organic compounds
4-(sec-Butylamino)-3-nitrobenzoic acid
aSchool of Pharmaceutical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bKulliyyah of Science, International Islamic University Malaysia (IIUM), Jalan Istana, Bandar Indera Mahkota, 25200, Kuantan, Pahang, Malaysia, and cX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
The 11H14N2O4, consists of two crystallographically independent molecules (A and B). In each, intramolecular N—H⋯O hydrogen bonds generate S(6) ring motifs. The mean plane of the nitro group forms dihedral angles of 4.5 (3) and 0.5 (3)° with the benzene ring in molecules A and B, respectively. In molecule A, there is disorder of the butylamino group which corresponds to an approximate 180° rotation about the N—C(H) bond, forming two sites with refined occupancies of 0.722 (6) and 0.278 (6). Molecule B is similarly disordered but in addition there is further rotational disorder about the C(H)—C(H2) bond giving a ratio of occupancies for three components of 0.42:0.35:0.23. In the intermolecular O—H⋯O hydrogen bonds link molecules into centrosymmetric dimers generating R22(8) ring motifs. The is also stabilized by weak intermolecular C—H⋯O interactions.
of title compound, CRelated literature
For the synthesis of bioactive heterocycles using nitro benzoic acid derivatives as the starting materials, see: Burgey et al. (2006); Ishida et al. (2006); Semple et al. (2006); Narendra Babu et al. (2009). For hydrogen-bond graph-set motifs, see: Bernstein et al. (1995). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536809021655/lh2837sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809021655/lh2837Isup2.hkl
Ethyl 4-(sec-butylamino)-3-nitro-benzoate (0.2 g, 0.00075 mol) and KOH (0.084 g, 0.0015 mol) was refluxed in aqueous ethanol (5 ml) for 3 h. After completion of the reaction, ethanol was distilled off and the reaction mixture was diluted with water (5 ml). The aqueous layer was washed with dichloromethane (5 ml x 2) and acidified with concentrated hydrochloric acid to afford yellow solid. Recrystallisation of the crude product with hot ethyl acetate afforded yellow crystals.
Atoms H2NA and H2NB were located in a difference Fourier map and refined freely. The H-atoms of the hydroxy groups were positioned using a rotating group model and constrained with a fixed distance of 0.82 Å. The H-atoms for C8A, C10A, C8B and C10B were positioned geometrically and refined as riding with the parent atom with Uiso(H) = 1.2 and 1.5 Ueq(C). The rest of the hydrogen atoms were positioned geometrically and refined using a riding model with C-H = 0.93–0.96 Å and Uiso(H) = 1.2 and 1.5 Ueq(C). A rotating-group model was applied for the methyl groups. The methyl group of molecule A is disordered over two positions with refined site-occupancy ratio of 0.722 (6) : 0.278 (6), whereas the methyl group of molecule B is treated as disordered over three positions with refined site-occupancy ratio of 0.413 (9) : 0.327 (8) : 0.237 (9) with SUMP command equal to 1.0 (1). For the final
