organic compounds
3′,6′-Bis(ethylamino)-2′,7′-dimethyl-2-{[2-[(E)-3,4-methylenedioxybenzylideneamino]ethyl}spiro[isoindoline-1,9′-xanthen]-3-one
aCollege of Chemistry and Chemical Engineering, Xuchang University, Xuchang, Henan Province 461000, People's Republic of China, and bInstitute of Traditional Chinese Materia Medica, Chengde Medical College, Chengde 067000, People's Republic of China
*Correspondence e-mail: xuzhihong1980@yahoo.cn
The title compound, C36H36N4O4, was prepared as a spirolactam ring formation of the rhodamine dye for comparison with a ring-opened form. The xanthene ring system is approximately planar [r.m.s. deviations from planarity = 0.023 (9) Å for the xanthene ring]. The dihedral angles formed by the spirolactam and 1,3-benzodioxole rings with the xanthene ring system are 86.8 (1) and 74.3 (1)°, respectively.
Related literature
et al. (2006); Wu et al. (2007). For the structures of rhodamine derivatives bearing a lactam unit, see: Kwon et al. (2006); Wu et al. (2007); Zhang et al. (2008); Deng et al. (2009); Tian & Peng (2008).
are one of the most widely used fluorophores for labeling and sensing biomolecules, see: KoExperimental
Crystal data
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Data collection: SMART (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536809025872/at2829sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809025872/at2829Isup2.hkl
A portion of the N-(rhodamine-6 G)lactam-ethylenediamine (228 mg, 0.5 mmol) and 3,4-methylenedioxy-benzaldehyde (90 mg, 0.6 mmol) were mixed in fresh distilled acetonitrile (50 ml). The reaction solution was refluxed for 24 h under N2 atmosphere, the reslulting solution was evaporated to 10 ml and allowed to stand at room temperature overnight. The precipitate which appeared next day was filtered and the crude product was purified by recrystallization from acetonitrile to give 264.6 mg of the title compound in 90% yield. Single crystals suitable for X-ray measurements were obtained from acetonitrile solution by slow evaporation at room temperature.
The H atoms attached to C, N and O atoms were placed in geometrically calculated positions (C—H = 0.93–0.97 Å, N—H = 0.86 Å and O—H = 0.82 Å) and refined as riding, with Uiso(H) = 1.2Ueq(C, N) or 1.5Ueq(methyl C, O).
Data collection: SMART (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound, with displacement ellipsoids drawn at 30% probability level. |
C36H36N4O4 | Z = 2 |
Mr = 588.69 | F(000) = 624 |
Triclinic, P1 | Dx = 1.287 Mg m−3 |
a = 9.561 (4) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 12.262 (5) Å | Cell parameters from 2059 reflections |
c = 13.005 (6) Å | θ = 2.6–25.8° |
α = 93.623 (8)° | µ = 0.09 mm−1 |
β = 92.078 (8)° | T = 296 K |
γ = 92.827 (7)° | Block, colorless |
V = 1518.5 (12) Å3 | 0.35 × 0.32 × 0.27 mm |
Bruker SMART CCD area detector diffractometer | 5606 independent reflections |
