organic compounds
3,4-Dinitro-2,5-bis[4-(trifluoromethyl)phenyl]thiophene
aCardinal Tien College of Healthcare and Management, Taipei 231, Taiwan, and bInstitute of Chemistry, Academia Sinica, Nankang, Taipei, Taiwan
*Correspondence e-mail: pshuang@ctcn.edu.tw
The title compound, C18H8F6N2O4S, is a precursor for the production of low-band-gap conjugated polymers. In the the dihedral angles between the thiophene and benzene rings are 35.90 (8) and 61.94 (8)°, and that between the two benzene rings is 40.18 (8)°. The two nitro groups are twisted with respect to the thiophene ring, the dihedral angles being 53.66 (10) and 31.63 (10)°. Weak intermolecular C—H⋯O hydrogen bonding helps to stabilize the crystal structure.
Experimental
Crystal data
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Refinement
|
Data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536809020443/xu2528sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809020443/xu2528Isup2.hkl
The compound was synthesized by the following procedure. A two-necked round-bottomed flask was charged with Pd(PPh3)4 (280 mg), tributyl(4-(trifluoromethyl)phenyl)stannane (3.26 g, 7.5 mmol), 2,5-dibromo-3,4-dinitrothiophene (1.00 g, 3.0 mmol) and DMF (20 ml), and the reaction mixture stirred under nitrogen and heated at 343 K for 48 h. After cooling, the mixture was diluted with diethyl ether and the organic phase was washed with water and brine. After drying over anhydrous MgSO4 and removing the volatiles, the residue was purified by
using CH2Cl2/n-hexane as followed by recrystallization from CH2Cl2 and hexane to yield 0.7 g (50%) of (I) as a white solid. Crystals suitable for X-ray diffraction were grown from a CH2Cl2 solution layered with hexane at room temperature.H atoms were located geometrically and treated as riding atoms, with C—H = 0.93 Å, and with Uiso(H) = 1.2Ueq(C).
Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).C18H8F6N2O4S | F(000) = 1856 |
Mr = 462.32 | Dx = 1.748 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 3689 reflections |
a = 8.1572 (3) Å | θ = 2.3–21.2° |
b = 17.6371 (6) Å | µ = 0.28 mm−1 |
c = 24.4150 (8) Å | T = 100 K |
V = 3512.6 (2) Å3 | Plate, colourless |
Z = 8 | 0.4 × 0.36 × 0.1 mm |
Bruker SMART CCD area-detector diffractometer | 3098 independent reflections |
Radiation source: fine-focus sealed tube | 1888 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.058 |
ω and ϕ scans | θmax = 25.0°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −8→9 |
Tmin = 0.895, Tmax = 0.973 | k = −20→20 |
22650 measured reflections | l = −29→29 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.030 | H-atom parameters constrained |
wR(F2) = 0.053 | w = 1/[σ2(Fo2) + (0.0222P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.80 | (Δ/σ)max < 0.001 |