the site-occupancy ratio of molecule B is fixed to 0.42 : 0.35 : 0.23. The same Uij parameters were used for atom pairs C9D/C9A, C9A/C8B and C9A/C9C. The C9E–C10B bond was refined with C-C distance restraint of 1.40 Å.Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound with atom labels and 30% probability displacement ellipsoids for non-H atoms. Intramolecular hydrogen bonds are shown as dashed lines. All disorder components are shown. | |
Fig. 2. The major disorder component of the title compound with atom labels and 50% probability displacement ellipsoids for non-H atoms. Intramolecular hydrogen bonds are shown as dashed lines. | |
Fig. 3. The crystal packing of the title compound, showing the centrosymmetric dimers. Intermolecular hydrogen bonds are shown as dashed lines. Only the major disorder component is shown. |
C11H14N2O4 | F(000) = 1008 |
Mr = 238.24 | Dx = 1.353 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 5403 reflections |
a = 6.9722 (4) Å | θ = 2.3–26.2° |
b = 15.7250 (8) Å | µ = 0.10 mm−1 |
c = 21.8111 (11) Å | T = 110 K |
β = 101.896 (3)° | Needle, yellow |
V = 2340.0 (2) Å3 | 0.57 × 0.08 × 0.04 mm |
Z = 8 |
Bruker SMART APEXII CCD area-detector diffractometer | 4600 independent reflections |
Radiation source: fine-focus sealed tube | 3357 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.049 |
ϕ and ω scans | θmax = 26.0°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −8→8 |
Tmin = 0.922, Tmax = 0.995 | k = −16→19 |
23247 measured reflections | l = −26→26 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.070 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.165 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0456P)2 + 3.6565P] where P = (Fo2 + 2Fc2)/3 |
4600 reflections | (Δ/σ)max < 0.001 |
335 parameters | Δρmax = 0.56 e Å−3 |
2 restraints | Δρmin = −0.60 e Å−3 |
C11H14N2O4 | V = 2340.0 (2) Å3 |
Mr = 238.24 | Z = 8 |
Monoclinic, P21/c | Mo Kα radiation |
a = 6.9722 (4) Å | µ = 0.10 mm−1 |
b = 15.7250 (8) Å | T = 110 K |
c = 21.8111 (11) Å | 0.57 × 0.08 × 0.04 mm |
β = 101.896 (3)° |
Bruker SMART APEXII CCD area-detector diffractometer | 4600 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 3357 reflections with I > 2σ(I) |
Tmin = 0.922, Tmax = 0.995 | Rint = 0.049 |
23247 measured reflections |
R[F2 > 2σ(F2)] = 0.070 | 2 restraints |
wR(F2) = 0.165 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | Δρmax = 0.56 e Å−3 |
4600 reflections | Δρmin = −0.60 e Å−3 |
335 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 110.0 (1)K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1A | 0.4975 (3) | 0.90262 (13) | 0.95499 (9) | 0.0352 (5) | |
H1OA | 0.4983 | 0.9220 | 0.9899 | 0.053* | |
O2A | 0.5198 (3) | 1.04071 (13) | 0.93205 (9) | 0.0347 (5) | |
O3A | 0.5205 (3) | 1.11848 (13) | 0.71999 (10) | 0.0404 (6) | |
O4A | 0.5426 (4) | 1.02816 (15) | 0.64713 (10) | 0.0477 (6) | |
N1A | 0.5280 (4) | 1.04472 (16) | 0.70177 (12) | 0.0325 (6) | |
N2A | 0.5194 (4) | 0.86394 (17) | 0.66720 (12) | 0.0310 (6) | |
C1A | 0.5195 (4) | 0.97566 (18) | 0.74513 (13) | 0.0272 (6) | |
C2A | 0.5183 (4) | 0.99913 (19) | 0.80664 (13) | 0.0276 (6) | |
H2AA | 0.5215 | 1.0564 | 0.8174 | 0.033* | |
C3A | 0.5126 (4) | 0.93828 (18) | 0.85192 (13) | 0.0260 (6) | |