Radiation source: fine-focus sealed tube | 3838 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.016 |
ϕ and ω scans | θmax = 25.5°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −11→11 |
Tmin = 0.971, Tmax = 0.977 | k = −13→14 |
8102 measured reflections | l = −13→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.069 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.83 | w = 1/[σ2(Fo2)] |
5606 reflections | (Δ/σ)max < 0.001 |
409 parameters | Δρmax = 0.18 e Å−3 |
0 restraints | Δρmin = −0.25 e Å−3 |
C36H36N4O4 | γ = 92.827 (7)° |
Mr = 588.69 | V = 1518.5 (12) Å3 |
Triclinic, P1 | Z = 2 |
a = 9.561 (4) Å | Mo Kα radiation |
b = 12.262 (5) Å | µ = 0.09 mm−1 |
c = 13.005 (6) Å | T = 296 K |
α = 93.623 (8)° | 0.35 × 0.32 × 0.27 mm |
β = 92.078 (8)° |
Bruker SMART CCD area detector diffractometer | 5606 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 3838 reflections with I > 2σ(I) |
Tmin = 0.971, Tmax = 0.977 | Rint = 0.016 |
8102 measured reflections |
R[F2 > 2σ(F2)] = 0.048 | 0 restraints |
wR(F2) = 0.069 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.83 | Δρmax = 0.18 e Å−3 |
5606 reflections | Δρmin = −0.25 e Å−3 |
409 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 1.0868 (2) | 1.00378 (15) | −0.21394 (16) | 0.0673 (7) | |
H1A | 1.0771 | 1.0680 | −0.1692 | 0.101* | |
H1B | 1.0286 | 1.0075 | −0.2752 | 0.101* | |
H1C | 1.1828 | 0.9996 | −0.2323 | 0.101* | |
C2 | 1.0422 (2) | 0.90267 (15) | −0.15876 (15) | 0.0498 (6) | |
H2A | 0.9451 | 0.9067 | −0.1404 | 0.060* | |
H2B | 1.0499 | 0.8378 | −0.2044 | 0.060* | |
C3 | 1.1025 (2) | 0.81736 (15) | 0.00388 (15) | 0.0366 (5) | |
C4 | 1.1834 (2) | 0.82230 (15) | 0.09733 (15) | 0.0384 (5) | |
C5 | 1.15344 (19) | 0.74560 (14) | 0.16730 (14) | 0.0384 (5) | |
H5 | 1.2072 | 0.7484 | 0.2285 | 0.046* | |
C6 | 1.04600 (19) | 0.66337 (14) | 0.15110 (14) | 0.0317 (5) | |
C7 | 0.97058 (19) | 0.66070 (14) | 0.05864 (14) | 0.0333 (5) | |
C8 | 0.99800 (19) | 0.73535 (14) | −0.01517 (14) | 0.0373 (5) | |
H8 | 0.9462 | 0.7303 | −0.0774 | 0.045* | |
C9 | 1.2989 (2) | 0.91013 (15) | 0.11943 (16) | 0.0585 (6) | |
H9A | 1.2585 | 0.9796 | 0.1321 | 0.088* | |
H9B | 1.3576 | 0.9130 | 0.0612 | 0.088* | |
H9C | 1.3540 | 0.8936 | 0.1791 | 0.088* | |
C10 | 1.01167 (19) | 0.58503 (14) | 0.23360 (14) | 0.0329 (5) | |
C11 | 0.89724 (18) | 0.50054 (14) | 0.19301 (14) | 0.0312 (5) | |
C12 | 0.82788 (19) | 0.50651 (14) | 0.09922 (15) | 0.0335 (5) | |
C13 | 0.71638 (19) | 0.43470 (14) | 0.06531 (15) | 0.0382 (5) | |
H13 | 0.6713 | 0.4423 | 0.0018 | 0.046* | |
C14 | 0.6722 (2) | 0.35141 (15) | 0.12629 (15) | 0.0371 (5) | |
C15 | 0.7419 (2) | 0.34181 (15) | 0.22286 (15) | 0.0381 (5) | |
C16 | 0.85157 (19) | 0.41539 (14) | 0.25314 (14) | 0.0381 (5) | |
H16 | 0.8976 | 0.4083 | 0.3164 | 0.046* | |
C17 | 0.6979 (2) | 0.25228 (15) | 0.29171 (16) | 0.0565 (6) | |
H17A | 0.7611 | 0.2543 | 0.3509 | 0.085* | |
H17B | 0.6999 | 0.1824 | 0.2542 | 0.085* | |
