organic compounds
(E)-1-(4-Bromophenyl)ethan-1-one semicarbazone
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bDepartment of Chemistry, National Institute of Technology-Karnataka, Surathkal, Mangalore 575 025, India
*Correspondence e-mail: hkfun@usm.my
In the title compound, C9H10BrN3O, the hydrazone portion and aliphatic chain are essentially coplanar [maximum deviation 0.057 (15) Å] and the mean plane makes a dihedral angle of 70.9 (6)° with the benzene ring. The main feature of the is the intermolecular N—H⋯O hydrogen bond, which links molecules into zigzag chains along the a axis. These chains are further stacked along the b axis. The features non-classical intermolecular C—H⋯O interactions. The crystal studied was a nonmerohedral twin, with a twin ratio of 0.505 (1):0.495 (1).
Related literature
For general background and applications of semicarbazone derivatives, see: Chandra & Gupta (2005); Jain et al. (2002); Pilgram (1978); Warren et al. (1977); Yogeeswari et al. (2004). For the preparation, see: Furniss et al. (1978). For bond-length data, see: Allen et al. (1987). For a related structure, see: Fun et al. (2009). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536809022284/ng2596sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809022284/ng2596Isup2.hkl
0.57 g (5.11 mmol) of semicarbazide hydrochloride and 0.54 g (6.60 mmol) of crystallized sodium acetate was dissolved in 10 ml of water (Furniss et al., 1978). The reaction mixture was stirred at room temperature for 10 minutes. 1 g (5.02 mmol) 4-Bromoacetophenone was added to this and shaken well. A little alcohol was added to dissolve the turbidity. It was shaken for 10 more minutes and allowed to stand. The semicarbazone crystallizes on standing for 6 h. The separated crystals were filtered, washed with cold water and recrystallized from alcohol. Yield was found to be 1.158 g, 90.05 %. M.p. 479-481 K.
The H-atoms bound to N2 and N3 was located from the difference Fourier map and refined freely. The rest of the hydrogen atoms were placed in calculated positions, with C—H = 0.93 Å, Uiso = 1.2Ueq(C) for aromatic, and C—H = 0.96 Å, Uiso = 1.5Ueq(C) for CH3 atom. A rotating group model was used for the methyl group. The N1—N2 bond was restrained with a N—N bond distance of 1.37 (1) Å. The crystal studied was a twin with the refined BASF parameter of 0.495 (1).
The final difference Fourier map had a peak/hole in the vicnity of Br1.
Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C9H10BrN3O | F(000) = 512 |
Mr = 256.11 | Dx = 1.701 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 3514 reflections |
a = 17.6700 (8) Å | θ = 3.0–28.2° |
b = 7.3426 (4) Å | µ = 4.08 mm−1 |
c = 7.9082 (4) Å | T = 100 K |
β = 102.953 (3)° | Block, colourless |
V = 999.93 (9) Å3 | 0.22 × 0.12 × 0.08 mm |
Z = 4 |
Bruker SMART APEXII CCD area-detector diffractometer | 2945 independent reflections |