C4A | 0.5080 (4) | 0.85228 (19) | 0.83378 (14) | 0.0304 (7) | |
H4AA | 0.5045 | 0.8104 | 0.8636 | 0.036* | |
C5A | 0.5086 (4) | 0.82863 (19) | 0.77366 (13) | 0.0310 (7) | |
H5AA | 0.5044 | 0.7711 | 0.7636 | 0.037* | |
C6A | 0.5155 (4) | 0.88925 (18) | 0.72596 (13) | 0.0271 (6) | |
C7A | 0.5153 (4) | 0.77568 (19) | 0.64471 (14) | 0.0324 (7) | |
H7AA | 0.5997 | 0.7415 | 0.6770 | 0.039* | |
C8A | 0.6020 (5) | 0.7739 (2) | 0.58601 (14) | 0.0415 (8) | |
H8AA | 0.6047 | 0.7163 | 0.5716 | 0.050* | 0.722 (6) |
H8AB | 0.7345 | 0.7944 | 0.5961 | 0.050* | 0.722 (6) |
H8AC | 0.6047 | 0.7163 | 0.5716 | 0.062* | 0.278 (6) |
H8AD | 0.7345 | 0.7944 | 0.5961 | 0.062* | 0.278 (6) |
H8AE | 0.5210 | 0.8065 | 0.5534 | 0.062* | 0.278 (6) |
C9A | 0.4827 (11) | 0.8285 (4) | 0.5329 (3) | 0.0793 (11) | 0.722 (6) |
H9AA | 0.5300 | 0.8193 | 0.4951 | 0.119* | 0.722 (6) |
H9AB | 0.4967 | 0.8875 | 0.5443 | 0.119* | 0.722 (6) |
H9AC | 0.3469 | 0.8127 | 0.5262 | 0.119* | 0.722 (6) |
C9C | 0.186 (3) | 0.7705 (12) | 0.5685 (6) | 0.0793 (11) | 0.278 (6) |
H9CA | 0.0556 | 0.7473 | 0.5620 | 0.119* | 0.278 (6) |
H9CB | 0.2478 | 0.7522 | 0.5354 | 0.119* | 0.278 (6) |
H9CC | 0.1786 | 0.8315 | 0.5686 | 0.119* | 0.278 (6) |
C10A | 0.3092 (5) | 0.7385 (2) | 0.63375 (15) | 0.0407 (8) | |
H10A | 0.2611 | 0.7413 | 0.6719 | 0.061* | 0.722 (6) |
H10B | 0.2244 | 0.7706 | 0.6018 | 0.061* | 0.722 (6) |
H10C | 0.3120 | 0.6803 | 0.6207 | 0.061* | 0.722 (6) |
H10D | 0.2465 | 0.7554 | 0.6671 | 0.049* | 0.278 (6) |
H10E | 0.3156 | 0.6775 | 0.6334 | 0.049* | 0.278 (6) |
C11A | 0.5106 (4) | 0.96526 (19) | 0.91601 (13) | 0.0279 (6) | |
O1B | 0.9570 (3) | 0.58178 (15) | 0.55036 (10) | 0.0404 (6) | |
H1OB | 0.9671 | 0.5690 | 0.5147 | 0.061* | |
O2B | 1.0142 (3) | 0.44245 (15) | 0.56615 (10) | 0.0401 (6) | |
O3B | 1.0282 (3) | 0.32730 (14) | 0.77010 (10) | 0.0411 (6) | |
O4B | 0.9980 (3) | 0.40380 (15) | 0.84984 (10) | 0.0446 (6) | |
N1B | 1.0041 (3) | 0.39668 (17) | 0.79356 (12) | 0.0330 (6) | |
N2B | 0.9466 (4) | 0.5691 (2) | 0.83945 (12) | 0.0393 (7) | |
C1B | 0.9824 (4) | 0.47178 (18) | 0.75471 (13) | 0.0268 (6) | |
C2B | 0.9906 (4) | 0.46020 (19) | 0.69198 (13) | 0.0268 (6) | |
H2BA | 1.0104 | 0.4060 | 0.6773 | 0.032* | |
C3B | 0.9699 (4) | 0.5281 (2) | 0.65165 (13) | 0.0289 (7) | |
C4B | 0.9402 (4) | 0.60957 (19) | 0.67420 (13) | 0.0308 (7) | |
H4BA | 0.9256 | 0.6558 | 0.6471 | 0.037* | |
C5B | 0.9326 (4) | 0.6215 (2) | 0.73584 (14) | 0.0333 (7) | |
H5BA | 0.9118 | 0.6761 | 0.7495 | 0.040* | |
C6B | 0.9549 (4) | 0.5542 (2) | 0.77919 (13) | 0.0298 (7) | |
C7B | 0.9414 (5) | 0.6537 (2) | 0.86791 (16) | 0.0504 (10) | |
H7BA | 0.8414 | 0.6878 | 0.8405 | 0.061* | |
C8B | 0.8803 (8) | 0.6422 (3) | 0.92986 (19) | 0.0793 (11) | |
H8BA | 0.9565 | 0.5983 | 0.9541 | 0.095* | 0.42 |
H8BB | 0.7449 | 0.6257 | 0.9225 | 0.095* | 0.42 |
H8BC | 0.7414 | 0.6519 | 0.9212 | 0.095* | 0.35 |
H8BD | 0.9383 | 0.6887 | 0.9556 | 0.095* | 0.35 |
H8BE | 0.7565 | 0.6132 | 0.9231 | 0.119* | 0.23 |
H8BF | 0.9767 | 0.6095 | 0.9580 | 0.119* | 0.23 |
H8BG | 0.8675 | 0.6972 | 0.9477 | 0.119* | 0.23 |
C9B | 0.9071 (12) | 0.7303 (5) | 0.9672 (4) | 0.044 (2) | 0.42 |