H17C | 0.6046 | 0.2633 | 0.3137 | 0.085* | |
C18 | 0.4790 (2) | 0.28637 (16) | −0.00008 (17) | 0.0574 (6) | |
H18A | 0.5399 | 0.2817 | −0.0581 | 0.069* | |
H18B | 0.4365 | 0.3566 | 0.0010 | 0.069* | |
C19 | 0.3653 (2) | 0.19525 (17) | −0.01317 (19) | 0.0815 (8) | |
H19A | 0.4075 | 0.1257 | −0.0159 | 0.122* | |
H19B | 0.3116 | 0.2023 | −0.0760 | 0.122* | |
H19C | 0.3049 | 0.2001 | 0.0441 | 0.122* | |
C20 | 1.14037 (19) | 0.53312 (14) | 0.27722 (14) | 0.0320 (5) | |
C21 | 1.2363 (2) | 0.47156 (14) | 0.22513 (15) | 0.0426 (5) | |
H21 | 1.2253 | 0.4545 | 0.1545 | 0.051* | |
C22 | 1.3490 (2) | 0.43615 (15) | 0.28146 (17) | 0.0507 (6) | |
H22 | 1.4161 | 0.3964 | 0.2478 | 0.061* | |
C23 | 1.3639 (2) | 0.45904 (16) | 0.38774 (17) | 0.0503 (6) | |
H23 | 1.4399 | 0.4338 | 0.4243 | 0.060* | |
C24 | 1.2665 (2) | 0.51889 (15) | 0.43903 (15) | 0.0445 (5) | |
H24 | 1.2754 | 0.5340 | 0.5100 | 0.053* | |
C25 | 1.15530 (19) | 0.55590 (14) | 0.38242 (14) | 0.0332 (5) | |
C26 | 1.0429 (2) | 0.62796 (15) | 0.41636 (16) | 0.0363 (5) | |
C27 | 0.86305 (19) | 0.72948 (14) | 0.32757 (15) | 0.0435 (5) | |
H27A | 0.8826 | 0.7745 | 0.2706 | 0.052* | |
H27B | 0.8758 | 0.7761 | 0.3906 | 0.052* | |
C28 | 0.7120 (2) | 0.68842 (16) | 0.31699 (18) | 0.0617 (7) | |
H28A | 0.6937 | 0.6478 | 0.2510 | 0.074* | |
H28B | 0.6904 | 0.6404 | 0.3714 | 0.074* | |
C29 | 0.5234 (2) | 0.77978 (17) | 0.38177 (17) | 0.0555 (6) | |
H29 | 0.5086 | 0.7161 | 0.4160 | 0.067* | |
C30 | 0.4246 (2) | 0.86726 (16) | 0.39934 (16) | 0.0446 (5) | |
C31 | 0.3017 (2) | 0.84294 (16) | 0.44650 (16) | 0.0523 (6) | |
H31 | 0.2865 | 0.7731 | 0.4692 | 0.063* | |
C32 | 0.1989 (2) | 0.91831 (17) | 0.46180 (17) | 0.0558 (6) | |
H32 | 0.1159 | 0.9008 | 0.4936 | 0.067* | |
C33 | 0.2274 (2) | 1.01850 (17) | 0.42755 (17) | 0.0503 (6) | |
C34 | 0.3508 (2) | 1.04583 (17) | 0.38140 (17) | 0.0491 (6) | |
C35 | 0.4526 (2) | 0.97297 (16) | 0.36598 (16) | 0.0510 (6) | |
H35 | 0.5359 | 0.9920 | 0.3352 | 0.061* | |
C36 | 0.2187 (2) | 1.19285 (17) | 0.38506 (19) | 0.0656 (7) | |
H36A | 0.2343 | 1.2557 | 0.4340 | 0.079* | |
H36B | 0.1657 | 1.2152 | 0.3256 | 0.079* | |
N1 | 0.96564 (15) | 0.64561 (11) | 0.32967 (11) | 0.0345 (4) | |
N4 | 0.62548 (19) | 0.78474 (14) | 0.32444 (15) | 0.0602 (5) | |
N2 | 1.1293 (2) | 0.89507 (15) | −0.06710 (14) | 0.0502 (5) | |
O2 | 0.86117 (13) | 0.58540 (10) | 0.03119 (9) | 0.0419 (4) | |
N3 | 0.56092 (19) | 0.27858 (15) | 0.09466 (16) | 0.0523 (5) | |
O4 | 1.02493 (14) | 0.66716 (10) | 0.50372 (10) | 0.0505 (4) | |
O5 | 0.34971 (16) | 1.15342 (11) | 0.35415 (14) | 0.0777 (5) | |
O6 | 0.14296 (15) | 1.10722 (12) | 0.43125 (13) | 0.0706 (5) | |
H3N | 0.542 (2) | 0.2270 (15) | 0.1319 (15) | 0.061 (8)* | |
H2N | 1.183 (2) | 0.9440 (15) | −0.0491 (15) | 0.057 (8)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0826 (19) | 0.0578 (15) | 0.0642 (17) | −0.0007 (13) | −0.0017 (14) | 0.0310 (13) |