Radiation source: fine-focus sealed tube | 2105 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.053 |
ϕ and ω scans | θmax = 30.2°, θmin = 1.2° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −24→24 |
Tmin = 0.466, Tmax = 0.733 | k = −10→10 |
12017 measured reflections | l = −11→11 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.080 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.249 | H-atom parameters constrained |
S = 1.16 | w = 1/[σ2(Fo2) + (0.1217P)2 + 9.4338P] where P = (Fo2 + 2Fc2)/3 |
2945 reflections | (Δ/σ)max < 0.000 |
129 parameters | Δρmax = 3.03 e Å−3 |
1 restraint | Δρmin = −1.11 e Å−3 |
C9H10BrN3O | V = 999.93 (9) Å3 |
Mr = 256.11 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 17.6700 (8) Å | µ = 4.08 mm−1 |
b = 7.3426 (4) Å | T = 100 K |
c = 7.9082 (4) Å | 0.22 × 0.12 × 0.08 mm |
β = 102.953 (3)° |
Bruker SMART APEXII CCD area-detector diffractometer | 2945 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 2105 reflections with I > 2σ(I) |
Tmin = 0.466, Tmax = 0.733 | Rint = 0.053 |
12017 measured reflections |
R[F2 > 2σ(F2)] = 0.080 | 1 restraint |
wR(F2) = 0.249 | H-atom parameters constrained |
S = 1.16 | Δρmax = 3.03 e Å−3 |
2945 reflections | Δρmin = −1.11 e Å−3 |
129 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Br1 | 0.03467 (5) | 0.43707 (10) | 0.2675 (2) | 0.0212 (2) | |
N3 | 0.4198 (6) | 0.1238 (13) | 0.8352 (16) | 0.034 (2) | |
H3A | 0.4430 | 0.0237 | 0.8214 | 0.041* | |
H3B | 0.3772 | 0.1214 | 0.8704 | 0.041* | |
N1 | 0.3450 (5) | 0.4205 (11) | 0.899 (2) | 0.039 (3) | |
N2 | 0.4105 (5) | 0.4401 (11) | 0.8290 (14) | 0.027 (2) | |
H2B | 0.4257 | 0.5459 | 0.8038 | 0.032* | |
O1 | 0.5113 (4) | 0.2902 (11) | 0.7512 (13) | 0.032 (2) | |
C1 | 0.1856 (7) | 0.6630 (14) | 0.6881 (14) | 0.026 (2) | |
H1A | 0.1894 | 0.7729 | 0.7479 | 0.032* | |
C2 | 0.1231 (6) | 0.6387 (14) | 0.5429 (16) | 0.027 (2) | |
H2A | 0.0876 | 0.7317 | 0.5050 | 0.032* | |
C3 | 0.1165 (6) | 0.4722 (15) | 0.4594 (13) | 0.023 (2) | |
C4 | 0.1698 (7) | 0.3367 (14) | 0.5184 (14) | 0.025 (2) | |
H4A | 0.1638 | 0.2236 | 0.4642 | 0.030* | |
C5 | 0.2310 (7) | 0.3651 (14) | 0.6544 (16) | 0.028 (2) | |
H5A | 0.2671 | 0.2725 | 0.6885 | 0.033* | |
C6 | 0.2409 (6) | 0.5321 (14) | 0.7448 (17) | 0.027 (2) | |
C7 | 0.3094 (5) | 0.5625 (12) | 0.911 (3) | 0.0244 (19) | |
C8 | 0.4503 (7) | 0.2840 (13) | 0.8017 (14) | 0.025 (2) | |
C9 | 0.3368 (5) | 0.7556 (12) | 0.914 (3) | 0.030 (2) | |
H9A | 0.3911 | 0.7610 | 0.9682 | 0.045* | |
H9B | 0.3081 | 0.8292 | 0.9779 | 0.045* | |
H9C | 0.3288 | 0.8004 | 0.7971 | 0.045* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0269 (4) | 0.0173 (4) | 0.0201 (8) | −0.0037 (3) | 0.0067 (17) | −0.0023 (5) |
N3 | 0.039 (5) | 0.013 (4) | 0.057 (7) | 0.000 (4) | 0.026 (5) | −0.004 (5) |
N1 | 0.019 (3) | 0.015 (4) | 0.083 (11) | 0.001 (3) | 0.011 (6) | −0.004 (6) |
