metal-organic compounds
trans-Diaquabis[5-carboxy-4-carboxylato-2-(4-pyridinio)-1H-imidazol-1-ido-κ2N3,O4]iron(II)
aDepartment of Chemistry and Chemical Engineering, Pingdingshan Engineering College, Pingdingshan, Henan, 467001, People's Republic of China, and bDepartment of Chemistry, Zhengzhou University, Zhengzhou, Henan, 450052, People's Republic of China
*Correspondence e-mail: lixia@zzu.edu.cn, wzhy917@zzu.edu.cn
In the title complex, [Fe(C10H6N3O4)2(H2O)2], the FeII atom is located on a twofold rotation axis and is coordinated by two trans-positioned N,O-bidentate and zwitterionic 5-carboxy-2-(pyridinium-4-yl)-1H-imidazol-1-ide-4-carboxylate H2PIDC− ligands and two water molecules in a distorted environment. In the crystal packing, a three-dimensional network is constructed via hydrogen-bonding involving the water molecules, uncoordinated imidazole N atom, protonated pyridine N and carboxylate O atoms.
Related literature
For the use of the multifunctional connector 4,5-imidazoledicarboxylic acid (H3IDC) in coordination chemistry, see: Liu et al. (2004); Maji et al. (2005); Plieger et al. (2005); Rajendiran et al. (2003); Zou et al. (2005). For the preparation of 2-(pyridin-4-yl)-1H-imidazole-4,5-dicarboxylic acid, see: Sun et al. (2006).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku, 2000); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S160053680902337X/kp2221sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053680902337X/kp2221Isup2.hkl
A mixture of FeII sulfate (0.028 g, 0.1 mmol), 2-(pyridin-4-yl)-1H-imidazole-4,5-dicarboxylic acid (0.024 g, 0.1 mmol) (Sun et al., 2006), NaOH (0.004 g, 0.1 mmol) and H2O (10 ml) was sealed into a Teflon-lined stainless autoclave and heated at 423 K for 3 d, then cooled to room temperature gradually and red block crystals of (I) were obtained.
H atoms attached to N and O atoms were located in a difference Fourier maps and refined as riding in their as-found relative positions, with Uiso(H) = 1.5Ueq(O,N). Other H atoms were positioned geometrically with C—H = 0.95 Å and constrained to ride on their parent atoms with Uiso(H) = 1.2Ueq(C).
Data collection: CrystalClear (Rigaku, 2000); cell
CrystalClear (Rigaku, 2000); data reduction: CrystalClear (Rigaku, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXL97 (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).[Fe(C10H6N3O4)2(H2O)2] | F(000) = 1136 |
Mr = 556.24 | Dx = 1.759 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
a = 21.344 (4) Å | θ = 2.9–28.3° |
b = 7.3900 (15) Å | µ = 0.80 mm−1 |
c = 13.768 (3) Å | T = 173 K |
β = 104.70 (3)° | Block, red |
V = 2100.6 (7) Å3 | 0.25 × 0.15 × 0.12 mm |
Z = 4 |
Mercury CCD diffractometer | 2386 independent reflections |
Radiation source: fine-focus sealed tube | 2083 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.021 |