C2 | 0.0529 (15) | 0.0500 (13) | 0.0481 (14) | 0.0009 (11) | −0.0011 (12) | 0.0188 (12) |
C3 | 0.0382 (12) | 0.0331 (11) | 0.0402 (13) | 0.0051 (10) | 0.0070 (10) | 0.0088 (10) |
C4 | 0.0409 (13) | 0.0360 (12) | 0.0385 (13) | −0.0013 (10) | 0.0005 (10) | 0.0051 (10) |
C5 | 0.0401 (13) | 0.0424 (12) | 0.0325 (12) | 0.0044 (10) | −0.0059 (10) | 0.0037 (10) |
C6 | 0.0332 (11) | 0.0316 (11) | 0.0309 (12) | 0.0044 (9) | 0.0010 (9) | 0.0049 (9) |
C7 | 0.0339 (12) | 0.0315 (11) | 0.0350 (12) | 0.0006 (10) | 0.0021 (10) | 0.0059 (10) |
C8 | 0.0384 (12) | 0.0409 (12) | 0.0331 (12) | 0.0024 (10) | −0.0029 (9) | 0.0082 (10) |
C9 | 0.0613 (16) | 0.0547 (14) | 0.0579 (15) | −0.0132 (12) | −0.0068 (12) | 0.0092 (12) |
C10 | 0.0357 (12) | 0.0355 (11) | 0.0283 (11) | 0.0048 (10) | 0.0024 (9) | 0.0050 (9) |
C11 | 0.0341 (12) | 0.0310 (11) | 0.0292 (11) | 0.0049 (9) | 0.0038 (9) | 0.0037 (9) |
C12 | 0.0328 (12) | 0.0328 (11) | 0.0359 (12) | 0.0016 (9) | 0.0051 (10) | 0.0081 (10) |
C13 | 0.0371 (12) | 0.0413 (12) | 0.0364 (12) | 0.0001 (10) | −0.0019 (10) | 0.0072 (10) |
C14 | 0.0320 (12) | 0.0347 (12) | 0.0451 (13) | 0.0025 (10) | 0.0063 (10) | 0.0022 (11) |
C15 | 0.0386 (12) | 0.0358 (12) | 0.0416 (13) | 0.0032 (10) | 0.0099 (10) | 0.0087 (11) |
C16 | 0.0428 (13) | 0.0399 (12) | 0.0332 (12) | 0.0069 (10) | 0.0030 (10) | 0.0094 (10) |
C17 | 0.0577 (15) | 0.0544 (14) | 0.0592 (16) | −0.0044 (12) | 0.0067 (12) | 0.0218 (13) |
C18 | 0.0439 (14) | 0.0501 (14) | 0.0772 (18) | −0.0020 (12) | −0.0104 (13) | 0.0071 (13) |
C19 | 0.0530 (16) | 0.0713 (17) | 0.116 (2) | −0.0197 (14) | −0.0203 (15) | 0.0078 (16) |
C20 | 0.0331 (11) | 0.0314 (11) | 0.0320 (12) | 0.0027 (9) | 0.0007 (9) | 0.0059 (9) |
C21 | 0.0434 (13) | 0.0459 (13) | 0.0393 (13) | 0.0090 (11) | 0.0005 (11) | 0.0042 (11) |
C22 | 0.0435 (14) | 0.0530 (14) | 0.0571 (16) | 0.0172 (11) | 0.0045 (12) | 0.0016 (12) |
C23 | 0.0416 (13) | 0.0510 (14) | 0.0588 (16) | 0.0122 (11) | −0.0117 (12) | 0.0073 (12) |
C24 | 0.0492 (14) | 0.0470 (13) | 0.0370 (13) | 0.0040 (11) | −0.0079 (11) | 0.0058 (11) |
C25 | 0.0361 (12) | 0.0316 (11) | 0.0321 (12) | 0.0000 (9) | −0.0002 (10) | 0.0066 (9) |
C26 | 0.0401 (13) | 0.0342 (12) | 0.0346 (13) | −0.0024 (10) | 0.0028 (10) | 0.0058 (10) |
C27 | 0.0482 (14) | 0.0399 (12) | 0.0443 (13) | 0.0117 (11) | 0.0080 (11) | 0.0056 (10) |
C28 | 0.0477 (15) | 0.0549 (15) | 0.0834 (19) | 0.0167 (12) | 0.0039 (13) | −0.0004 (13) |
C29 | 0.0504 (15) | 0.0536 (14) | 0.0631 (17) | 0.0079 (12) | −0.0034 (13) | 0.0074 (13) |
C30 | 0.0440 (14) | 0.0455 (13) | 0.0439 (14) | 0.0069 (11) | −0.0032 (11) | −0.0007 (11) |
C31 | 0.0527 (15) | 0.0509 (14) | 0.0539 (15) | 0.0005 (12) | 0.0080 (12) | 0.0064 (12) |
C32 | 0.0485 (15) | 0.0524 (15) | 0.0676 (17) | 0.0009 (12) | 0.0174 (13) | 0.0056 (13) |
C33 | 0.0404 (14) | 0.0482 (14) | 0.0617 (16) | 0.0082 (12) | 0.0063 (12) | −0.0073 (12) |