H9BA | 0.8896 | 0.7213 | 1.0092 | 0.066* | 0.42 |
H9BB | 0.8114 | 0.7704 | 0.9465 | 0.066* | 0.42 |
H9BC | 1.0363 | 0.7522 | 0.9682 | 0.066* | 0.42 |
C9D | 0.914 (2) | 0.5772 (9) | 0.9672 (5) | 0.0793 (11) | 0.35 |
H9DA | 0.8517 | 0.5277 | 0.9461 | 0.119* | 0.35 |
H9DB | 0.8613 | 0.5881 | 1.0038 | 0.119* | 0.35 |
H9DC | 1.0523 | 0.5678 | 0.9792 | 0.119* | 0.35 |
C9E | 1.092 (3) | 0.7665 (8) | 0.9122 (8) | 0.081 (7) | 0.23 |
H9EA | 1.1756 | 0.8140 | 0.9085 | 0.121* | 0.23 |
H9EB | 1.1137 | 0.7487 | 0.9552 | 0.121* | 0.23 |
H9EC | 0.9577 | 0.7829 | 0.8983 | 0.121* | 0.23 |
C10B | 1.1359 (6) | 0.6989 (3) | 0.8750 (2) | 0.0694 (13) | |
H10F | 1.1684 | 0.7036 | 0.8345 | 0.104* | 0.42 |
H10G | 1.1268 | 0.7547 | 0.8920 | 0.104* | 0.42 |
H10H | 1.2360 | 0.6671 | 0.9024 | 0.104* | 0.42 |
H10I | 1.1684 | 0.7036 | 0.8345 | 0.104* | 0.35 |
H10J | 1.1268 | 0.7547 | 0.8920 | 0.104* | 0.35 |
H10K | 1.2360 | 0.6671 | 0.9024 | 0.104* | 0.35 |
H10L | 1.1610 | 0.7152 | 0.8350 | 0.083* | 0.23 |
H10M | 1.2428 | 0.6652 | 0.8971 | 0.083* | 0.23 |
C11B | 0.9816 (4) | 0.5153 (2) | 0.58518 (13) | 0.0307 (7) | |
H2NA | 0.523 (5) | 0.903 (2) | 0.6440 (15) | 0.031 (9)* | |
H2NB | 0.961 (5) | 0.522 (2) | 0.8616 (17) | 0.053 (12)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1A | 0.0455 (13) | 0.0321 (12) | 0.0299 (11) | −0.0005 (10) | 0.0117 (10) | −0.0033 (9) |
O2A | 0.0423 (13) | 0.0312 (12) | 0.0315 (11) | −0.0004 (10) | 0.0095 (9) | −0.0036 (9) |
O3A | 0.0496 (14) | 0.0281 (12) | 0.0448 (13) | −0.0035 (10) | 0.0130 (11) | 0.0000 (10) |
O4A | 0.0692 (17) | 0.0418 (14) | 0.0355 (13) | −0.0061 (12) | 0.0187 (12) | −0.0002 (10) |
N1A | 0.0310 (14) | 0.0316 (15) | 0.0359 (15) | −0.0030 (11) | 0.0088 (11) | −0.0023 (11) |
N2A | 0.0318 (14) | 0.0326 (15) | 0.0279 (14) | 0.0001 (11) | 0.0048 (11) | 0.0012 (12) |
C1A | 0.0183 (13) | 0.0321 (16) | 0.0307 (15) | 0.0016 (12) | 0.0037 (11) | 0.0047 (12) |
C2A | 0.0180 (13) | 0.0289 (15) | 0.0349 (16) | 0.0000 (11) | 0.0033 (12) | −0.0042 (13) |
C3A | 0.0195 (13) | 0.0302 (16) | 0.0287 (15) | 0.0015 (11) | 0.0056 (12) | −0.0003 (12) |
C4A | 0.0260 (15) | 0.0306 (16) | 0.0344 (16) | 0.0010 (12) | 0.0058 (13) | 0.0037 (13) |
C5A | 0.0329 (16) | 0.0271 (16) | 0.0325 (16) | 0.0023 (13) | 0.0052 (13) | −0.0033 (13) |
C6A | 0.0185 (13) | 0.0298 (16) | 0.0318 (15) | 0.0020 (12) | 0.0024 (12) | −0.0032 (13) |
C7A | 0.0341 (16) | 0.0321 (17) | 0.0294 (15) | 0.0024 (13) | 0.0027 (13) | −0.0061 (13) |
C8A | 0.0405 (18) | 0.050 (2) | 0.0341 (17) | −0.0005 (16) | 0.0078 (14) | −0.0102 (15) |
C9A | 0.112 (3) | 0.091 (3) | 0.0410 (17) | 0.009 (2) | 0.0301 (19) | −0.0072 (17) |
C9C | 0.112 (3) | 0.091 (3) | 0.0410 (17) | 0.009 (2) | 0.0301 (19) | −0.0072 (17) |
C10A | 0.0396 (18) | 0.0367 (18) | 0.0433 (19) | −0.0024 (15) | 0.0032 (15) | −0.0039 (15) |
C11A | 0.0189 (14) | 0.0338 (17) | 0.0301 (16) | −0.0009 (12) | 0.0032 (12) | −0.0022 (13) |
O1B | 0.0443 (13) | 0.0517 (14) | 0.0261 (11) | 0.0019 (11) | 0.0093 (10) | 0.0018 (10) |
O2B | 0.0418 (13) | 0.0476 (14) | 0.0312 (12) | −0.0007 (11) | 0.0078 (10) | −0.0070 (10) |
O3B | 0.0414 (13) | 0.0321 (13) | 0.0478 (14) | 0.0005 (10) | 0.0043 (11) | 0.0024 (11) |