ω scans | θmax = 27.5°, θmin = 2.9° |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2000) | h = −27→27 |
Tmin = 0.870, Tmax = 0.921 | k = −9→9 |
8952 measured reflections | l = −17→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.029 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.079 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0388P)2 + 2.1264P] where P = (Fo2 + 2Fc2)/3 |
2386 reflections | (Δ/σ)max < 0.001 |
175 parameters | Δρmax = 0.37 e Å−3 |
0 restraints | Δρmin = −0.25 e Å−3 |
[Fe(C10H6N3O4)2(H2O)2] | V = 2100.6 (7) Å3 |
Mr = 556.24 | Z = 4 |
Monoclinic, C2/c | Mo Kα radiation |
a = 21.344 (4) Å | µ = 0.80 mm−1 |
b = 7.3900 (15) Å | T = 173 K |
c = 13.768 (3) Å | 0.25 × 0.15 × 0.12 mm |
β = 104.70 (3)° |
Mercury CCD diffractometer | 2386 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2000) | 2083 reflections with I > 2σ(I) |
Tmin = 0.870, Tmax = 0.921 | Rint = 0.021 |
8952 measured reflections |
R[F2 > 2σ(F2)] = 0.029 | 0 restraints |
wR(F2) = 0.079 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.37 e Å−3 |
2386 reflections | Δρmin = −0.25 e Å−3 |
175 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Fe1 | 0.0000 | 0.19391 (5) | 0.2500 | 0.02067 (11) | |
O1 | −0.10126 (6) | 0.20613 (19) | 0.22910 (9) | 0.0309 (3) | |
O2 | −0.17764 (6) | 0.3056 (2) | 0.29923 (10) | 0.0391 (4) | |
O3 | −0.18924 (6) | 0.3890 (2) | 0.46949 (10) | 0.0406 (4) | |
H3B | −0.1867 | 0.3754 | 0.3994 | 0.061* | |
O4 | −0.12932 (7) | 0.3875 (2) | 0.62503 (10) | 0.0452 (4) | |
O6 | 0.0000 | −0.0877 (3) | 0.2500 | 0.0352 (5) | |
N1 | −0.00912 (6) | 0.21688 (19) | 0.40741 (10) | 0.0203 (3) | |
N2 | −0.01854 (7) | 0.2842 (2) | 0.56415 (10) | 0.0236 (3) | |
N3 | 0.21933 (7) | 0.1542 (2) | 0.63905 (12) | 0.0341 (4) | |
H3 | 0.2608 | 0.1397 | 0.6677 | 0.051* | |
C1 | 0.19580 (9) | 0.1005 (3) | 0.54346 (14) | 0.0334 (4) | |
H1 | 0.2237 | 0.0464 | 0.5079 | 0.040* | |
C2 | 0.18128 (9) | 0.2296 (3) | 0.69186 (14) | 0.0360 (5) | |
H2 | 0.1994 | 0.2653 | 0.7595 | 0.043* | |
C3 | 0.11686 (9) | 0.2556 (3) | 0.64969 (13) | 0.0308 (4) | |
H3A | 0.0903 | 0.3092 | 0.6877 | 0.037* | |
C4 | 0.13117 (8) | 0.1242 (3) | 0.49733 (13) | 0.0281 (4) | |
H4 | 0.1144 | 0.0871 | 0.4296 | 0.034* | |
C5 | 0.09009 (8) | 0.2030 (2) | 0.55010 (12) | 0.0220 (3) | |
C6 | 0.02077 (8) | 0.2333 (2) | 0.50603 (12) | 0.0210 (3) | |
C7 | −0.07755 (8) | 0.3048 (2) | 0.49880 (12) | 0.0215 (3) | |
C8 | −0.13379 (8) | 0.3626 (3) | 0.53665 (13) | 0.0272 (4) | |
C9 | −0.07183 (7) | 0.2631 (2) | 0.40239 (12) | 0.0205 (3) | |
C10 | −0.11994 (8) | 0.2578 (2) | 0.30365 (12) | 0.0244 (4) | |
O7 | 0.0000 | 0.4810 (3) | 0.2500 | 0.0340 (4) | |
H6 | −0.0101 (12) | −0.153 (3) | 0.1969 (18) | 0.051* | |
H7 | 0.0223 (11) | 0.530 (4) | 0.2972 (17) | 0.051* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Fe1 | 0.01809 (17) | 0.0276 (2) | 0.01644 (17) | 0.000 | 0.00460 (12) | 0.000 |