3098 reflections | Δρmax = 0.29 e Å−3 |
281 parameters | Δρmin = −0.28 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.00042 (7) |
C18H8F6N2O4S | V = 3512.6 (2) Å3 |
Mr = 462.32 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 8.1572 (3) Å | µ = 0.28 mm−1 |
b = 17.6371 (6) Å | T = 100 K |
c = 24.4150 (8) Å | 0.4 × 0.36 × 0.1 mm |
Bruker SMART CCD area-detector diffractometer | 3098 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | 1888 reflections with I > 2σ(I) |
Tmin = 0.895, Tmax = 0.973 | Rint = 0.058 |
22650 measured reflections |
R[F2 > 2σ(F2)] = 0.030 | 0 restraints |
wR(F2) = 0.053 | H-atom parameters constrained |
S = 0.80 | Δρmax = 0.29 e Å−3 |
3098 reflections | Δρmin = −0.28 e Å−3 |
281 parameters |
Experimental. 1H NMR (CDCl3): 7.77 (d, J = 8.2, 4H), 7.64 (d, J = 8.2, 4H). FAB MS (m/e): 462 (M+). Analysis calculated for C18H8F6N2O4S: C 46.76, H 1.74, N 6.06%; found: C 46.80, H 1.88, N 5.79%. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S | 0.49028 (6) | 0.16607 (3) | 0.10370 (2) | 0.01968 (14) | |
F1 | 0.35605 (13) | 0.58240 (6) | 0.14011 (4) | 0.0308 (3) | |
F2 | 0.55441 (13) | 0.58514 (6) | 0.08266 (5) | 0.0355 (3) | |
F3 | 0.31448 (13) | 0.55311 (6) | 0.05612 (4) | 0.0317 (3) | |
F4 | 0.39559 (15) | −0.25593 (7) | 0.10705 (5) | 0.0436 (4) | |
F5 | 0.59498 (14) | −0.24370 (7) | 0.05129 (5) | 0.0414 (4) | |
F6 | 0.35364 (14) | −0.21365 (7) | 0.02679 (5) | 0.0421 (4) | |
O1 | 0.84762 (17) | 0.29479 (8) | 0.21049 (6) | 0.0336 (4) | |
O2 | 0.72134 (16) | 0.23172 (8) | 0.27348 (6) | 0.0327 (4) | |
O3 | 0.89423 (17) | 0.10570 (8) | 0.23361 (6) | 0.0326 (4) | |
O4 | 0.72044 (15) | 0.01316 (8) | 0.23007 (5) | 0.0227 (4) | |
N2 | 0.75230 (19) | 0.24606 (10) | 0.22593 (7) | 0.0206 (4) | |
N3 | 0.7648 (2) | 0.07741 (10) | 0.21850 (6) | 0.0198 (4) | |
C1 | 0.5770 (2) | 0.23578 (11) | 0.14335 (7) | 0.0154 (5) | |
C2 | 0.6654 (2) | 0.20278 (11) | 0.18389 (8) | 0.0152 (5) | |
C3 | 0.6626 (2) | 0.12295 (11) | 0.18302 (7) | 0.0151 (5) | |
C4 | 0.5731 (2) | 0.09335 (10) | 0.14100 (7) | 0.0145 (5) | |
C11 | 0.5395 (2) | 0.31580 (10) | 0.13231 (8) | 0.0153 (5) | |
C12 | 0.5170 (2) | 0.36726 (11) | 0.17431 (8) | 0.0177 (5) | |
H12 | 0.5278 | 0.3514 | 0.2105 | 0.021* | |
C13 | 0.4788 (2) | 0.44149 (11) | 0.16326 (8) | 0.0182 (5) | |
H13 | 0.4654 | 0.4758 | 0.1918 | 0.022* | |
C14 | 0.4601 (2) | 0.46509 (11) | 0.10993 (8) | 0.0169 (5) | |
C15 | 0.4800 (2) | 0.41410 (11) | 0.06754 (8) | 0.0213 (5) | |
H15 | 0.4659 | 0.4299 | 0.0315 | 0.026* | |
C16 | 0.5204 (2) | 0.34036 (11) | 0.07853 (8) | 0.0203 (5) | |
H16 | 0.5353 | 0.3064 | 0.0498 | 0.024* | |
C17 | 0.4211 (2) | 0.54560 (12) | 0.09785 (9) | 0.0225 (5) | |
C21 | 0.5441 (2) | 0.01459 (11) | 0.12329 (8) | 0.0154 (5) | |