C34 | 0.0462 (15) | 0.0432 (14) | 0.0579 (16) | 0.0008 (12) | 0.0061 (12) | 0.0008 (12) |
C35 | 0.0411 (14) | 0.0562 (15) | 0.0562 (15) | 0.0040 (12) | 0.0075 (11) | 0.0027 (12) |
C36 | 0.0593 (17) | 0.0528 (15) | 0.087 (2) | 0.0119 (13) | 0.0100 (14) | 0.0092 (14) |
N1 | 0.0379 (10) | 0.0356 (9) | 0.0309 (10) | 0.0095 (8) | 0.0021 (8) | 0.0032 (8) |
N4 | 0.0460 (12) | 0.0657 (13) | 0.0716 (15) | 0.0197 (10) | 0.0092 (11) | 0.0086 (11) |
N2 | 0.0550 (13) | 0.0457 (13) | 0.0504 (13) | −0.0078 (11) | −0.0064 (10) | 0.0197 (11) |
O2 | 0.0443 (9) | 0.0436 (8) | 0.0374 (8) | −0.0103 (7) | −0.0093 (7) | 0.0154 (7) |
N3 | 0.0471 (12) | 0.0488 (13) | 0.0613 (14) | −0.0095 (10) | 0.0016 (10) | 0.0159 (12) |
O4 | 0.0631 (10) | 0.0582 (9) | 0.0303 (8) | 0.0083 (8) | 0.0046 (7) | −0.0029 (7) |
O5 | 0.0602 (11) | 0.0485 (10) | 0.1288 (16) | 0.0102 (9) | 0.0299 (11) | 0.0207 (10) |
O6 | 0.0518 (10) | 0.0517 (10) | 0.1091 (15) | 0.0076 (8) | 0.0208 (10) | −0.0020 (10) |
C1—C2 | 1.522 (2) | C19—H19A | 0.9600 |
C1—H1A | 0.9600 | C19—H19B | 0.9600 |
C1—H1B | 0.9600 | C19—H19C | 0.9600 |
C1—H1C | 0.9600 | C20—C25 | 1.380 (2) |
C2—N2 | 1.440 (2) | C20—C21 | 1.385 (2) |
C2—H2A | 0.9700 | C21—C22 | 1.384 (3) |
C2—H2B | 0.9700 | C21—H21 | 0.9300 |
C3—C8 | 1.386 (2) | C22—C23 | 1.394 (3) |
C3—N2 | 1.389 (2) | C22—H22 | 0.9300 |
C3—C4 | 1.413 (3) | C23—C24 | 1.379 (3) |
C4—C5 | 1.377 (2) | C23—H23 | 0.9300 |
C4—C9 | 1.511 (2) | C24—C25 | 1.382 (2) |
C5—C6 | 1.404 (2) | C24—H24 | 0.9300 |
C5—H5 | 0.9300 | C25—C26 | 1.486 (2) |
C6—C7 | 1.377 (2) | C26—O4 | 1.227 (2) |
C6—C10 | 1.519 (2) | C26—N1 | 1.360 (2) |
C7—O2 | 1.3821 (19) | C27—N1 | 1.456 (2) |
C7—C8 | 1.391 (2) | C27—C28 | 1.504 (2) |
C8—H8 | 0.9300 | C27—H27A | 0.9700 |
C9—H9A | 0.9600 | C27—H27B | 0.9700 |
C9—H9B | 0.9600 | C28—N4 | 1.475 (2) |
C9—H9C | 0.9600 | C28—H28A | 0.9700 |
C10—N1 | 1.504 (2) | C28—H28B | 0.9700 |
C10—C20 | 1.521 (2) | C29—N4 | 1.251 (2) |
C10—C11 | 1.525 (2) | C29—C30 | 1.476 (3) |
C11—C12 | 1.375 (2) | C29—H29 | 0.9300 |
C11—C16 | 1.405 (2) | C30—C31 | 1.373 (2) |
C12—O2 | 1.3850 (19) | C30—C35 | 1.409 (2) |
C12—C13 | 1.389 (2) | C31—C32 | 1.393 (3) |
C13—C14 | 1.391 (2) | C31—H31 | 0.9300 |
C13—H13 | 0.9300 | C32—C33 | 1.351 (2) |
C14—N3 | 1.388 (2) | C32—H32 | 0.9300 |
C14—C15 | 1.415 (3) | C33—C34 | 1.380 (2) |
C15—C16 | 1.378 (2) | C33—O6 | 1.386 (2) |
C15—C17 | 1.513 (2) | C34—C35 | 1.365 (3) |
C16—H16 | 0.9300 | C34—O5 | 1.388 (2) |
C17—H17A | 0.9600 | C35—H35 | 0.9300 |
C17—H17B | 0.9600 | C36—O6 | 1.423 (2) |
C17—H17C | 0.9600 | C36—O5 | 1.427 (2) |
C18—N3 | 1.447 (3) | C36—H36A | 0.9700 |
C18—C19 | 1.517 (2) | C36—H36B | 0.9700 |
C18—H18A | 0.9700 | N2—H2N | 0.790 (17) |
C18—H18B | 0.9700 | N3—H3N | 0.836 (17) |
C2—C1—H1A | 109.5 | H19A—C19—H19C | 109.5 |
C2—C1—H1B | 109.5 | H19B—C19—H19C | 109.5 |
H1A—C1—H1B | 109.5 | C25—C20—C21 | 120.81 (18) |
C2—C1—H1C | 109.5 | C25—C20—C10 | 110.72 (16) |
H1A—C1—H1C | 109.5 | C21—C20—C10 | 128.47 (18) |
