metal-organic compounds
Hydroxonium creatininium bis(pyridine-2,6-dicarboxylato-κ3O2,N,O6)nickelate(II) trihydrate
aYoung Researchers Club, Islamic Azad University, North Tehran Branch, Tehran, Iran, bFaculty of Chemistry, Islamic Azad University, North Tehran Branch, Tehran, Iran, cDepartment of Chemistry, Faculty of Science, Islamic Azad University, Khorramabad Branch, Khorramabad, Iran, and dDepartment of Chemistry, Islamic Azad University, Shahr-e Rey Branch, Tehran, Iran
*Correspondence e-mail: haghabozorg@yahoo.com
The title compound, (C4H8N3O)(H3O)[Ni(C7H3NO4)2]·3H2O, exhibits isotypism with its CoII analogue. All intramolecular distances and angles are similar for the two structures. This applies also for the intermolecular forces, consisting of O—H⋯O and N—H⋯O hydrogen bonds and π–π interactions [with centroid–centroid distances of 3.428 (2) and 3.579 (2) Å], that lead to a cohesion of the structure.
Related literature
For background to proton-transfer agents, see: Aghabozorg, Manteghi et al. (2008); Soleimannejad et al. (2005); Aghabozorg, Ramezanipour et al. (2008). For related structures, see: Moghimi et al. (2004, 2005); Aghabozorg, Motyeian et al. (2008); Aghabozorg, Derikvand et al. (2008). For the isotypic Co compound, see: Aghabozorg et al. (2009).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1998); cell SAINT-Plus (Bruker, 1998); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536809022053/pv2161sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809022053/pv2161Isup2.hkl
The reaction of nickel(II) chloride hexahydrate (59 mg, 0.25 mmol), creatinine, creat, (57 mg, 0.5 mmol) and pyridine-2,6-dicarboxylic acid, pydcH2, (83 mg, 0.5 mmol) in a 1:2:2 molar ratio in aqueous solution resulted in the formation of green, (H3O)(creatH)[Ni(pydc)2]. 3H2O crystals.
The H atoms of water molecules, NH and NH2 groups were located in difference Fourier synthesis. All hydrogen atoms were included in the
in isotropic approximatiom in riding model with distances: N—H (at positions from difference map), C—H = 0.95 (aryl), 0.98 (methyl), 0.99 (methylene) and O—H = 0.85 Å, and the Uiso(H) parameters equal to 1.2 Ueq(C), 1.5 Ueq(O,N), where U(C,O,N) are respectively the equivalent thermal parameters of the C, O and N atoms to which corresponding H atoms were bonded.Data collection: SMART (Bruker, 1998); cell
SAINT-Plus (Bruker, 1998); data reduction: SAINT-Plus (Bruker, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound, thermal ellipsoids are shown at 50% probability level. | |
Fig. 2. Unit cell packing diagram of the title compound, hydrogen bonds are shown as dashed lines and H-atoms not involved in H-bonds have been excluded. | |
Fig. 3. π-π Stacking interaction between two aromatic rings of (pydc)2– units. |
(C4H8N3O)(H3O)[Ni(C7H3NO4)2]·3H2O | Z = 2 |
Mr = 576.12 | F(000) = 596 |
Triclinic, P1 | Dx = 1.678 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.1466 (9) Å | Cell parameters from 1838 reflections |