C22 | 0.5951 (2) | −0.00879 (11) | 0.07186 (8) | 0.0191 (5) | |
H22 | 0.6485 | 0.0252 | 0.0488 | 0.023* | |
C23 | 0.5672 (2) | −0.08169 (11) | 0.05477 (8) | 0.0204 (5) | |
H23 | 0.6030 | −0.0973 | 0.0204 | 0.024* | |
C24 | 0.4859 (2) | −0.13201 (11) | 0.08861 (7) | 0.0167 (5) | |
C25 | 0.4314 (2) | −0.10885 (11) | 0.13930 (8) | 0.0182 (5) | |
H25 | 0.3749 | −0.1424 | 0.1618 | 0.022* | |
C26 | 0.4607 (2) | −0.03585 (11) | 0.15652 (8) | 0.0171 (5) | |
H26 | 0.4242 | −0.0203 | 0.1908 | 0.021* | |
C27 | 0.4586 (3) | −0.21090 (12) | 0.06936 (9) | 0.0249 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
S | 0.0205 (3) | 0.0148 (3) | 0.0238 (3) | −0.0007 (3) | −0.0048 (3) | 0.0006 (2) |
F1 | 0.0375 (8) | 0.0209 (7) | 0.0339 (8) | 0.0100 (6) | 0.0032 (6) | −0.0016 (6) |
F2 | 0.0225 (7) | 0.0184 (7) | 0.0654 (9) | −0.0028 (6) | 0.0090 (6) | 0.0108 (6) |
F3 | 0.0315 (7) | 0.0291 (8) | 0.0345 (8) | 0.0085 (6) | −0.0084 (6) | 0.0057 (6) |
F4 | 0.0709 (10) | 0.0208 (7) | 0.0391 (8) | −0.0164 (7) | 0.0180 (7) | −0.0038 (6) |
F5 | 0.0265 (8) | 0.0240 (7) | 0.0738 (10) | 0.0025 (6) | 0.0122 (7) | −0.0171 (7) |
F6 | 0.0447 (8) | 0.0355 (8) | 0.0462 (9) | −0.0044 (6) | −0.0134 (7) | −0.0163 (7) |
O1 | 0.0313 (9) | 0.0344 (10) | 0.0351 (9) | −0.0202 (8) | −0.0052 (8) | 0.0047 (8) |
O2 | 0.0415 (10) | 0.0389 (10) | 0.0176 (9) | −0.0115 (8) | −0.0001 (8) | −0.0018 (8) |
O3 | 0.0219 (9) | 0.0289 (9) | 0.0469 (10) | −0.0039 (7) | −0.0169 (8) | −0.0003 (7) |
O4 | 0.0227 (9) | 0.0182 (8) | 0.0271 (9) | −0.0001 (7) | 0.0004 (7) | 0.0057 (7) |
N2 | 0.0183 (11) | 0.0192 (11) | 0.0244 (12) | 0.0025 (9) | −0.0038 (9) | −0.0018 (9) |
N3 | 0.0189 (11) | 0.0199 (11) | 0.0206 (10) | 0.0016 (9) | 0.0001 (9) | −0.0022 (9) |
C1 | 0.0117 (11) | 0.0178 (12) | 0.0167 (11) | −0.0027 (9) | 0.0006 (9) | −0.0006 (10) |
C2 | 0.0112 (11) | 0.0169 (12) | 0.0177 (12) | −0.0046 (10) | 0.0003 (9) | −0.0032 (10) |
C3 | 0.0109 (12) | 0.0179 (12) | 0.0166 (12) | 0.0014 (10) | 0.0006 (10) | 0.0029 (10) |
C4 | 0.0093 (11) | 0.0180 (12) | 0.0163 (11) | 0.0018 (9) | 0.0024 (9) | 0.0021 (10) |
C11 | 0.0083 (11) | 0.0163 (12) | 0.0213 (12) | −0.0042 (9) | 0.0005 (10) | 0.0001 (10) |
C12 | 0.0155 (12) | 0.0197 (12) | 0.0179 (11) | −0.0020 (10) | −0.0018 (10) | 0.0029 (10) |
C13 | 0.0146 (12) | 0.0175 (12) | 0.0226 (12) | −0.0021 (10) | 0.0025 (10) | −0.0028 (10) |
C14 | 0.0101 (11) | 0.0158 (12) | 0.0248 (12) | −0.0031 (9) | −0.0007 (10) | 0.0020 (10) |
C15 | 0.0216 (12) | 0.0206 (13) | 0.0217 (12) | −0.0025 (11) | −0.0021 (10) | 0.0030 (10) |
C16 | 0.0214 (12) | 0.0175 (12) | 0.0220 (12) | −0.0015 (11) | 0.0013 (10) | −0.0032 (10) |
C17 | 0.0189 (13) | 0.0217 (13) | 0.0268 (14) | 0.0010 (11) | 0.0009 (11) | −0.0012 (11) |
C21 | 0.0106 (12) | 0.0166 (12) | 0.0190 (12) | 0.0024 (9) | −0.0041 (9) | 0.0000 (9) |