H1B—C1—H1C | 109.5 | C22—C21—C20 | 117.94 (19) |
N2—C2—C1 | 110.27 (17) | C22—C21—H21 | 121.0 |
N2—C2—H2A | 109.6 | C20—C21—H21 | 121.0 |
C1—C2—H2A | 109.6 | C21—C22—C23 | 121.21 (19) |
N2—C2—H2B | 109.6 | C21—C22—H22 | 119.4 |
C1—C2—H2B | 109.6 | C23—C22—H22 | 119.4 |
H2A—C2—H2B | 108.1 | C24—C23—C22 | 120.3 (2) |
C8—C3—N2 | 121.31 (19) | C24—C23—H23 | 119.8 |
C8—C3—C4 | 119.48 (17) | C22—C23—H23 | 119.8 |
N2—C3—C4 | 119.21 (18) | C23—C24—C25 | 118.43 (19) |
C5—C4—C3 | 118.24 (18) | C23—C24—H24 | 120.8 |
C5—C4—C9 | 121.26 (18) | C25—C24—H24 | 120.8 |
C3—C4—C9 | 120.50 (17) | C20—C25—C24 | 121.28 (18) |
C4—C5—C6 | 123.46 (18) | C20—C25—C26 | 109.15 (17) |
C4—C5—H5 | 118.3 | C24—C25—C26 | 129.45 (19) |
C6—C5—H5 | 118.3 | O4—C26—N1 | 126.31 (19) |
C7—C6—C5 | 116.48 (16) | O4—C26—C25 | 127.68 (19) |
C7—C6—C10 | 122.18 (17) | N1—C26—C25 | 105.97 (17) |
C5—C6—C10 | 121.29 (17) | N1—C27—C28 | 115.78 (15) |
C6—C7—O2 | 123.60 (16) | N1—C27—H27A | 108.3 |
C6—C7—C8 | 122.26 (18) | C28—C27—H27A | 108.3 |
O2—C7—C8 | 114.13 (17) | N1—C27—H27B | 108.3 |
C3—C8—C7 | 120.05 (18) | C28—C27—H27B | 108.3 |
C3—C8—H8 | 120.0 | H27A—C27—H27B | 107.4 |
C7—C8—H8 | 120.0 | N4—C28—C27 | 107.44 (16) |
C4—C9—H9A | 109.5 | N4—C28—H28A | 110.2 |
C4—C9—H9B | 109.5 | C27—C28—H28A | 110.2 |
H9A—C9—H9B | 109.5 | N4—C28—H28B | 110.2 |
C4—C9—H9C | 109.5 | C27—C28—H28B | 110.2 |
H9A—C9—H9C | 109.5 | H28A—C28—H28B | 108.5 |
H9B—C9—H9C | 109.5 | N4—C29—C30 | 125.0 (2) |
N1—C10—C6 | 111.05 (14) | N4—C29—H29 | 117.5 |
N1—C10—C20 | 99.76 (14) | C30—C29—H29 | 117.5 |
C6—C10—C20 | 112.95 (15) | C31—C30—C35 | 120.1 (2) |
N1—C10—C11 | 109.94 (14) | C31—C30—C29 | 118.63 (19) |
C6—C10—C11 | 110.04 (15) | C35—C30—C29 | 121.19 (19) |
C20—C10—C11 | 112.71 (14) | C30—C31—C32 | 122.9 (2) |
C12—C11—C16 | 116.36 (17) | C30—C31—H31 | 118.6 |
C12—C11—C10 | 122.45 (16) | C32—C31—H31 | 118.6 |
C16—C11—C10 | 121.10 (17) | C33—C32—C31 | 115.79 (19) |
C11—C12—O2 | 123.13 (17) | C33—C32—H32 | 122.1 |
C11—C12—C13 | 122.70 (17) | C31—C32—H32 | 122.1 |
O2—C12—C13 | 114.16 (17) | C32—C33—C34 | 122.6 (2) |
C12—C13—C14 | 120.03 (19) | C32—C33—O6 | 127.6 (2) |
C12—C13—H13 | 120.0 | C34—C33—O6 | 109.75 (19) |
C14—C13—H13 | 120.0 | C35—C34—C33 | 122.3 (2) |
N3—C14—C13 | 121.38 (19) | C35—C34—O5 | 128.24 (19) |
N3—C14—C15 | 119.65 (18) | C33—C34—O5 | 109.46 (19) |
C13—C14—C15 | 118.97 (18) | C34—C35—C30 | 116.26 (19) |
C16—C15—C14 | 118.74 (17) | C34—C35—H35 | 121.9 |
C16—C15—C17 | 120.40 (19) | C30—C35—H35 | 121.9 |
C14—C15—C17 | 120.86 (18) | O6—C36—O5 | 108.36 (16) |
C15—C16—C11 | 123.19 (18) | O6—C36—H36A | 110.0 |
C15—C16—H16 | 118.4 | O5—C36—H36A | 110.0 |
C11—C16—H16 | 118.4 | O6—C36—H36B | 110.0 |
C15—C17—H17A | 109.5 | O5—C36—H36B | 110.0 |
C15—C17—H17B | 109.5 | H36A—C36—H36B | 108.4 |
H17A—C17—H17B | 109.5 | C26—N1—C27 | 122.31 (16) |
C15—C17—H17C | 109.5 | C26—N1—C10 | 114.23 (15) |
H17A—C17—H17C | 109.5 | C27—N1—C10 | 122.72 (15) |