b = 10.7420 (12) Å | θ = 2.8–24.2° |
c = 13.5061 (15) Å | µ = 0.93 mm−1 |
α = 74.890 (2)° | T = 120 K |
β = 89.944 (2)° | Prism, green |
γ = 87.564 (3)° | 0.18 × 0.14 × 0.12 mm |
V = 1140.0 (2) Å3 |
Bruker SMART 1000 CCD area-detector diffractometer | 5404 independent reflections |
Radiation source: fine-focus sealed tube | 3827 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.046 |
ω scans | θmax = 28.0°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −10→10 |
Tmin = 0.803, Tmax = 0.896 | k = −14→14 |
11509 measured reflections | l = −17→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.053 | Hydrogen site location: mixed |
wR(F2) = 0.134 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0405P)2 + 2.37P] where P = (Fo2 + 2Fc2)/3 |
5404 reflections | (Δ/σ)max = 0.001 |
335 parameters | Δρmax = 0.84 e Å−3 |
0 restraints | Δρmin = −0.37 e Å−3 |
(C4H8N3O)(H3O)[Ni(C7H3NO4)2]·3H2O | γ = 87.564 (3)° |
Mr = 576.12 | V = 1140.0 (2) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.1466 (9) Å | Mo Kα radiation |
b = 10.7420 (12) Å | µ = 0.93 mm−1 |
c = 13.5061 (15) Å | T = 120 K |
α = 74.890 (2)° | 0.18 × 0.14 × 0.12 mm |
β = 89.944 (2)° |
Bruker SMART 1000 CCD area-detector diffractometer | 5404 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | 3827 reflections with I > 2σ(I) |
Tmin = 0.803, Tmax = 0.896 | Rint = 0.046 |
11509 measured reflections |
R[F2 > 2σ(F2)] = 0.053 | 0 restraints |
wR(F2) = 0.134 | H-atom parameters constrained |
S = 1.00 | Δρmax = 0.84 e Å−3 |
5404 reflections | Δρmin = −0.37 e Å−3 |
335 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Ni1 | 0.26883 (5) | 0.07342 (4) | 0.22939 (3) | 0.01905 (13) | |
O1 | 0.4241 (3) | −0.0881 (2) | 0.23014 (17) | 0.0225 (5) | |
O2 | 0.4819 (3) | −0.2302 (2) | 0.13848 (18) | 0.0245 (5) | |
O3 | 0.0829 (3) | 0.2229 (2) | 0.16633 (17) | 0.0211 (5) | |
O4 | −0.0572 (3) | 0.3100 (2) | 0.01983 (17) | 0.0254 (5) | |
O5 | 0.4573 (3) | 0.2152 (2) | 0.18788 (17) | 0.0220 (5) | |
O6 | 0.6101 (3) | 0.3404 (2) | 0.25748 (18) | 0.0271 (5) | |
O7 | 0.1100 (3) | −0.0493 (2) | 0.33115 (17) | 0.0228 (5) | |
O8 | 0.0881 (3) | −0.1386 (2) | 0.50037 (18) | 0.0271 (5) | |
N1 | 0.2282 (3) | 0.0494 (2) | 0.0918 (2) | 0.0165 (5) | |
N2 | 0.3261 (3) | 0.1077 (2) | 0.3616 (2) | 0.0161 (5) | |
C1 | 0.3098 (4) | −0.0458 (3) | 0.0640 (2) | 0.0175 (6) | |
C2 | 0.2950 (4) | −0.0601 (3) | −0.0352 (2) | 0.0201 (7) | |
H2A | 0.3515 | −0.1291 | −0.0547 | 0.024* | |
C3 | 0.1952 (4) | 0.0295 (3) | −0.1048 (3) | 0.0221 (7) | |
H3A | 0.1842 | 0.0227 | −0.1732 | 0.027* | |
C4 | 0.1118 (4) | 0.1285 (3) | −0.0749 (2) | 0.0208 (7) | |
H4A | 0.0440 | 0.1904 | −0.1221 | 0.025* | |
C5 | 0.1297 (4) | 0.1347 (3) | 0.0252 (2) | 0.0174 (6) | |
C6 | 0.4140 (4) | −0.1286 (3) | 0.1508 (2) | 0.0189 (7) | |
C7 | 0.0456 (4) | 0.2315 (3) | 0.0738 (2) | 0.0203 (7) | |