O4B | 0.0488 (14) | 0.0551 (15) | 0.0301 (12) | 0.0012 (12) | 0.0087 (10) | 0.0109 (11) |
N1B | 0.0239 (13) | 0.0383 (16) | 0.0358 (14) | −0.0015 (11) | 0.0041 (11) | 0.0050 (12) |
N2B | 0.0423 (16) | 0.0478 (18) | 0.0271 (14) | 0.0093 (13) | 0.0054 (12) | −0.0035 (13) |
C1B | 0.0183 (13) | 0.0331 (16) | 0.0287 (15) | 0.0008 (12) | 0.0042 (11) | 0.0007 (12) |
C2B | 0.0164 (13) | 0.0342 (16) | 0.0299 (15) | −0.0011 (12) | 0.0048 (11) | −0.0045 (13) |
C3B | 0.0163 (13) | 0.0415 (18) | 0.0279 (15) | −0.0023 (12) | 0.0026 (11) | −0.0041 (13) |
C4B | 0.0279 (15) | 0.0340 (17) | 0.0297 (15) | −0.0002 (13) | 0.0039 (12) | 0.0048 (13) |
C5B | 0.0280 (15) | 0.0353 (17) | 0.0354 (17) | 0.0059 (13) | 0.0035 (13) | −0.0045 (14) |
C6B | 0.0215 (14) | 0.0421 (18) | 0.0247 (15) | 0.0039 (13) | 0.0020 (12) | 0.0011 (13) |
C7B | 0.054 (2) | 0.061 (2) | 0.0341 (18) | 0.0158 (19) | 0.0043 (16) | −0.0147 (17) |
C8B | 0.112 (3) | 0.091 (3) | 0.0410 (17) | 0.009 (2) | 0.0301 (19) | −0.0072 (17) |
C9B | 0.047 (5) | 0.047 (5) | 0.042 (4) | 0.010 (4) | 0.020 (4) | −0.008 (4) |
C9D | 0.112 (3) | 0.091 (3) | 0.0410 (17) | 0.009 (2) | 0.0301 (19) | −0.0072 (17) |
C9E | 0.113 (17) | 0.041 (10) | 0.080 (14) | −0.033 (11) | 0.000 (12) | 0.013 (10) |
C10B | 0.059 (3) | 0.065 (3) | 0.071 (3) | 0.012 (2) | −0.018 (2) | −0.036 (2) |
C11B | 0.0210 (14) | 0.0426 (19) | 0.0275 (15) | −0.0022 (13) | 0.0031 (12) | −0.0003 (14) |
O1A—C11A | 1.317 (3) | N2B—H2NB | 0.88 (4) |
O1A—H1OA | 0.8200 | C1B—C2B | 1.393 (4) |
O2A—C11A | 1.235 (3) | C1B—C6B | 1.429 (4) |
O3A—N1A | 1.231 (3) | C2B—C3B | 1.372 (4) |
O4A—N1A | 1.244 (3) | C2B—H2BA | 0.9300 |
N1A—C1A | 1.449 (4) | C3B—C4B | 1.403 (4) |
N2A—C6A | 1.348 (4) | C3B—C11B | 1.483 (4) |
N2A—C7A | 1.470 (4) | C4B—C5B | 1.369 (4) |
N2A—H2NA | 0.80 (3) | C4B—H4BA | 0.9300 |
C1A—C2A | 1.393 (4) | C5B—C6B | 1.406 (4) |
C1A—C6A | 1.420 (4) | C5B—H5BA | 0.9300 |
C2A—C3A | 1.382 (4) | C7B—C8B | 1.509 (5) |
C2A—H2AA | 0.9300 | C7B—C10B | 1.511 (6) |
C3A—C4A | 1.408 (4) | C7B—H7BA | 0.9800 |
C3A—C11A | 1.464 (4) | C8B—C9D | 1.297 (14) |
C4A—C5A | 1.364 (4) | C8B—C9B | 1.599 (9) |
C4A—H4AA | 0.9300 | C8B—H8BA | 0.9601 |
C5A—C6A | 1.419 (4) | C8B—H8BB | 0.9600 |
C5A—H5AA | 0.9300 | C8B—H8BC | 0.9600 |
C7A—C10A | 1.524 (4) | C8B—H8BD | 0.9600 |
C7A—C8A | 1.525 (4) | C8B—H8BE | 0.9600 |
C7A—H7AA | 0.9800 | C8B—H8BF | 0.9601 |
C8A—C9A | 1.541 (7) | C8B—H8BG | 0.9600 |
C8A—H8AA | 0.9601 | C9B—H8BD | 0.7494 |
C8A—H8AB | 0.9599 | C9B—H8BG | 0.6932 |
C8A—H8AC | 0.9601 | C9B—H9BA | 0.9600 |
C8A—H8AD | 0.9599 | C9B—H9BB | 0.9600 |
C8A—H8AE | 0.9600 | C9B—H9BC | 0.9600 |
C9A—H8AE | 0.5846 | C9D—H8BA | 0.5627 |
C9A—H9AA | 0.9600 | C9D—H8BB | 1.5624 |
C9A—H9AB | 0.9600 | C9D—H8BE | 1.4173 |
C9A—H9AC | 0.9600 | C9D—H8BF | 0.7266 |
C9C—C10A | 1.586 (16) | C9D—H9DA | 0.9600 |
C9C—H9CA | 0.9600 | C9D—H9DB | 0.9600 |
C9C—H9CB | 0.9600 | C9D—H9DC | 0.9600 |
C9C—H9CC | 0.9600 | C9E—C10B | 1.408 (9) |
C9C—H10B | 0.7203 | C9E—H9EA | 0.9600 |
C10A—H10A | 0.9601 | C9E—H9EB | 0.9600 |
C10A—H10B | 0.9599 | C9E—H9EC | 0.9600 |
C10A—H10C | 0.9600 | C9E—H10G | 0.5739 |