N2 | 0.033 (5) | 0.009 (4) | 0.043 (6) | 0.001 (3) | 0.018 (4) | −0.004 (4) |
O1 | 0.029 (3) | 0.037 (5) | 0.038 (4) | −0.003 (3) | 0.021 (4) | −0.001 (5) |
C1 | 0.043 (6) | 0.013 (4) | 0.023 (5) | −0.003 (4) | 0.008 (5) | −0.004 (4) |
C2 | 0.023 (5) | 0.019 (4) | 0.039 (6) | −0.005 (4) | 0.008 (5) | −0.003 (5) |
C3 | 0.020 (4) | 0.034 (6) | 0.016 (4) | −0.001 (4) | 0.008 (4) | 0.005 (4) |
C4 | 0.035 (5) | 0.019 (5) | 0.019 (5) | −0.008 (4) | 0.002 (4) | 0.004 (4) |
C5 | 0.033 (5) | 0.013 (4) | 0.034 (6) | 0.000 (4) | 0.004 (5) | −0.005 (4) |
C6 | 0.024 (5) | 0.020 (5) | 0.040 (6) | 0.000 (4) | 0.014 (5) | 0.004 (4) |
C7 | 0.021 (3) | 0.016 (3) | 0.036 (6) | 0.003 (3) | 0.005 (8) | −0.016 (6) |
C8 | 0.046 (6) | 0.007 (4) | 0.024 (5) | 0.007 (4) | 0.009 (5) | −0.002 (4) |
C9 | 0.022 (4) | 0.011 (3) | 0.060 (8) | −0.003 (3) | 0.018 (8) | 0.009 (8) |
Br1—C3 | 1.865 (10) | C2—C3 | 1.382 (16) |
N3—C8 | 1.344 (14) | C2—H2A | 0.9300 |
N3—H3A | 0.8600 | C3—C4 | 1.378 (15) |
N3—H3B | 0.8600 | C4—C5 | 1.359 (15) |
N1—C7 | 1.233 (11) | C4—H4A | 0.9300 |
N1—N2 | 1.397 (9) | C5—C6 | 1.410 (15) |
N2—C8 | 1.387 (12) | C5—H5A | 0.9300 |
N2—H2B | 0.8600 | C6—C7 | 1.59 (2) |
O1—C8 | 1.232 (13) | C7—C9 | 1.496 (12) |
C1—C6 | 1.373 (15) | C9—H9A | 0.9600 |
C1—C2 | 1.415 (16) | C9—H9B | 0.9600 |
C1—H1A | 0.9300 | C9—H9C | 0.9600 |
C8—N3—H3A | 120.0 | C4—C5—C6 | 121.4 (11) |
C8—N3—H3B | 120.0 | C4—C5—H5A | 119.3 |
H3A—N3—H3B | 120.0 | C6—C5—H5A | 119.3 |
C7—N1—N2 | 115.2 (10) | C1—C6—C5 | 116.4 (11) |
C8—N2—N1 | 118.1 (8) | C1—C6—C7 | 121.7 (9) |
C8—N2—H2B | 121.0 | C5—C6—C7 | 121.8 (9) |
N1—N2—H2B | 121.0 | N1—C7—C9 | 129.3 (10) |
C6—C1—C2 | 123.1 (10) | N1—C7—C6 | 97.0 (12) |
C6—C1—H1A | 118.5 | C9—C7—C6 | 109.2 (13) |
C2—C1—H1A | 118.5 | O1—C8—N3 | 121.0 (9) |
C3—C2—C1 | 117.8 (10) | O1—C8—N2 | 122.1 (9) |
C3—C2—H2A | 121.1 | N3—C8—N2 | 116.9 (10) |
C1—C2—H2A | 121.1 | C7—C9—H9A | 109.5 |
C4—C3—C2 | 119.9 (10) | C7—C9—H9B | 109.5 |
C4—C3—Br1 | 121.5 (8) | H9A—C9—H9B | 109.5 |
C2—C3—Br1 | 118.6 (8) | C7—C9—H9C | 109.5 |
C5—C4—C3 | 121.3 (10) | H9A—C9—H9C | 109.5 |
C5—C4—H4A | 119.4 | H9B—C9—H9C | 109.5 |
C3—C4—H4A | 119.4 | ||
C7—N1—N2—C8 | −176.1 (14) | C4—C5—C6—C7 | 176.3 (13) |
C6—C1—C2—C3 | 2.4 (17) | N2—N1—C7—C9 | −20 (3) |
C1—C2—C3—C4 | 0.1 (15) | N2—N1—C7—C6 | 101.6 (13) |
C1—C2—C3—Br1 | −179.9 (8) | C1—C6—C7—N1 | −174.6 (12) |
C2—C3—C4—C5 | −2.4 (16) | C5—C6—C7—N1 | 9.4 (17) |
Br1—C3—C4—C5 | 177.5 (9) | C1—C6—C7—C9 | −38.6 (17) |
C3—C4—C5—C6 | 2.4 (18) | C5—C6—C7—C9 | 145.3 (12) |
C2—C1—C6—C5 | −2.4 (17) | N1—N2—C8—O1 | −175.3 (12) |
C2—C1—C6—C7 | −178.7 (12) | N1—N2—C8—N3 | 3.9 (16) |
C4—C5—C6—C1 | 0.0 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2B···O1i | 0.86 | 2.21 | 3.052 (12) | 168 |
N3—H3A···O1ii | 0.86 | 2.03 | 2.885 (13) | 171 |
C9—H9A···O1iii | 0.96 | 2.51 | 3.34 (2) | 144 |