O1 | 0.0218 (6) | 0.0513 (8) | 0.0176 (6) | −0.0004 (6) | 0.0017 (5) | −0.0067 (5) |
O2 | 0.0155 (6) | 0.0730 (11) | 0.0251 (7) | 0.0076 (6) | −0.0012 (5) | −0.0053 (6) |
O3 | 0.0198 (6) | 0.0712 (10) | 0.0312 (7) | 0.0084 (6) | 0.0071 (5) | −0.0069 (7) |
O4 | 0.0391 (8) | 0.0752 (11) | 0.0249 (7) | 0.0073 (8) | 0.0144 (6) | −0.0062 (7) |
O6 | 0.0571 (13) | 0.0273 (10) | 0.0212 (9) | 0.000 | 0.0096 (9) | 0.000 |
N1 | 0.0154 (6) | 0.0279 (7) | 0.0162 (6) | 0.0011 (5) | 0.0016 (5) | 0.0006 (5) |
N2 | 0.0188 (7) | 0.0338 (8) | 0.0170 (7) | −0.0013 (6) | 0.0023 (5) | 0.0005 (6) |
N3 | 0.0156 (7) | 0.0524 (10) | 0.0296 (8) | 0.0029 (7) | −0.0026 (6) | 0.0055 (7) |
C1 | 0.0236 (9) | 0.0457 (11) | 0.0315 (10) | 0.0055 (8) | 0.0079 (7) | 0.0021 (8) |
C2 | 0.0238 (9) | 0.0558 (13) | 0.0231 (9) | −0.0022 (8) | −0.0038 (7) | −0.0021 (8) |
C3 | 0.0217 (9) | 0.0473 (11) | 0.0215 (9) | −0.0002 (8) | 0.0022 (7) | −0.0035 (8) |
C4 | 0.0224 (8) | 0.0391 (10) | 0.0212 (8) | 0.0019 (7) | 0.0025 (7) | 0.0008 (7) |
C5 | 0.0173 (8) | 0.0277 (9) | 0.0190 (8) | −0.0009 (6) | 0.0013 (6) | 0.0039 (6) |
C6 | 0.0179 (8) | 0.0274 (8) | 0.0161 (7) | −0.0003 (6) | 0.0015 (6) | 0.0017 (6) |
C7 | 0.0179 (7) | 0.0285 (9) | 0.0177 (7) | −0.0015 (6) | 0.0035 (6) | −0.0004 (6) |
C8 | 0.0230 (8) | 0.0360 (10) | 0.0235 (8) | −0.0004 (7) | 0.0080 (7) | −0.0019 (7) |
C9 | 0.0151 (7) | 0.0280 (8) | 0.0174 (8) | 0.0003 (6) | 0.0020 (6) | 0.0005 (6) |
C10 | 0.0173 (8) | 0.0347 (9) | 0.0189 (8) | −0.0013 (7) | 0.0004 (6) | −0.0005 (7) |
O7 | 0.0447 (12) | 0.0303 (10) | 0.0206 (9) | 0.000 | −0.0033 (8) | 0.000 |
Fe1—O6 | 2.081 (2) | N3—C2 | 1.341 (3) |
Fe1—O1 | 2.1087 (13) | N3—C1 | 1.344 (2) |
Fe1—O1i | 2.1087 (13) | N3—H3 | 0.8793 |
Fe1—O7 | 2.121 (2) | C1—C4 | 1.376 (2) |
Fe1—N1 | 2.2311 (14) | C1—H1 | 0.9500 |
Fe1—N1i | 2.2311 (14) | C2—C3 | 1.364 (3) |
O1—C10 | 1.251 (2) | C2—H2 | 0.9500 |
O2—C10 | 1.268 (2) | C3—C5 | 1.400 (2) |
O3—C8 | 1.318 (2) | C3—H3A | 0.9500 |
O3—H3B | 0.9857 | C4—C5 | 1.399 (2) |
O4—C8 | 1.210 (2) | C4—H4 | 0.9500 |
O6—H6 | 0.86 (2) | C5—C6 | 1.467 (2) |
N1—C6 | 1.351 (2) | C7—C9 | 1.398 (2) |
N1—C9 | 1.366 (2) | C7—C8 | 1.488 (2) |
N2—C6 | 1.352 (2) | C9—C10 | 1.482 (2) |
N2—C7 | 1.358 (2) | O7—H7 | 0.79 (2) |
O6—Fe1—O1 | 92.45 (4) | N3—C2—C3 | 120.77 (17) |
O6—Fe1—O1i | 92.45 (4) | N3—C2—H2 | 119.6 |
O1—Fe1—O1i | 175.09 (8) | C3—C2—H2 | 119.6 |
O6—Fe1—O7 | 180.0 | C2—C3—C5 | 119.65 (18) |
O1—Fe1—O7 | 87.55 (4) | C2—C3—H3A | 120.2 |
O1i—Fe1—O7 | 87.55 (4) | C5—C3—H3A | 120.2 |
O6—Fe1—N1 | 94.36 (4) | C1—C4—C5 | 120.01 (16) |
O1—Fe1—N1 | 77.89 (5) | C1—C4—H4 | 120.0 |
O1i—Fe1—N1 | 101.73 (6) | C5—C4—H4 | 120.0 |
O7—Fe1—N1 | 85.64 (4) | C4—C5—C3 | 118.05 (15) |
O6—Fe1—N1i | 94.36 (4) | C4—C5—C6 | 123.22 (15) |
O1—Fe1—N1i | 101.73 (6) | C3—C5—C6 | 118.73 (15) |
O1i—Fe1—N1i | 77.89 (5) | N1—C6—N2 | 114.46 (14) |
O7—Fe1—N1i | 85.64 (4) | N1—C6—C5 | 124.85 (15) |