C10A—H10D | 0.9601 | C9E—H10J | 0.5739 |
C10A—H10E | 0.9600 | C10B—H10F | 0.9600 |
O1B—C11B | 1.283 (4) | C10B—H10G | 0.9599 |
O1B—H1OB | 0.8200 | C10B—H10H | 0.9599 |
O2B—C11B | 1.254 (4) | C10B—H10I | 0.9600 |
O3B—N1B | 1.231 (3) | C10B—H10J | 0.9599 |
O4B—N1B | 1.242 (3) | C10B—H10K | 0.9599 |
N1B—C1B | 1.443 (4) | C10B—H10L | 0.9600 |
N2B—C6B | 1.348 (4) | C10B—H10M | 0.9601 |
N2B—C7B | 1.472 (4) | ||
C11A—O1A—H1OA | 109.5 | C5B—C6B—C1B | 115.8 (3) |
O3A—N1A—O4A | 121.6 (3) | N2B—C7B—C8B | 107.8 (3) |
O3A—N1A—C1A | 119.0 (2) | N2B—C7B—C10B | 111.7 (3) |
O4A—N1A—C1A | 119.4 (2) | C8B—C7B—C10B | 112.2 (3) |
C6A—N2A—C7A | 126.4 (3) | N2B—C7B—H7BA | 108.4 |
C6A—N2A—H2NA | 113 (2) | C8B—C7B—H7BA | 108.4 |
C7A—N2A—H2NA | 121 (2) | C10B—C7B—H7BA | 108.4 |
C2A—C1A—C6A | 122.2 (3) | C9D—C8B—C7B | 127.5 (7) |
C2A—C1A—N1A | 116.0 (3) | C9D—C8B—C9B | 112.1 (7) |
C6A—C1A—N1A | 121.7 (3) | C7B—C8B—C9B | 109.1 (5) |
C3A—C2A—C1A | 120.8 (3) | C7B—C8B—H8BA | 110.6 |
C3A—C2A—H2AA | 119.6 | C9B—C8B—H8BA | 110.4 |
C1A—C2A—H2AA | 119.6 | C9D—C8B—H8BB | 86.3 |
C2A—C3A—C4A | 117.8 (3) | C7B—C8B—H8BB | 109.4 |
C2A—C3A—C11A | 119.3 (3) | C9B—C8B—H8BB | 109.1 |
C4A—C3A—C11A | 122.9 (3) | H8BA—C8B—H8BB | 108.2 |
C5A—C4A—C3A | 121.9 (3) | C9D—C8B—H8BC | 107.0 |
C5A—C4A—H4AA | 119.1 | C7B—C8B—H8BC | 105.3 |
C3A—C4A—H4AA | 119.1 | C9B—C8B—H8BC | 88.3 |
C4A—C5A—C6A | 121.9 (3) | H8BA—C8B—H8BC | 130.2 |
C4A—C5A—H5AA | 119.0 | C9D—C8B—H8BD | 103.5 |
C6A—C5A—H5AA | 119.0 | C7B—C8B—H8BD | 105.7 |
N2A—C6A—C5A | 120.6 (3) | H8BA—C8B—H8BD | 96.2 |
N2A—C6A—C1A | 124.0 (3) | H8BB—C8B—H8BD | 125.8 |
C5A—C6A—C1A | 115.4 (3) | H8BC—C8B—H8BD | 106.3 |
N2A—C7A—C10A | 111.5 (2) | C9D—C8B—H8BE | 76.2 |
N2A—C7A—C8A | 108.3 (3) | C7B—C8B—H8BE | 109.3 |
C10A—C7A—C8A | 112.7 (3) | C9B—C8B—H8BE | 119.7 |
N2A—C7A—H7AA | 108.1 | H8BA—C8B—H8BE | 97.0 |
C10A—C7A—H7AA | 108.1 | H8BD—C8B—H8BE | 135.1 |
C8A—C7A—H7AA | 108.1 | C7B—C8B—H8BF | 110.3 |
C7A—C8A—C9A | 112.0 (3) | C9B—C8B—H8BF | 98.3 |
C7A—C8A—H8AA | 109.2 | H8BB—C8B—H8BF | 119.8 |
C9A—C8A—H8AA | 108.9 | H8BC—C8B—H8BF | 139.1 |
C7A—C8A—H8AB | 109.3 | H8BD—C8B—H8BF | 83.0 |
C9A—C8A—H8AB | 109.3 | H8BE—C8B—H8BF | 109.5 |
H8AA—C8A—H8AB | 108.0 | C9D—C8B—H8BG | 118.4 |
C7A—C8A—H8AC | 109.2 | C7B—C8B—H8BG | 108.8 |
C9A—C8A—H8AC | 108.9 | H8BA—C8B—H8BG | 120.8 |
H8AB—C8A—H8AC | 108.0 | H8BB—C8B—H8BG | 98.1 |
C7A—C8A—H8AD | 109.3 | H8BC—C8B—H8BG | 76.2 |
C9A—C8A—H8AD | 109.3 | H8BE—C8B—H8BG | 109.5 |
H8AA—C8A—H8AD | 108.0 | H8BF—C8B—H8BG | 109.5 |
H8AC—C8A—H8AD | 108.0 | C8B—C9B—H9BA | 109.5 |
C7A—C8A—H8AE | 109.7 | H8BD—C9B—H9BA | 107.2 |
H8AA—C8A—H8AE | 108.1 | C8B—C9B—H9BB | 109.5 |
H8AB—C8A—H8AE | 112.5 | H8BD—C9B—H9BB | 129.6 |
H8AC—C8A—H8AE | 108.1 | C8B—C9B—H9BC | 109.5 |
H8AD—C8A—H8AE | 112.5 | H8BD—C9B—H9BC | 89.1 |
C8A—C9A—H9AA | 109.5 | H8BA—C9D—H8BB | 78.9 |
H8AE—C9A—H9AA | 112.5 | H8BA—C9D—H8BE | 80.7 |
C8A—C9A—H9AB | 109.5 | C8B—C9D—H8BF | 46.9 |
H8AE—C9A—H9AB | 111.6 | H8BB—C9D—H8BF | 84.7 |
C8A—C9A—H9AC | 109.5 | H8BE—C9D—H8BF | 87.8 |
H8AE—C9A—H9AC | 104.2 | C8B—C9D—H9DA | 109.5 |
C10A—C9C—H9CA | 109.5 | C8B—C9D—H9DB | 109.5 |
C10A—C9C—H9CB | 109.5 | H9DA—C9D—H9DB | 109.5 |