H17B—C17—H17C | 109.5 | C29—N4—C28 | 116.83 (19) |
N3—C18—C19 | 110.73 (17) | C3—N2—C2 | 122.46 (19) |
N3—C18—H18A | 109.5 | C3—N2—H2N | 116.6 (15) |
C19—C18—H18A | 109.5 | C2—N2—H2N | 119.4 (15) |
N3—C18—H18B | 109.5 | C7—O2—C12 | 118.22 (14) |
C19—C18—H18B | 109.5 | C14—N3—C18 | 123.18 (18) |
H18A—C18—H18B | 108.1 | C14—N3—H3N | 117.7 (15) |
C18—C19—H19A | 109.5 | C18—N3—H3N | 119.1 (15) |
C18—C19—H19B | 109.5 | C34—O5—C36 | 106.19 (15) |
H19A—C19—H19B | 109.5 | C33—O6—C36 | 106.24 (16) |
C18—C19—H19C | 109.5 | ||
C8—C3—C4—C5 | −1.0 (3) | C10—C20—C25—C24 | −178.84 (15) |
N2—C3—C4—C5 | 178.93 (17) | C21—C20—C25—C26 | 176.84 (15) |
C8—C3—C4—C9 | 179.32 (17) | C10—C20—C25—C26 | −2.4 (2) |
N2—C3—C4—C9 | −0.7 (3) | C23—C24—C25—C20 | 0.6 (3) |
C3—C4—C5—C6 | −0.6 (3) | C23—C24—C25—C26 | −174.98 (17) |
C9—C4—C5—C6 | 179.08 (17) | C20—C25—C26—O4 | −178.01 (18) |
C4—C5—C6—C7 | 1.2 (3) | C24—C25—C26—O4 | −2.0 (3) |
C4—C5—C6—C10 | −176.25 (17) | C20—C25—C26—N1 | −0.2 (2) |
C5—C6—C7—O2 | −179.61 (15) | C24—C25—C26—N1 | 175.78 (18) |
C10—C6—C7—O2 | −2.2 (3) | N1—C27—C28—N4 | 175.74 (17) |
C5—C6—C7—C8 | −0.3 (3) | N4—C29—C30—C31 | 166.7 (2) |
C10—C6—C7—C8 | 177.18 (16) | N4—C29—C30—C35 | −11.4 (4) |
N2—C3—C8—C7 | −178.01 (17) | C35—C30—C31—C32 | 1.4 (3) |
C4—C3—C8—C7 | 1.9 (3) | C29—C30—C31—C32 | −176.7 (2) |
C6—C7—C8—C3 | −1.3 (3) | C30—C31—C32—C33 | −0.3 (3) |
O2—C7—C8—C3 | 178.12 (15) | C31—C32—C33—C34 | −0.8 (3) |
C7—C6—C10—N1 | −115.91 (19) | C31—C32—C33—O6 | 178.7 (2) |
C5—C6—C10—N1 | 61.4 (2) | C32—C33—C34—C35 | 0.8 (4) |
C7—C6—C10—C20 | 132.98 (18) | O6—C33—C34—C35 | −178.8 (2) |
C5—C6—C10—C20 | −49.7 (2) | C32—C33—C34—O5 | 179.7 (2) |
C7—C6—C10—C11 | 6.1 (2) | O6—C33—C34—O5 | 0.1 (3) |
C5—C6—C10—C11 | −176.62 (16) | C33—C34—C35—C30 | 0.4 (3) |
N1—C10—C11—C12 | 115.71 (19) | O5—C34—C35—C30 | −178.4 (2) |
C6—C10—C11—C12 | −6.9 (2) | C31—C30—C35—C34 | −1.4 (3) |
C20—C10—C11—C12 | −133.97 (18) | C29—C30—C35—C34 | 176.7 (2) |
N1—C10—C11—C16 | −60.5 (2) | O4—C26—N1—C27 | 10.4 (3) |
C6—C10—C11—C16 | 176.87 (15) | C25—C26—N1—C27 | −167.46 (14) |
C20—C10—C11—C16 | 49.8 (2) | O4—C26—N1—C10 | −179.26 (17) |
C16—C11—C12—O2 | −179.68 (15) | C25—C26—N1—C10 | 2.92 (19) |
C10—C11—C12—O2 | 3.9 (3) | C28—C27—N1—C26 | −110.2 (2) |
C16—C11—C12—C13 | 1.5 (3) | C28—C27—N1—C10 | 80.2 (2) |
C10—C11—C12—C13 | −174.94 (16) | C6—C10—N1—C26 | −123.48 (17) |
C11—C12—C13—C14 | −1.1 (3) | C20—C10—N1—C26 | −4.13 (18) |
O2—C12—C13—C14 | 179.95 (15) | C11—C10—N1—C26 | 114.50 (17) |
C12—C13—C14—N3 | 179.83 (17) | C6—C10—N1—C27 | 46.8 (2) |
C12—C13—C14—C15 | 0.4 (3) | C20—C10—N1—C27 | 166.20 (14) |
N3—C14—C15—C16 | −179.57 (17) | C11—C10—N1—C27 | −75.17 (19) |
C13—C14—C15—C16 | −0.1 (3) | C30—C29—N4—C28 | −179.9 (2) |
N3—C14—C15—C17 | 0.7 (3) | C27—C28—N4—C29 | −133.9 (2) |
C13—C14—C15—C17 | −179.81 (16) | C8—C3—N2—C2 | 6.7 (3) |
C14—C15—C16—C11 | 0.5 (3) | C4—C3—N2—C2 | −173.21 (19) |