N1—Fe1—N1i | 171.27 (7) | N2—C6—C5 | 120.68 (14) |
C10—O1—Fe1 | 115.47 (11) | N2—C7—C9 | 108.34 (14) |
C8—O3—H3B | 114.1 | N2—C7—C8 | 119.69 (14) |
Fe1—O6—H6 | 124.1 (17) | C9—C7—C8 | 131.97 (15) |
C6—N1—C9 | 103.60 (13) | O4—C8—O3 | 120.70 (17) |
C6—N1—Fe1 | 147.96 (11) | O4—C8—C7 | 122.08 (16) |
C9—N1—Fe1 | 107.20 (10) | O3—C8—C7 | 117.21 (15) |
C6—N2—C7 | 104.46 (13) | N1—C9—C7 | 109.12 (14) |
C2—N3—C1 | 121.75 (16) | N1—C9—C10 | 118.80 (14) |
C2—N3—H3 | 119.1 | C7—C9—C10 | 132.06 (15) |
C1—N3—H3 | 119.2 | O1—C10—O2 | 123.61 (15) |
N3—C1—C4 | 119.76 (17) | O1—C10—C9 | 118.02 (15) |
N3—C1—H1 | 120.1 | O2—C10—C9 | 118.37 (15) |
C4—C1—H1 | 120.1 | Fe1—O7—H7 | 117.2 (19) |
O6—Fe1—O1—C10 | 108.54 (13) | C7—N2—C6—N1 | −0.9 (2) |
O1i—Fe1—O1—C10 | −71.46 (13) | C7—N2—C6—C5 | 178.14 (15) |
O7—Fe1—O1—C10 | −71.46 (13) | C4—C5—C6—N1 | −11.1 (3) |
N1—Fe1—O1—C10 | 14.60 (13) | C3—C5—C6—N1 | 168.70 (17) |
N1i—Fe1—O1—C10 | −156.48 (13) | C4—C5—C6—N2 | 169.95 (17) |
O6—Fe1—N1—C6 | 92.7 (2) | C3—C5—C6—N2 | −10.3 (3) |
O1—Fe1—N1—C6 | −175.7 (2) | C6—N2—C7—C9 | 0.63 (19) |
O1i—Fe1—N1—C6 | −0.7 (2) | C6—N2—C7—C8 | −179.49 (16) |
O7—Fe1—N1—C6 | −87.3 (2) | N2—C7—C8—O4 | −2.2 (3) |
N1i—Fe1—N1—C6 | −87.3 (2) | C9—C7—C8—O4 | 177.7 (2) |
O6—Fe1—N1—C9 | −103.82 (10) | N2—C7—C8—O3 | 176.82 (16) |
O1—Fe1—N1—C9 | −12.24 (11) | C9—C7—C8—O3 | −3.3 (3) |
O1i—Fe1—N1—C9 | 162.76 (11) | C6—N1—C9—C7 | −0.38 (18) |
O7—Fe1—N1—C9 | 76.18 (10) | Fe1—N1—C9—C7 | −171.43 (11) |
N1i—Fe1—N1—C9 | 76.18 (10) | C6—N1—C9—C10 | −179.12 (15) |
C2—N3—C1—C4 | 0.6 (3) | Fe1—N1—C9—C10 | 9.83 (18) |
C1—N3—C2—C3 | −0.4 (3) | N2—C7—C9—N1 | −0.2 (2) |
N3—C2—C3—C5 | 0.0 (3) | C8—C7—C9—N1 | 179.98 (17) |
N3—C1—C4—C5 | −0.4 (3) | N2—C7—C9—C10 | 178.35 (17) |
C1—C4—C5—C3 | 0.0 (3) | C8—C7—C9—C10 | −1.5 (3) |
C1—C4—C5—C6 | 179.77 (17) | Fe1—O1—C10—O2 | 166.15 (15) |
C2—C3—C5—C4 | 0.2 (3) | Fe1—O1—C10—C9 | −13.9 (2) |
C2—C3—C5—C6 | −179.60 (18) | N1—C9—C10—O1 | 1.9 (2) |
C9—N1—C6—N2 | 0.84 (19) | C7—C9—C10—O1 | −176.46 (18) |
Fe1—N1—C6—N2 | 164.57 (16) | N1—C9—C10—O2 | −178.12 (16) |
C9—N1—C6—C5 | −178.20 (16) | C7—C9—C10—O2 | 3.5 (3) |
Fe1—N1—C6—C5 | −14.5 (3) |
Symmetry code: (i) −x, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O6—H6···N2ii | 0.86 (2) | 2.04 (2) | 2.8806 (18) | 169 (3) |
N3—H3···O2iii | 0.88 | 1.99 | 2.707 (2) | 138 |
O3—H3B···O2 | 0.99 | 1.53 | 2.4959 (19) | 166 |
Symmetry codes: (ii) x, −y, z−1/2; (iii) x+1/2, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [Fe(C10H6N3O4)2(H2O)2] |
Mr | 556.24 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 173 |
a, b, c (Å) | 21.344 (4), 7.3900 (15), 13.768 (3) |
β (°) | 104.70 (3) |
V (Å3) | 2100.6 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.80 |
Crystal size (mm) | 0.25 × 0.15 × 0.12 |
Data collection | |
Diffractometer | Mercury CCD diffractometer |
Absorption correction | Multi-scan (CrystalClear; Rigaku, 2000) |