H9CA—C9C—H9CB | 109.5 | C8B—C9D—H9DC | 109.5 |
C10A—C9C—H9CC | 109.5 | H9DA—C9D—H9DC | 109.5 |
H9CA—C9C—H9CC | 109.5 | H9DB—C9D—H9DC | 109.5 |
H9CB—C9C—H9CC | 109.5 | C10B—C9E—H9EA | 109.5 |
H9CA—C9C—H10B | 107.3 | C10B—C9E—H9EB | 109.5 |
H9CB—C9C—H10B | 128.6 | C10B—C9E—H9EC | 109.5 |
H9CC—C9C—H10B | 90.2 | H9EA—C9E—H10G | 80.3 |
C7A—C10A—C9C | 109.8 (7) | H9EB—C9E—H10G | 130.4 |
C7A—C10A—H10A | 109.5 | H9EC—C9E—H10G | 112.4 |
C9C—C10A—H10A | 122.8 | H9EA—C9E—H10J | 80.3 |
C7A—C10A—H10B | 109.3 | H9EB—C9E—H10J | 130.4 |
H10A—C10A—H10B | 109.5 | H9EC—C9E—H10J | 112.4 |
C7A—C10A—H10C | 109.6 | C9E—C10B—C7B | 96.8 (9) |
C9C—C10A—H10C | 94.4 | C9E—C10B—H10F | 126.4 |
H10A—C10A—H10C | 109.5 | C7B—C10B—H10F | 108.6 |
H10B—C10A—H10C | 109.5 | C7B—C10B—H10G | 109.9 |
C7A—C10A—H10D | 109.7 | H10F—C10B—H10G | 109.5 |
C9C—C10A—H10D | 110.1 | C9E—C10B—H10H | 104.5 |
H10B—C10A—H10D | 95.6 | C7B—C10B—H10H | 109.9 |
H10C—C10A—H10D | 122.0 | H10F—C10B—H10H | 109.5 |
C7A—C10A—H10E | 109.9 | H10G—C10B—H10H | 109.5 |
C9C—C10A—H10E | 109.1 | C9E—C10B—H10I | 126.4 |
H10A—C10A—H10E | 94.5 | C7B—C10B—H10I | 108.6 |
H10B—C10A—H10E | 122.9 | H10G—C10B—H10I | 109.5 |
H10D—C10A—H10E | 108.2 | H10H—C10B—H10I | 109.5 |
O2A—C11A—O1A | 122.8 (3) | C7B—C10B—H10J | 109.9 |
O2A—C11A—C3A | 122.6 (3) | H10F—C10B—H10J | 109.5 |
O1A—C11A—C3A | 114.5 (3) | H10H—C10B—H10J | 109.5 |
C11B—O1B—H1OB | 109.5 | H10I—C10B—H10J | 109.5 |
O3B—N1B—O4B | 121.7 (3) | C9E—C10B—H10K | 104.5 |
O3B—N1B—C1B | 119.2 (2) | C7B—C10B—H10K | 109.9 |
O4B—N1B—C1B | 119.1 (3) | H10F—C10B—H10K | 109.5 |
C6B—N2B—C7B | 125.3 (3) | H10G—C10B—H10K | 109.5 |
C6B—N2B—H2NB | 111 (2) | H10I—C10B—H10K | 109.5 |
C7B—N2B—H2NB | 123 (2) | H10J—C10B—H10K | 109.5 |
C2B—C1B—C6B | 121.4 (3) | C9E—C10B—H10L | 115.1 |
C2B—C1B—N1B | 116.7 (3) | C7B—C10B—H10L | 111.1 |
C6B—C1B—N1B | 121.9 (3) | H10G—C10B—H10L | 98.5 |
C3B—C2B—C1B | 120.5 (3) | H10H—C10B—H10L | 117.3 |
C3B—C2B—H2BA | 119.7 | H10J—C10B—H10L | 98.5 |
C1B—C2B—H2BA | 119.7 | H10K—C10B—H10L | 117.3 |
C2B—C3B—C4B | 119.3 (3) | C9E—C10B—H10M | 111.4 |
C2B—C3B—C11B | 120.1 (3) | C7B—C10B—H10M | 112.3 |
C4B—C3B—C11B | 120.6 (3) | H10F—C10B—H10M | 101.5 |
C5B—C4B—C3B | 120.5 (3) | H10G—C10B—H10M | 114.7 |
C5B—C4B—H4BA | 119.7 | H10I—C10B—H10M | 101.5 |
C3B—C4B—H4BA | 119.7 | H10J—C10B—H10M | 114.7 |
C4B—C5B—C6B | 122.4 (3) | H10L—C10B—H10M | 109.6 |
C4B—C5B—H5BA | 118.8 | O2B—C11B—O1B | 124.0 (3) |
C6B—C5B—H5BA | 118.8 | O2B—C11B—C3B | 119.9 (3) |
N2B—C6B—C5B | 120.3 (3) | O1B—C11B—C3B | 116.1 (3) |
N2B—C6B—C1B | 123.9 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1A—H1OA···O2Ai | 0.82 | 1.83 | 2.646 (3) | 175 |
O1B—H1OB···O2Bii | 0.82 | 1.80 | 2.618 (3) | 172 |
N2A—H2NA···O4A | 0.80 (3) | 1.97 (3) | 2.630 (4) | 139 (3) |
N2B—H2NB···O4B | 0.88 (3) | 1.90 (3) | 2.627 (4) | 139 (3) |
C5A—H5AA···O3Aiii | 0.93 | 2.44 | 3.316 (4) | 157 |
C5B—H5BA···O3Biv | 0.93 | 2.47 | 3.253 (4) | 142 |
Symmetry codes: (i) −x+1, −y+2, −z+2; (ii) −x+2, −y+1, −z+1; (iii) −x+1, y−1/2, −z+3/2; (iv) −x+2, y+1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | C11H14N2O4 |
Mr | 238.24 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 110 |