Symmetry codes: (i) −x+1, y+1/2, −z+3/2; (ii) −x+1, y−1/2, −z+3/2; (iii) −x+1, −y+1, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C9H10BrN3O |
Mr | 256.11 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 17.6700 (8), 7.3426 (4), 7.9082 (4) |
β (°) | 102.953 (3) |
V (Å3) | 999.93 (9) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 4.08 |
Crystal size (mm) | 0.22 × 0.12 × 0.08 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.466, 0.733 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12017, 2945, 2105 |
Rint | 0.053 |
(sin θ/λ)max (Å−1) | 0.707 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.080, 0.249, 1.16 |
No. of reflections | 2945 |
No. of parameters | 129 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 3.03, −1.11 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2B···O1i | 0.8600 | 2.2100 | 3.052 (12) | 168.00 |
N3—H3A···O1ii | 0.8600 | 2.0300 | 2.885 (13) | 171.00 |
C9—H9A···O1iii | 0.9600 | 2.5100 | 3.34 (2) | 144.00 |
Symmetry codes: (i) −x+1, y+1/2, −z+3/2; (ii) −x+1, y−1/2, −z+3/2; (iii) −x+1, −y+1, −z+2. |
Footnotes
‡Thomson Reuters ResearcherID: A-3561-2009.
Acknowledgements
HKF and JHG thank Universiti Sains Malaysia for the Research University Golden Goose Grant (No. 1001/PFIZIK/811012). JHG thanks the Malaysia Government and Universiti Sains Malaysia for a student assistantship under the Science Fund (Grant No. 305/PFIZIK/613312). AMI is grateful to the Head of the Department of Chemistry and the Director, NITK, Surathkal, India, for providing research facilities.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
In organic chemistry, a semicarbazone is a derivative of an aldehyde or ketone formed by a condensation between a ketone or aldehyde and semicarbazide. Semicarbazones find immerse applications in the field of synthetic chemistry, such as in medicinal chemistry (Warren et al., 1977), organometalics (Chandra & Gupta, 2005), polymers (Jain et al., 2002) and herbicides (Pilgram, 1978). 4-Sulphamoylphenyl semicarbazones were synthesized and were found to posses anticonvulsant activity (Yogeeswari et al., 2004). We hereby report the crystal structure of the semicarbazone of commercial importance keeping in view of their synthetic importance.
The bond lengths (Allen et al., 1987) and angles in the molecule (Fig. 1) are within normal ranges and are comparable to a closely related structure (Fun et al., 2009). Atoms C7, C8, N1, N2, N3 and O1 lie on the same plane with a maximum deviation of 0.057 (15) Å for atom N1. This plane makes dihedral angle of 70.9 (6)° with the C1-C6 benzene ring.
In the crystal packing (Fig. 2), N3—H3A···O1 hydrogen bonds link the molecules into one-dimensional zig-zag extended chains along the a axis. These chains are further stacked along the b axis and thus forming two-dimensional extended networks parallel to the ab plane. The crystal structure is further stabilized by intermolecular C9—H9A···O1 interactions.