C17—C15—C16—C11 | −179.76 (16) | C1—C2—N2—C3 | 172.91 (18) |
C12—C11—C16—C15 | −1.2 (3) | C6—C7—O2—C12 | −1.7 (2) |
C10—C11—C16—C15 | 175.26 (17) | C8—C7—O2—C12 | 178.86 (15) |
N1—C10—C20—C25 | 3.82 (18) | C11—C12—O2—C7 | 0.9 (2) |
C6—C10—C20—C25 | 121.76 (17) | C13—C12—O2—C7 | 179.80 (15) |
C11—C10—C20—C25 | −112.75 (17) | C13—C14—N3—C18 | −3.1 (3) |
N1—C10—C20—C21 | −175.41 (17) | C15—C14—N3—C18 | 176.40 (19) |
C6—C10—C20—C21 | −57.5 (2) | C19—C18—N3—C14 | 179.95 (18) |
C11—C10—C20—C21 | 68.0 (2) | C35—C34—O5—C36 | 178.7 (2) |
C25—C20—C21—C22 | −1.6 (3) | C33—C34—O5—C36 | −0.2 (3) |
C10—C20—C21—C22 | 177.57 (17) | O6—C36—O5—C34 | 0.2 (3) |
C20—C21—C22—C23 | 1.7 (3) | C32—C33—O6—C36 | −179.5 (2) |
C21—C22—C23—C24 | −0.7 (3) | C34—C33—O6—C36 | 0.0 (3) |
C22—C23—C24—C25 | −0.5 (3) | O5—C36—O6—C33 | −0.2 (2) |
C21—C20—C25—C24 | 0.5 (3) |
Experimental details
Crystal data | |
Chemical formula | C36H36N4O4 |
Mr | 588.69 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 9.561 (4), 12.262 (5), 13.005 (6) |
α, β, γ (°) | 93.623 (8), 92.078 (8), 92.827 (7) |
V (Å3) | 1518.5 (12) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.35 × 0.32 × 0.27 |
Data collection | |
Diffractometer | Bruker SMART CCD area detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.971, 0.977 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8102, 5606, 3838 |
Rint | 0.016 |
(sin θ/λ)max (Å−1) | 0.606 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.069, 1.83 |
No. of reflections | 5606 |
No. of parameters | 409 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.18, −0.25 |
Computer programs: SMART (Bruker, 2005), SAINT (Bruker, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
Acknowledgements
The authors thank the Xuchang University for financial support.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Among many fluorescent compounds, rhodamine dyes are known to have excellent photophysical properties, and they are one of the most widely used fluorophores for labeling and sensing biomolecules (Ko et al., 2006; Wu et al., 2007). There are a few single-crystal reports about rhodamine derivatives bearing a lactam moiety (Kwon et al., 2006; Wu et al., 2007; Zhang et al., 2008; Tian et al., 2008; Deng et al., 2009). Detailed information on their molecular and crystal structures is necessary to understand their photophysical and photochemical properties.
In agreement with other reported models, (Wu et al., 2007; Zhang et al., 2008; Tian et al., 2008;) the main skeleton of the molecule is formed by the xanthene ring and the spirolactam-ring. As shown in Figure 1, The atoms of the xanthene ring or the spirolactam-ring are both nearly planar and are almost perpendicular to each other. The dihedral angle between the xanthene mean planes and the spirolactamring fragment is 86.8°. The dihedral angle between the xanthene mean planes and the 1,3-benzodioxole ring is 74.3°.