl1 | 0.90 (1) | 2.40 (2) | 3.225 (3) | 153 (3) |
N22—H22D···Cl1 | 0.90 (1) | 2.28 (1) | 3.176 (3) | 174 (3) |
N12—H12C···Cl3 | 0.90 (1) | 2.16 (1) | 3.054 (3) | 174 (3) |
N22—H22C···Cl2 | 0.90 (1) | 2.34 (1) | 3.209 (3) | 164 (3) |
O8—H81···Cl1 | 0.85 (1) | 2.35 (5) | 3.115 (5) | 150 (9) |
O8—H82···Cl2 | 0.85 (1) | 2.46 (4) | 3.265 (5) | 159 (10) |
O7—H72···Cl3 | 0.85 (1) | 2.28 (3) | 3.102 (6) | 163 (9) |
N2—H2C···Cl2i | 0.90 (1) | 2.22 (1) | 3.089 (3) | 163 (3) |
O7—H71···O6ii | 0.85 (1) | 2.45 (8) | 2.965 (7) | 119 (8) |
Symmetry codes: (i) −x+3/2, y+1/2, −z+1/2; (ii) −x+2, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C27H36N7O63+·3Cl−·1.41H2O |
Mr | 686.47 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 298 |
a, b, c (Å) | 9.131 (2), 13.009 (4), 28.071 (7) |
β (°) | 94.190 (9) |
V (Å3) | 3326 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.33 |
Crystal size (mm) | 0.50 × 0.42 × 0.24 |
Data collection | |
Diffractometer | Siemens P4 diffractometer |
Absorption correction | ψ scan (XSCANS; Siemens, 1996) |
Tmin, Tmax | 0.819, 0.924 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16115, 6712, 4181 |
Rint | 0.042 |
(sin θ/λ)max (Å−1) | 0.622 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.056, 0.175, 1.03 |
No. of reflections | 6712 |
No. of parameters | 438 |
No. of restraints | 12 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.34, −0.34 |
Computer programs: XSCANS (Siemens, 1996), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2006).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2D···Cl1 | 0.906 (10) | 2.255 (11) | 3.155 (2) | 172 (3) |
N12—H12D···Cl1 | 0.902 (10) | 2.396 (19) | 3.225 (3) | 153 (3) |
N22—H22D···Cl1 | 0.900 (10) | 2.279 (11) | 3.176 (3) | 174 (3) |
N12—H12C···Cl3 | 0.897 (10) | 2.161 (11) | 3.054 (3) | 174 (3) |
N22—H22C···Cl2 | 0.899 (10) | 2.335 (14) | 3.209 (3) | 164 (3) |
O8—H81···Cl1 | 0.850 (10) | 2.35 (5) | 3.115 (5) | 150 (9) |
O8—H82···Cl2 | 0.850 (10) | 2.46 (4) | 3.265 (5) | 159 (10) |
O7—H72···Cl3 | 0.851 (10) | 2.28 (3) | 3.102 (6) | 163 (9) |
N2—H2C···Cl2i | 0.897 (10) | 2.221 (14) | 3.089 (3) | 163 (3) |
O7—H71···O6ii | 0.851 (10) | 2.45 (8) | 2.965 (7) | 119 (8) |
Symmetry codes: (i) −x+3/2, y+1/2, −z+1/2; (ii) −x+2, −y+1, −z. |
Acknowledgements
We are grateful to Dr Amparo Salmerón Valverde (BUAP, Mexico) for measuring the IR spectrum of the title salt. The authors acknowledge the Facultad de Ciencias Químicas (UANL, Mexico) and PAYCyT for financial support (project CA1260–06).
References
Bryantsev, V. S. & Hay, B. P. (2005). Org. Lett. 7, 5031–5034. Web of Science CrossRef PubMed CAS Google Scholar
Coyle, J. L., Fuller, A., McKee, V. & Nelson, J. (2006). Acta Cryst. C62, m472–m476. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Hossain, Md. A., Liljegren, J. A., Powell, D. & Bowman-James, K. (2004). Inorg. Chem. 43, 3751–3755. CSD CrossRef PubMed CAS Google Scholar
Lakshminarayanan, P. S., Ravikumar, I., Suresh, E. & Ghosh, P. (2007). Inorg. Chem. 46, 4769–4771. Web of Science CSD CrossRef PubMed CAS Google Scholar
Macrae, C. F., Edgington, P. R., McCabe, P., Pidcock, E., Shields, G. P., Taylor, R., Towler, M. & van de Streek, J. (2006). J. Appl. Cryst. 39, 453–457. Web of Science CrossRef CAS IUCr Journals Google Scholar
McKee, V., Morgan, G. G. & Nelson, J. (2006). Acta Cryst. E62, o3747–o3749. Web of Science CSD CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Siemens (1996). XSCANS. Version 2.31. Siemens Analytical X-ray Instruments Inc., Madison, Wisconsin, USA. Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Tris(2-aminoethyl)amine (tren) derivatives are common starting materials for the synthesis of tripodal ligands used as podants in coordination chemistry (Coyle et al., 2006). They are also used as anions receptors aiming at the design of molecules acting as selective anion bindig sites (Hossain et al., 2004). On the other hand, for tren-based molecules bearing an aryl group, it has been shown that substitution of aryl with electron withdrawing groups enhances the stability of anions complexes (Bryantsev & Hay, 2005). Following this idea, we prepared tris[(2-nitrobenzylamino)ethyl]amine by reduction of the corresponding Schiff base, tris[(2-nitrobenzylideneamino)ethyl]amine, which had been previously characterized by X-ray diffraction (McKee et al., 2006). However, as the free base is an oil, we transformed the amine into its hydrochloride salt, (I), and now report its X-ray structure.
The asymmetric unit (Fig. 1) contains one cation and three chloride ions balancing the charges, as expected. Two sites are occupied by water molecules, for which occupancies converged to 0.79 (11) and 0.621 (9). All atoms are placed in general positions. The presence of lattice water molecules is confirmed by IR spectroscopy, as well as by the consistent network of hydrogen bonds involving all H atoms of water molecules. The three secondary amine groups of the tren derivative are protonated, generating strong Coulombic repulsions within the cation. However, a claw-like conformation is stabilized, since a Cl- ion is placed inside the cavity and forms three strong hydrogen bonds with all NH2+ groups. Such a behaviour is not systematically observed with closely related cations. For example, tris(2-benzylammonioethyl)amine cation has been crystallized with bromide or phosphate, and X-ray studies revealed that in both cases cations approximate a trigonal planar shape (Hossain et al., 2004). In the same way, the free Schiff base used as starting material for (I) is a planar molecule with crystallographic C3 symmetry (space group R3, McKee et al., 2006). In contrast, the same cation including pentafluorobenzyl groups in place of benzyl encapsulates Cl- or Br- ions (Lakshminarayanan et al., 2007), as (I) does.
The supramolecular network formed by cations, anions, and water molecules in (I) is a complex arrangement of N—H···Cl and O—H···Cl hydrogen bonds. The most important, as commented above, are the NH2+···Cl1 strong hydrogen bonds allowing the anion encapsulation in the cationic cavity. Chloride ions placed outside this cavity are also connected to NH2+ functional groups via hydrogen bonds, one of which being intermolecular. In the asymmetric unit, water molecules also serve as donor for O—H···Cl hydrogen bonds (Fig. 2). One nitro group also forms weak intermolecular contacts with the water molecule O7.