a, b, c (Å) | 6.9722 (4), 15.7250 (8), 21.8111 (11) |
β (°) | 101.896 (3) |
V (Å3) | 2340.0 (2) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.57 × 0.08 × 0.04 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.922, 0.995 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 23247, 4600, 3357 |
Rint | 0.049 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.070, 0.165, 1.08 |
No. of reflections | 4600 |
No. of parameters | 335 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.56, −0.60 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O1A—H1OA···O2Ai | 0.8200 | 1.8300 | 2.646 (3) | 175.00 |
O1B—H1OB···O2Bii | 0.8200 | 1.8000 | 2.618 (3) | 172.00 |
N2A—H2NA···O4A | 0.80 (3) | 1.97 (3) | 2.630 (4) | 139 (3) |
N2B—H2NB···O4B | 0.88 (3) | 1.90 (3) | 2.627 (4) | 139 (3) |
C5A—H5AA···O3Aiii | 0.9300 | 2.4400 | 3.316 (4) | 157.00 |
C5B—H5BA···O3Biv | 0.9300 | 2.4700 | 3.253 (4) | 142.00 |
Symmetry codes: (i) −x+1, −y+2, −z+2; (ii) −x+2, −y+1, −z+1; (iii) −x+1, y−1/2, −z+3/2; (iv) −x+2, y+1/2, −z+3/2. |
Acknowledgements
SNNB, ASAR and SAH acknowledge Universiti Sains Malaysia (USM) for a University Research Grant for the synthetic chemistry work (No. 1001/PFARMASI/815026). SNNB thanks USM for a Postdoctoral Research Fellowship. HKF thanks USM for a Research University Golden Goose Grant (No. 1001/PFIZIK/811012). CSY thanks the Malaysian Government and USM for the award of the post of Research Officer under the Science Fund Grant (No. 305/PFIZIK/613312).
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The synthesis of bioactive heterocycles such as substituted benzimidazolones, benzimidazoles and 1-substituted benzotriazole carboxylic acids, (Burgey et al., 2006; Ishida et al., 2006; Semple et al., 2006), can be achieved from nitro benzoic acid derivatives as the starting materials. As part of our ongoing synthesis programme, (Narendra Babu et al., 2009), we have synthesized the title compound as an intermediate and herein present its crystal structure.
The asymmetric unit of title compound (I), (Figs. 1 and 2), consists of two crystallographically independent molecule A and B. Intramolecular N2A—H2NA···O4A and N2B—H2NB···O4B hydrogen bonds generate S(6) ring motifs (Bernstein et al., 1995). The nitro group for molecule A is almost planar with the benzene ring whereas the nitro group for molecule B is essentially coplanar with benzene ring [dihedral angle, A = 4.5 (3)° and B = 0.5 (3)°].
In molecule A there is disorder of the butylamino group which corresponds to an approximate 180° rotation about the N-C(H) bond forming two sites with refined occupancies of 0.722 (6) and 0.278 (6). Molecule B is similarly disordered but in addition there is further rotational disorder about the C(H)-C(H2) bond giving a ratio of occupancies for three components of 0.42:0.35:0.23 (see Fig. 1).
In the crystal structure, intermolecular O—H···O hydrogen bonds (see Table 1) link molecules into centrosymmetric dimers (Fig. 3) to generate R22(8) ring motifs (Bernstein et al., 1995). The crystal structure is further stabilized by weak intermolecular C—H···O interactions (Table 1).