C8 | 0.4375 (4) | 0.1947 (3) | 0.3651 (2) | 0.0175 (6) | |
C9 | 0.4809 (4) | 0.2192 (3) | 0.4569 (2) | 0.0207 (7) | |
H9A | 0.5607 | 0.2803 | 0.4591 | 0.025* | |
C10 | 0.4039 (4) | 0.1512 (3) | 0.5470 (2) | 0.0212 (7) | |
H10A | 0.4291 | 0.1671 | 0.6112 | 0.025* | |
C11 | 0.2910 (4) | 0.0610 (3) | 0.5404 (2) | 0.0220 (7) | |
H11A | 0.2383 | 0.0134 | 0.6003 | 0.026* | |
C12 | 0.2554 (4) | 0.0409 (3) | 0.4455 (2) | 0.0168 (6) | |
C13 | 0.5092 (4) | 0.2559 (3) | 0.2620 (2) | 0.0202 (7) | |
C14 | 0.1407 (4) | −0.0569 (3) | 0.4255 (2) | 0.0193 (7) | |
O9 | 0.7005 (3) | 0.4732 (2) | 0.46109 (18) | 0.0300 (6) | |
N3 | 0.8635 (3) | 0.5880 (3) | 0.5417 (2) | 0.0186 (6) | |
H3N | 0.9098 | 0.6328 | 0.4886 | 0.028* | |
N4 | 0.7837 (3) | 0.5199 (3) | 0.7029 (2) | 0.0202 (6) | |
N5 | 0.9931 (3) | 0.6668 (3) | 0.6669 (2) | 0.0213 (6) | |
H5NB | 0.9862 | 0.6905 | 0.7286 | 0.032* | |
H5NA | 1.0388 | 0.7217 | 0.6217 | 0.032* | |
C15 | 0.7458 (4) | 0.5019 (3) | 0.5378 (3) | 0.0217 (7) | |
C16 | 0.8858 (4) | 0.5953 (3) | 0.6403 (2) | 0.0185 (6) | |
C17 | 0.6828 (4) | 0.4533 (3) | 0.6458 (3) | 0.0226 (7) | |
H17A | 0.5647 | 0.4771 | 0.6499 | 0.027* | |
H17B | 0.6996 | 0.3585 | 0.6710 | 0.027* | |
C18 | 0.7939 (5) | 0.4855 (4) | 0.8144 (3) | 0.0288 (8) | |
H18A | 0.8137 | 0.5627 | 0.8376 | 0.043* | |
H18B | 0.8844 | 0.4214 | 0.8376 | 0.043* | |
H18C | 0.6904 | 0.4491 | 0.8429 | 0.043* | |
O1W | 0.9969 (3) | 0.7014 (2) | 0.35667 (18) | 0.0257 (5) | |
H1WA | 0.9086 | 0.6978 | 0.3243 | 0.038* | |
H1WB | 1.0206 | 0.7804 | 0.3398 | 0.038* | |
O2W | 0.7807 (3) | 0.4512 (2) | 0.10606 (19) | 0.0310 (6) | |
H2WA | 0.7267 | 0.3996 | 0.1517 | 0.046* | |
H2WB | 0.8208 | 0.4006 | 0.0723 | 0.046* | |
H2WC | 0.7360 | 0.5102 | 0.0580 | 0.046* | |
O3W | 0.7459 (3) | 0.6405 (3) | 0.2550 (2) | 0.0385 (7) | |
H3WA | 0.7188 | 0.5734 | 0.3000 | 0.058* | |
H3WB | 0.6564 | 0.6811 | 0.2316 | 0.058* | |
O4W | 0.6023 (4) | 0.6403 (3) | 0.0074 (2) | 0.0454 (8) | |
H4WA | 0.5592 | 0.6919 | 0.0393 | 0.068* | |
H4WB | 0.5964 | 0.6694 | −0.0574 | 0.068* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ni1 | 0.0227 (2) | 0.0187 (2) | 0.0156 (2) | −0.00178 (16) | −0.00045 (16) | −0.00419 (16) |
O1 | 0.0295 (13) | 0.0209 (12) | 0.0176 (11) | 0.0012 (10) | 0.0011 (10) | −0.0064 (9) |
O2 | 0.0315 (13) | 0.0208 (12) | 0.0220 (12) | 0.0086 (10) | −0.0026 (10) | −0.0087 (10) |
O3 | 0.0254 (12) | 0.0215 (12) | 0.0168 (11) | 0.0008 (10) | 0.0001 (9) | −0.0062 (9) |
O4 | 0.0287 (13) | 0.0262 (13) | 0.0193 (12) | 0.0074 (10) | −0.0034 (10) | −0.0040 (10) |
O5 | 0.0249 (12) | 0.0263 (12) | 0.0155 (11) | −0.0045 (10) | 0.0021 (9) | −0.0060 (9) |
O6 | 0.0306 (14) | 0.0279 (13) | 0.0220 (12) | −0.0110 (11) | 0.0015 (10) | −0.0038 (10) |
O7 | 0.0294 (13) | 0.0204 (12) | 0.0186 (12) | −0.0068 (10) | 0.0023 (10) | −0.0042 (9) |
O8 | 0.0349 (14) | 0.0231 (12) | 0.0222 (12) | −0.0078 (11) | 0.0060 (10) | −0.0027 (10) |