Tmin, Tmax | 0.870, 0.921 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8952, 2386, 2083 |
Rint | 0.021 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.029, 0.079, 1.04 |
No. of reflections | 2386 |
No. of parameters | 175 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.37, −0.25 |
Computer programs: CrystalClear (Rigaku, 2000), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O6—H6···N2i | 0.86 (2) | 2.04 (2) | 2.8806 (18) | 169 (3) |
N3—H3···O2ii | 0.88 | 1.99 | 2.707 (2) | 137.8 |
O3—H3B···O2 | 0.99 | 1.53 | 2.4959 (19) | 165.5 |
Symmetry codes: (i) x, −y, z−1/2; (ii) x+1/2, −y+1/2, z+1/2. |
Acknowledgements
This work was supported by the National Natural Science Foundation of China (20771094, 20671083), the Science and Technology Key Task of Henan Province (0524270061) and the China Postdoctoral Science Foundation (20070410877).
References
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Multifunctional connector 4,5-imidazoledicarboxylic acid (H3IDC), adjusting its existing forms and coordination modes through pH or temperature in assembly reaction systems, shows more interesting traits in the construction of nano-structures and MOFs, and thus has been extensively investigated in coordination chemistry (Maji et al., 2005; Liu et al., 2004; Zou et al., 2005; Rajendiran et al., 2003; Plieger et al., 2005). 2-(Pyridin-4-yl)-1H-imidazole-4,5-dicarboxylate acid (H3PIDC), a close analogue of H3IDC, is endowed a promising building block H3IDC and the additional pyridine group modulate coordination ability to give more potential coordination modes and enlarge conjugation system. In order to explore the coordination chemistry of this ligand, we have isolated a new FeII complex, [Fe(H2PIDC)2(H2O)2], (I), by the reaction of H3PIDC and FeII sulfate under the hydrothermal condition. We report here the single-crystal structure of this complex.
The molecule of (I) is a discrete neutral monomer (Fig. 1) in which the Fe atom resides on a twofold rotation axes and the asymmetric unit comprises a half of the [Fe(H2PIDC)2(H2O)2] formula unit. Each Fe atom is hexacoordinated by N2O4 with two chelating rings from two H2PIDC ligands arranged symmetrically in the equatorial plane and two water molecules occupying the apical sites, defining an octahedral coordination (Table 1). In this complex, a carboxyl group and imidazole group are deprotonated and the pyridyl group is protonated, and the ligand bears a formal charge of -1. The free carboxylate atoms O3 and O2 form an intramolecular hydrogen bond (Table 2). All non-H atoms in the imidazole-4,5-dicarboxyl group are nearly coplanar [the mean deviation is 0.025 (4) Å], and the dihedral angle between imidazole group and pyridine group is 10.3 (2)°.
The hydrogen bonding involves the water molecules, uncoordinated imidazole N atom, protonated pyridine N and carboxylate O atoms (Table 2 and Fig. 2).