C22 | 0.0172 (12) | 0.0196 (13) | 0.0205 (12) | −0.0027 (10) | 0.0001 (10) | 0.0036 (10) |
C23 | 0.0193 (12) | 0.0240 (13) | 0.0179 (12) | −0.0014 (10) | 0.0025 (10) | −0.0039 (10) |
C24 | 0.0109 (11) | 0.0160 (11) | 0.0233 (12) | 0.0002 (10) | −0.0014 (10) | −0.0021 (9) |
C25 | 0.0131 (12) | 0.0182 (12) | 0.0232 (12) | 0.0006 (9) | 0.0016 (10) | 0.0045 (10) |
C26 | 0.0151 (12) | 0.0181 (12) | 0.0182 (11) | 0.0039 (10) | 0.0015 (10) | −0.0002 (9) |
C27 | 0.0233 (14) | 0.0249 (13) | 0.0266 (13) | −0.0003 (11) | 0.0048 (12) | −0.0020 (11) |
S—C4 | 1.7119 (19) | C12—C13 | 1.373 (2) |
S—C1 | 1.7173 (19) | C12—H12 | 0.9300 |
F1—C17 | 1.329 (2) | C13—C14 | 1.375 (2) |
F2—C17 | 1.344 (2) | C13—H13 | 0.9300 |
F3—C17 | 1.346 (2) | C14—C15 | 1.381 (2) |
F4—C27 | 1.320 (2) | C14—C17 | 1.485 (3) |
F5—C27 | 1.330 (2) | C15—C16 | 1.368 (3) |
F6—C27 | 1.347 (2) | C15—H15 | 0.9300 |
O1—N2 | 1.2187 (19) | C16—H16 | 0.9300 |
O2—N2 | 1.2147 (18) | C21—C26 | 1.383 (2) |
O3—N3 | 1.2249 (18) | C21—C22 | 1.386 (2) |
O4—N3 | 1.2226 (18) | C22—C23 | 1.371 (3) |
N2—C2 | 1.462 (2) | C22—H22 | 0.9300 |
N3—C3 | 1.446 (2) | C23—C24 | 1.382 (3) |
C1—C2 | 1.356 (2) | C23—H23 | 0.9300 |
C1—C11 | 1.469 (2) | C24—C25 | 1.377 (2) |
C2—C3 | 1.408 (2) | C24—C27 | 1.485 (3) |
C3—C4 | 1.363 (2) | C25—C26 | 1.375 (2) |
C4—C21 | 1.474 (2) | C25—H25 | 0.9300 |
C11—C12 | 1.382 (2) | C26—H26 | 0.9300 |
C11—C16 | 1.391 (2) | ||
C4—S—C1 | 94.24 (9) | C15—C16—C11 | 120.54 (18) |
O2—N2—O1 | 125.10 (17) | C15—C16—H16 | 119.7 |
O2—N2—C2 | 117.48 (17) | C11—C16—H16 | 119.7 |
O1—N2—C2 | 117.40 (17) | F1—C17—F2 | 106.49 (16) |
O4—N3—O3 | 124.26 (17) | F1—C17—F3 | 106.33 (16) |
O4—N3—C3 | 118.87 (17) | F2—C17—F3 | 105.24 (16) |
O3—N3—C3 | 116.82 (17) | F1—C17—C14 | 113.47 (17) |
C2—C1—C11 | 131.07 (18) | F2—C17—C14 | 112.20 (16) |
C2—C1—S | 108.86 (14) | F3—C17—C14 | 112.51 (17) |
C11—C1—S | 119.92 (14) | C26—C21—C22 | 119.21 (18) |
C1—C2—C3 | 114.15 (17) | C26—C21—C4 | 120.86 (17) |
C1—C2—N2 | 123.10 (18) | C22—C21—C4 | 119.88 (17) |
C3—C2—N2 | 122.72 (18) | C23—C22—C21 | 120.34 (19) |
C4—C3—C2 | 113.78 (17) | C23—C22—H22 | 119.8 |
C4—C3—N3 | 123.16 (18) | C21—C22—H22 | 119.8 |
C2—C3—N3 | 122.46 (18) | C22—C23—C24 | 120.00 (18) |
C3—C4—C21 | 131.90 (18) | C22—C23—H23 | 120.0 |
C3—C4—S | 108.95 (14) | C24—C23—H23 | 120.0 |
C21—C4—S | 119.11 (14) | C25—C24—C23 | 120.11 (18) |
C12—C11—C16 | 118.74 (18) | C25—C24—C27 | 120.92 (18) |
C12—C11—C1 | 121.51 (17) | C23—C24—C27 | 118.97 (18) |
C16—C11—C1 | 119.71 (17) | C26—C25—C24 | 119.76 (18) |
C13—C12—C11 | 120.72 (17) | C26—C25—H25 | 120.1 |
C13—C12—H12 | 119.6 | C24—C25—H25 | 120.1 |
C11—C12—H12 | 119.6 | C25—C26—C21 | 120.55 (18) |
C12—C13—C14 | 119.99 (18) | C25—C26—H26 | 119.7 |