N1 | 0.0151 (13) | 0.0140 (12) | 0.0186 (13) | −0.0019 (10) | 0.0003 (10) | −0.0009 (10) |
N2 | 0.0170 (13) | 0.0132 (12) | 0.0167 (13) | 0.0031 (10) | 0.0000 (10) | −0.0023 (10) |
C1 | 0.0153 (15) | 0.0184 (15) | 0.0193 (16) | −0.0025 (12) | 0.0014 (12) | −0.0058 (12) |
C2 | 0.0194 (16) | 0.0195 (16) | 0.0226 (17) | −0.0040 (13) | 0.0014 (13) | −0.0071 (13) |
C3 | 0.0268 (18) | 0.0234 (17) | 0.0170 (16) | −0.0025 (14) | −0.0039 (13) | −0.0065 (13) |
C4 | 0.0216 (17) | 0.0204 (16) | 0.0178 (16) | −0.0010 (13) | −0.0030 (13) | −0.0002 (12) |
C5 | 0.0180 (16) | 0.0158 (15) | 0.0178 (15) | −0.0031 (12) | 0.0026 (12) | −0.0031 (12) |
C6 | 0.0182 (16) | 0.0195 (16) | 0.0187 (16) | −0.0032 (13) | 0.0012 (12) | −0.0039 (13) |
C7 | 0.0229 (17) | 0.0175 (15) | 0.0188 (16) | 0.0005 (13) | −0.0011 (13) | −0.0019 (12) |
C8 | 0.0146 (15) | 0.0129 (14) | 0.0233 (16) | 0.0017 (12) | 0.0007 (12) | −0.0021 (12) |
C9 | 0.0204 (16) | 0.0193 (16) | 0.0216 (16) | 0.0027 (13) | −0.0028 (13) | −0.0046 (13) |
C10 | 0.0263 (18) | 0.0221 (16) | 0.0157 (15) | 0.0054 (14) | −0.0040 (13) | −0.0066 (13) |
C11 | 0.0242 (17) | 0.0226 (17) | 0.0164 (16) | 0.0071 (14) | 0.0006 (13) | −0.0012 (13) |
C12 | 0.0148 (15) | 0.0151 (15) | 0.0193 (16) | 0.0040 (12) | 0.0008 (12) | −0.0032 (12) |
C13 | 0.0204 (16) | 0.0196 (16) | 0.0195 (16) | 0.0003 (13) | 0.0004 (13) | −0.0030 (13) |
C14 | 0.0180 (16) | 0.0168 (15) | 0.0232 (17) | 0.0015 (12) | 0.0016 (13) | −0.0055 (13) |
O9 | 0.0341 (14) | 0.0351 (14) | 0.0227 (13) | −0.0115 (12) | −0.0032 (11) | −0.0094 (11) |
N3 | 0.0211 (14) | 0.0209 (14) | 0.0132 (13) | −0.0024 (11) | 0.0022 (10) | −0.0035 (10) |
N4 | 0.0246 (15) | 0.0185 (13) | 0.0165 (13) | −0.0040 (11) | 0.0016 (11) | −0.0021 (11) |
N5 | 0.0267 (15) | 0.0225 (14) | 0.0140 (13) | −0.0018 (12) | −0.0001 (11) | −0.0034 (11) |
C15 | 0.0211 (16) | 0.0188 (16) | 0.0241 (17) | −0.0007 (13) | −0.0012 (13) | −0.0037 (13) |
C16 | 0.0199 (16) | 0.0165 (15) | 0.0179 (16) | 0.0050 (12) | 0.0009 (12) | −0.0032 (12) |
C17 | 0.0220 (17) | 0.0231 (17) | 0.0220 (17) | −0.0050 (14) | −0.0002 (13) | −0.0043 (13) |
C18 | 0.040 (2) | 0.0268 (18) | 0.0181 (17) | −0.0089 (16) | 0.0017 (15) | −0.0015 (14) |
O1W | 0.0261 (13) | 0.0248 (13) | 0.0248 (13) | −0.0066 (10) | −0.0014 (10) | −0.0034 (10) |
O2W | 0.0373 (15) | 0.0255 (13) | 0.0266 (13) | 0.0023 (11) | 0.0072 (11) | −0.0013 (11) |
O3W | 0.0363 (16) | 0.0365 (15) | 0.0345 (15) | −0.0107 (12) | −0.0101 (12) | 0.0067 (12) |
O4W | 0.082 (2) | 0.0346 (15) | 0.0169 (13) | 0.0270 (15) | −0.0012 (13) | −0.0065 (11) |
Ni1—N1 | 1.972 (3) | C10—C11 | 1.384 (5) |
Ni1—N2 | 1.974 (3) | C10—H10A | 0.9500 |
Ni1—O1 | 2.101 (2) | C11—C12 | 1.387 (4) |
Ni1—O7 | 2.121 (2) | C11—H11A | 0.9500 |
Ni1—O3 | 2.163 (2) | C12—C14 | 1.511 (4) |
Ni1—O5 | 2.178 (2) | O9—C15 | 1.218 (4) |
O1—C6 | 1.262 (4) | N3—C16 | 1.368 (4) |
O2—C6 | 1.252 (4) | N3—C15 | 1.370 (4) |
O3—C7 | 1.265 (4) | N3—H3N | 0.8511 |
O4—C7 | 1.251 (4) | N4—C16 | 1.327 (4) |
O5—C13 | 1.272 (4) | N4—C18 | 1.455 (4) |
O6—C13 | 1.240 (4) | N4—C17 | 1.457 (4) |
O7—C14 | 1.280 (4) | N5—C16 | 1.298 (4) |
O8—C14 | 1.243 (4) | N5—H5NB | 0.9334 |
N1—C1 | 1.330 (4) | N5—H5NA | 0.8300 |
N1—C5 | 1.342 (4) | C15—C17 | 1.512 (5) |
N2—C12 | 1.320 (4) | C17—H17A | 0.9900 |
N2—C8 | 1.340 (4) | C17—H17B | 0.9900 |
C1—C2 | 1.394 (4) | C18—H18A | 0.9800 |
C1—C6 | 1.509 (4) | C18—H18B | 0.9800 |
C2—C3 | 1.391 (5) | C18—H18C | 0.9800 |
C2—H2A | 0.9500 | O1W—H1WA | 0.8500 |
C3—C4 | 1.385 (5) | O1W—H1WB | 0.8500 |
C3—H3A | 0.9500 | O2W—H2WA | 0.8499 |
C4—C5 | 1.379 (4) | O2W—H2WB | 0.8500 |
C4—H4A | 0.9500 | O2W—H2WC | 0.8500 |
C5—C7 | 1.509 (4) | O3W—H3WA | 0.8500 |
C8—C9 | 1.382 (5) | O3W—H3WB | 0.8500 |
C8—C13 | 1.505 (4) | O4W—H4WA | 0.8500 |
C9—C10 | 1.408 (5) | O4W—H4WB | 0.8500 |
C9—H9A | 0.9500 | ||
N1—Ni1—N2 | 174.74 (11) | C8—C9—H9A | 120.8 |
N1—Ni1—O1 | 78.05 (10) | C10—C9—H9A | 120.8 |
N2—Ni1—O1 | 101.80 (10) | C11—C10—C9 | 118.8 (3) |
N1—Ni1—O7 | 106.74 (10) | C11—C10—H10A | 120.6 |
N2—Ni1—O7 | 78.49 (10) | C9—C10—H10A | 120.6 |
O1—Ni1—O7 | 89.16 (9) | C10—C11—C12 | 119.3 (3) |
N1—Ni1—O3 | 77.19 (9) | C10—C11—H11A | 120.3 |
N2—Ni1—O3 | 103.06 (9) | C12—C11—H11A | 120.3 |
O1—Ni1—O3 | 155.14 (9) | N2—C12—C11 | 121.0 (3) |
O7—Ni1—O3 | 95.81 (9) | N2—C12—C14 | 112.9 (3) |
N1—Ni1—O5 | 98.03 (9) | C11—C12—C14 | 126.1 (3) |
N2—Ni1—O5 | 76.74 (10) | O6—C13—O5 | 126.9 (3) |
O1—Ni1—O5 | 96.01 (9) | O6—C13—C8 | 117.6 (3) |
O7—Ni1—O5 | 155.22 (9) | O5—C13—C8 | 115.5 (3) |
O3—Ni1—O5 | 89.63 (9) | O8—C14—O7 | 125.9 (3) |
C6—O1—Ni1 | 114.6 (2) | O8—C14—C12 | 118.2 (3) |
C7—O3—Ni1 | 113.8 (2) | O7—C14—C12 | 115.9 (3) |
C13—O5—Ni1 | 114.4 (2) | C16—N3—C15 | 110.3 (3) |
C14—O7—Ni1 | 112.9 (2) | C16—N3—H3N | 126.5 |
C1—N1—C5 | 121.1 (3) | C15—N3—H3N | 123.1 |
C1—N1—Ni1 | 118.9 (2) | C16—N4—C18 | 125.2 (3) |
C5—N1—Ni1 | 119.8 (2) | C16—N4—C17 | 110.3 (3) |
C12—N2—C8 | 121.4 (3) | C18—N4—C17 | 123.3 (3) |
C12—N2—Ni1 | 118.5 (2) | C16—N5—H5NB | 122.1 |
C8—N2—Ni1 | 120.1 (2) | C16—N5—H5NA | 119.2 |
N1—C1—C2 | 120.9 (3) | H5NB—N5—H5NA | 111.9 |
N1—C1—C6 | 111.8 (3) | O9—C15—N3 | 125.8 (3) |
C2—C1—C6 | 127.3 (3) | O9—C15—C17 | 127.5 (3) |
C3—C2—C1 | 118.1 (3) | N3—C15—C17 | 106.7 (3) |
C3—C2—H2A | 120.9 | N5—C16—N4 | 125.9 (3) |
C1—C2—H2A | 120.9 | N5—C16—N3 | 123.6 (3) |
C4—C3—C2 | 120.3 (3) | N4—C16—N3 | 110.6 (3) |
C4—C3—H3A | 119.8 | N4—C17—C15 | 102.1 (3) |
C2—C3—H3A | 119.8 | N4—C17—H17A | 111.3 |
C5—C4—C3 | 118.3 (3) | C15—C17—H17A | 111.3 |
C5—C4—H4A | 120.9 | N4—C17—H17B | 111.3 |
C3—C4—H4A | 120.9 | C15—C17—H17B | 111.3 |
N1—C5—C4 | 121.3 (3) | H17A—C17—H17B | 109.2 |
N1—C5—C7 | 112.1 (3) | N4—C18—H18A | 109.5 |
C4—C5—C7 | 126.6 (3) | N4—C18—H18B | 109.5 |
O2—C6—O1 | 125.8 (3) | H18A—C18—H18B | 109.5 |
O2—C6—C1 | 118.1 (3) | N4—C18—H18C | 109.5 |
O1—C6—C1 | 116.1 (3) | H18A—C18—H18C | 109.5 |
O4—C7—O3 | 126.4 (3) | H18B—C18—H18C | 109.5 |