C12—C13—H13 | 120.0 | C21—C26—H26 | 119.7 |
C14—C13—H13 | 120.0 | F4—C27—F5 | 107.18 (18) |
C13—C14—C15 | 119.97 (19) | F4—C27—F6 | 105.61 (16) |
C13—C14—C17 | 120.08 (18) | F5—C27—F6 | 105.08 (16) |
C15—C14—C17 | 119.94 (18) | F4—C27—C24 | 113.67 (17) |
C16—C15—C14 | 120.02 (18) | F5—C27—C24 | 112.76 (17) |
C16—C15—H15 | 120.0 | F6—C27—C24 | 111.91 (18) |
C14—C15—H15 | 120.0 |
D—H···A | D—H | H···A | D···A | D—H···A |
C13—H13···O4i | 0.93 | 2.52 | 3.320 (2) | 144 |
Symmetry code: (i) −x+1, y+1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C18H8F6N2O4S |
Mr | 462.32 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 100 |
a, b, c (Å) | 8.1572 (3), 17.6371 (6), 24.4150 (8) |
V (Å3) | 3512.6 (2) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.28 |
Crystal size (mm) | 0.4 × 0.36 × 0.1 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2001) |
Tmin, Tmax | 0.895, 0.973 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 22650, 3098, 1888 |
Rint | 0.058 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.053, 0.80 |
No. of reflections | 3098 |
No. of parameters | 281 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.29, −0.28 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SAINT (Bruker, 2001, SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
C13—H13···O4i | 0.93 | 2.52 | 3.320 (2) | 144 |
Symmetry code: (i) −x+1, y+1/2, −z+1/2. |
Acknowledgements
This work was partially supported by the Institute of Chemistry, Academia Sinica, and Cardinal Tien College of Healthcare and Management.
References
Bak, B., Christensen, D., Hansen-Nygaard, L. & Rastrup-Andersen, J. (1961). J. Mol. Spectrosc. 7, 58–63. CrossRef CAS Web of Science Google Scholar
Bruker (2001). SMART, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838. CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
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The title compound, (I), has been shown to be an excellent precursor for the production of low band gap conjugated polymers and organic light-emitting devices etc. As indicated in Scheme 2, standard procedures were administrated to synthesize in high yield. The molecular structure is shown in Fig. 1. The double bonds and C—C single bond of (I) are slightly shorter than those of the parent thiophene, while the S—C single bond is slightly elongated (Bak et al., 1961). The dihedral angles between the thiophene (S/C1–C4) and benzene rings (C11–C16 and C21–C26) are 35.90 (8) and 61.94 (8)°, respectively, and that between the two benzene rings is 40.18 (8)°. The two nitro groups are oriented at the thiophene ring with the dihedral angles of 53.66 (10) and 31.63 (10)°, respectively. Intermolecular weak C—H···O hydrogen bonding helps to stabilize the crystal structure (Table 1).