O4—C7—C5 | 117.0 (3) | H1WA—O1W—H1WB | 105.5 |
O3—C7—C5 | 116.6 (3) | H2WA—O2W—H2WB | 101.4 |
N2—C8—C9 | 121.1 (3) | H2WA—O2W—H2WC | 123.5 |
N2—C8—C13 | 113.2 (3) | H2WB—O2W—H2WC | 100.7 |
C9—C8—C13 | 125.7 (3) | H3WA—O3W—H3WB | 106.0 |
C8—C9—C10 | 118.4 (3) | H4WA—O4W—H4WB | 113.1 |
N1—Ni1—O1—C6 | −3.8 (2) | Ni1—O1—C6—O2 | −172.4 (3) |
N2—Ni1—O1—C6 | −178.4 (2) | Ni1—O1—C6—C1 | 7.4 (3) |
O7—Ni1—O1—C6 | 103.5 (2) | N1—C1—C6—O2 | 171.8 (3) |
O3—Ni1—O1—C6 | 1.4 (4) | C2—C1—C6—O2 | −8.7 (5) |
O5—Ni1—O1—C6 | −100.8 (2) | N1—C1—C6—O1 | −8.1 (4) |
N1—Ni1—O3—C7 | −4.7 (2) | C2—C1—C6—O1 | 171.5 (3) |
N2—Ni1—O3—C7 | 169.9 (2) | Ni1—O3—C7—O4 | −179.7 (3) |
O1—Ni1—O3—C7 | −10.0 (4) | Ni1—O3—C7—C5 | 2.4 (3) |
O7—Ni1—O3—C7 | −110.6 (2) | N1—C5—C7—O4 | −175.4 (3) |
O5—Ni1—O3—C7 | 93.6 (2) | C4—C5—C7—O4 | 4.0 (5) |
N1—Ni1—O5—C13 | 178.0 (2) | N1—C5—C7—O3 | 2.7 (4) |
N2—Ni1—O5—C13 | −2.5 (2) | C4—C5—C7—O3 | −177.9 (3) |
O1—Ni1—O5—C13 | −103.3 (2) | C12—N2—C8—C9 | −1.0 (4) |
O7—Ni1—O5—C13 | −2.2 (4) | Ni1—N2—C8—C9 | −179.2 (2) |
O3—Ni1—O5—C13 | 101.0 (2) | C12—N2—C8—C13 | 177.3 (3) |
N1—Ni1—O7—C14 | 170.5 (2) | Ni1—N2—C8—C13 | −1.0 (3) |
N2—Ni1—O7—C14 | −8.9 (2) | N2—C8—C9—C10 | −0.6 (5) |
O1—Ni1—O7—C14 | 93.3 (2) | C13—C8—C9—C10 | −178.7 (3) |
O3—Ni1—O7—C14 | −111.1 (2) | C8—C9—C10—C11 | 1.4 (5) |
O5—Ni1—O7—C14 | −9.3 (4) | C9—C10—C11—C12 | −0.7 (5) |
O1—Ni1—N1—C1 | −1.0 (2) | C8—N2—C12—C11 | 1.8 (4) |
O7—Ni1—N1—C1 | −86.4 (2) | Ni1—N2—C12—C11 | −179.9 (2) |
O3—Ni1—N1—C1 | −178.7 (2) | C8—N2—C12—C14 | −176.9 (3) |
O5—Ni1—N1—C1 | 93.5 (2) | Ni1—N2—C12—C14 | 1.4 (3) |
O1—Ni1—N1—C5 | −175.6 (2) | C10—C11—C12—N2 | −0.9 (5) |
O7—Ni1—N1—C5 | 98.9 (2) | C10—C11—C12—C14 | 177.5 (3) |
O3—Ni1—N1—C5 | 6.6 (2) | Ni1—O5—C13—O6 | −176.5 (3) |
O5—Ni1—N1—C5 | −81.1 (2) | Ni1—O5—C13—C8 | 2.8 (3) |
O1—Ni1—N2—C12 | −83.0 (2) | N2—C8—C13—O6 | 178.0 (3) |
O7—Ni1—N2—C12 | 3.6 (2) | C9—C8—C13—O6 | −3.9 (5) |
O3—Ni1—N2—C12 | 97.0 (2) | N2—C8—C13—O5 | −1.3 (4) |
O5—Ni1—N2—C12 | −176.5 (2) | C9—C8—C13—O5 | 176.8 (3) |
O1—Ni1—N2—C8 | 95.3 (2) | Ni1—O7—C14—O8 | −165.9 (3) |
O7—Ni1—N2—C8 | −178.0 (2) | Ni1—O7—C14—C12 | 12.2 (3) |
O3—Ni1—N2—C8 | −84.7 (2) | N2—C12—C14—O8 | 168.8 (3) |
O5—Ni1—N2—C8 | 1.8 (2) | C11—C12—C14—O8 | −9.8 (5) |
C5—N1—C1—C2 | −0.3 (4) | N2—C12—C14—O7 | −9.5 (4) |
Ni1—N1—C1—C2 | −174.8 (2) | C11—C12—C14—O7 | 171.9 (3) |
C5—N1—C1—C6 | 179.3 (3) | C16—N3—C15—O9 | −178.9 (3) |
Ni1—N1—C1—C6 | 4.8 (3) | C16—N3—C15—C17 | 2.2 (4) |
N1—C1—C2—C3 | 1.3 (5) | C18—N4—C16—N5 | −11.9 (5) |
C6—C1—C2—C3 | −178.2 (3) | C17—N4—C16—N5 | −179.3 (3) |
C1—C2—C3—C4 | −0.9 (5) | C18—N4—C16—N3 | 167.9 (3) |
C2—C3—C4—C5 | −0.5 (5) | C17—N4—C16—N3 | 0.5 (4) |
C1—N1—C5—C4 | −1.2 (5) | C15—N3—C16—N5 | 178.1 (3) |
Ni1—N1—C5—C4 | 173.3 (2) | C15—N3—C16—N4 | −1.8 (4) |
C1—N1—C5—C7 | 178.2 (3) | C16—N4—C17—C15 | 0.8 (3) |
Ni1—N1—C5—C7 | −7.3 (3) | C18—N4—C17—C15 | −166.9 (3) |
C3—C4—C5—N1 | 1.6 (5) | O9—C15—C17—N4 | 179.4 (3) |
C3—C4—C5—C7 | −177.8 (3) | N3—C15—C17—N4 | −1.8 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3N···O1W | 0.85 | 1.89 | 2.726 (4) | 166 |
N5—H5NB···O3i | 0.93 | 1.96 | 2.861 (4) | 162 |
N5—H5NA···O8ii | 0.83 | 1.97 | 2.777 (4) | 165 |
O1W—H1WA···O3W | 0.85 | 1.84 | 2.662 (3) | 162 |
O1W—H1WB···O7ii | 0.85 | 1.97 | 2.804 (3) | 166 |
O2W—H2WA···O6 | 0.85 | 1.71 | 2.529 (3) | 161 |
O2W—H2WB···O4iii | 0.85 | 1.65 | 2.480 (3) | 165 |
O2W—H2WC···O4W | 0.85 | 1.73 | 2.521 (3) | 155 |
O3W—H3WA···O9 | 0.85 | 2.17 | 2.926 (4) | 148 |
O3W—H3WB···O2iv | 0.85 | 1.94 | 2.765 (4) | 162 |
O4W—H4WA···O2iv | 0.85 | 1.85 | 2.682 (4) | 165 |
O4W—H4WB···O5v | 0.85 | 1.91 | 2.722 (4) | 159 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x+1, y+1, z; (iii) x+1, y, z; (iv) x, y+1, z; (v) −x+1, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | (C4H8N3O)(H3O)[Ni(C7H3NO4)2]·3H2O |
Mr | 576.12 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 120 |
a, b, c (Å) | 8.1466 (9), 10.7420 (12), 13.5061 (15) |
α, β, γ (°) | 74.890 (2), 89.944 (2), 87.564 (3) |
V (Å3) | 1140.0 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.93 |
Crystal size (mm) | 0.18 × 0.14 × 0.12 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 1998) |
Tmin, Tmax | 0.803, 0.896 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11509, 5404, 3827 |
Rint | 0.046 |
(sin θ/λ)max (Å−1) | 0.661 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.053, 0.134, 1.00 |
No. of reflections | 5404 |
No. of parameters | 335 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.84, −0.37 |
Computer programs: SMART (Bruker, 1998), SAINT-Plus (Bruker, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3N···O1W | 0.85 | 1.891 | 2.726 (4) | 166 |
N5—H5NB···O3i | 0.93 | 1.959 | 2.861 (4) | 162 |
N5—H5NA···O8ii | 0.83 | 1.967 | 2.777 (4) | 165 |
O1W—H1WA···O3W | 0.85 | 1.840 | 2.662 (3) | 162 |
O1W—H1WB···O7ii | 0.85 | 1.972 | 2.804 (3) | 166 |
O2W—H2WA···O6 | 0.85 | 1.709 | 2.529 (3) | 161 |
O2W—H2WB···O4iii | 0.85 | 1.648 | 2.480 (3) | 165 |
O2W—H2WC···O4W | 0.85 | 1.726 | 2.521 (3) | 155 |
O3W—H3WA···O9 | 0.85 | 2.169 | 2.926 (4) | 148 |
O3W—H3WB···O2iv | 0.85 | 1.943 | 2.765 (4) | 162 |
O4W—H4WA···O2iv | 0.85 | 1.852 | 2.682 (4) | 165 |
O4W—H4WB···O5v | 0.85 | 1.911 | 2.722 (4) | 159 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x+1, y+1, z; (iii) x+1, y, z; (iv) x, y+1, z; (v) −x+1, −y+1, −z. |
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Two proton transfer compounds have been prepared from creatinine as proton acceptor agent by using pyridine-2,6-dicarboxylic acid (pydcH2) (Moghimi et al., 2004) and 1,10-phenanthroline-9,13-dicarboxylic acid (phendcH2) (Soleimannejad et al., 2005) as proton donor agents. Also three complexes of BiIII (Aghabozorg, Ramezanipour et al., 2008), ZnII (Moghimi et al., 2005) and CrIII (Aghabozorg, Derikvand et al., 2008) have been reported by our research group in which the (creatH)+ fragment was a part of the the crystal structure; more details can be found in our recently published review article (Aghabozorg, Manteghi et al., 2008). We have now synthesized a novel NiII complex, (I), and determined its crystal structure which is presented in this article.
The crystal structure of the title complex, (I), (Fig. 1) contains [Ni(pydc)2]2–, creatininium (creatH)+ as counter-ion, hydroxonium cation, (H3O)+ and three uncoordinated water molecules. The NiII atom is coordinated by two tridentate (pydc)2– groups and the presence of (creatH)+ and (H3O)+ ions balance the negative charge. In the structure of (I), the mean Ni—N and Ni—O bond distances are 1.973 (3) and 2.140 (2) Å, respectively, which are consistent with the corresponding distances reported for similar NiII complexes (Aghabozorg, Motyeian et al., 2008). The N-atoms (N1 and N2) of the two (pydc)2– fragments occupy the axial positions, while O1, O3, O5 and O7 atoms form the equatorial plane. In the anionic complex, the N1—Ni1—N2 angle [174.74 (11)°] deviates slightly from linearity. Therefore, the coordination around the NiII atom is distorted octahedral. In addition, the O1—Ni1—O3 and O5—Ni1—O7 angles [155.14 (9) and 155.22 (9)°] indicate that the four carboxylate groups of the two dianions are oriented in a flattened tetrahedral arrangement around the NiII atom. The angles O1—Ni1—O5, O1—Ni1—O7, O3—Ni1—O5 and O3—Ni1—O7 are 96.01 (9), 89.16 (9), 89.63 (9) and 95.81 (9)°, respectively. On the other hand, the torsion angles O1—Ni1—O7—C14 and O5—Ni1—O3—C7 are 93.3 (2) and 93.6 (2)°, respectively, indicating that two (pydc)2– units are almost perpendicular to each other. The angle between two planes passing aromatic rings of (pydc)2– units is 81.13 (15)°.
A remarkable feature of the title compound is the presence of a large number of O—H···O, N—H···O and C—H···O hydrogen bonds, with D···A distances ranging from 2.480 (3) to 3.415 (4) Å between (creatH)+, (H3O)+ and [Ni(pydc)2]2– fragments and uncoordinated water molecules. The O2W—O2WB···O4iii hydrogen bond with D···A distance of 2.480 (3) Å, is the strongest (details of the hydrogen bonding geometry have been provided in Table 1). These interactions link the fragments to form a three-dimensional network as shown in Fig. 2. In the structure of (I), the space between two layers of [Ni(pydc)2]2– anions is filled with layers of (creatH)+, (H3O)+ cations and uncoordinated water molecules (Fig. 2).
There is noticeable π-π stacking interaction between two aromatic rings of (pydc)2– units, with distances 3.428 (2) Å (1 - x, -y, -z + 1) and 3.579 (2) Å (-x, -y, -z). Also a considerable centrosymmetric C═O···π stacking interactions between C═O groups of carboxylate fragments with aromatic rings of pyridine-2,6-dicarboxylate with distance of 3.488 (1) Å for C═O2···Cg1 (1 - x, -y, -z) [Cg1 is the centroid for N1/C1—C5 ring] are observed in (I) (Fig. 3).