organic compounds
3,4,5-Trihydroxy-N′-[(1-methyl-1H-indol-2-yl)methylidene]benzohydrazide
aDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia, and bDepartment of Molecular Medicine, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: hapipah@um.edu.my
The structure of the title compound, C17H15N3O4, displays intermolecular O—H⋯N and O—H⋯O hydrogen bonding between adjacent molecules. Intramolecular O—H⋯O hydrogen bonds also occur. The molecule is essentially planar with a deviation of 0.090 (1) Å from the best plane running through the connected ring systems.
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell APEX2; data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2009).
Supporting information
10.1107/S1600536809027032/hg2532sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809027032/hg2532Isup2.hkl
A mixture of 1-Methylindole-2-carboxaldehyde (0.80 g, 5 mmol) and 3,4,5-trihydroxybenzoylhydrazine(0.92 g, 5 mmol) in the presence of acetic acid (1 ml) was heated in ethanol (70 ml) for 6 h. The solution was then cooled and filtered to remove the unreacted hydrazine. The filtrate was poured to water (400 ml), the solid product formed were filtered off, washed with diethyl ether,and dried in an oven. Suitable crystals for X-ray analysis were obtained by slow evaporation of an ethanol solution at room temperature.
All Hydrogen atoms were placed at calculated positions (C—H 0.95–0.98, N—H 0.88 and O—H 0.84 Å), with U(H) set to 1.2–1.5 times Ueq(C,N,O).
Data collection: APEX2 (Bruker, 2007); cell
APEX2 (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2009).Fig. 1. Thermal ellipsoid plot (Barbour, 2001) of the title compound at 70% probability level. Hydrogen atoms are drawn as spheres of arbitrary radius. |
C17H15N3O4 | F(000) = 680 |
Mr = 325.32 | Dx = 1.498 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 3739 reflections |
a = 9.0839 (2) Å | θ = 2.3–30.4° |
b = 13.1684 (3) Å | µ = 0.11 mm−1 |
c = 12.4414 (3) Å | T = 100 K |
β = 104.274 (1)° | Block, green |
V = 1442.30 (6) Å3 | 0.49 × 0.16 × 0.09 mm |
Z = 4 |
Bruker APEXII CCD area-detector diffractometer | 4070 independent reflections |
Radiation source: fine-focus sealed tube | 3153 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.019 |
ω scans | θmax = 30.5°, θmin = 2.3° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −9→12 |
Tmin = 0.948, Tmax = 0.991 | k = −18→18 |
10177 measured reflections | l = −17→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.127 | H-atom parameters constrained |
S = 0.99 | w = 1/[σ2(Fo2) + (0.0672P)2 + 0.9156P] where P = (Fo2 + 2Fc2)/3 |
4070 reflections | (Δ/σ)max < 0.001 |
221 parameters | Δρmax = 0.63 e Å−3 |
0 restraints | Δρmin = −0.26 e Å−3 |
C17H15N3O4 | V = 1442.30 (6) Å3 |
Mr = 325.32 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.0839 (2) Å | µ = 0.11 mm−1 |
b = 13.1684 (3) Å | T = 100 K |
c = 12.4414 (3) Å | 0.49 × 0.16 × 0.09 mm |
β = 104.274 (1)° |
Bruker APEXII CCD area-detector diffractometer | 4070 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 3153 reflections with I > 2σ(I) |
Tmin = 0.948, Tmax = 0.991 | Rint = 0.019 |
10177 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.127 | H-atom parameters constrained |
S = 0.99 | Δρmax = 0.63 e Å−3 |
4070 reflections | Δρmin = −0.26 e Å−3 |
221 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.47487 (13) | 0.36671 (9) | 0.05923 (10) | 0.0132 (2) | |
H1N | 0.4655 | 0.3333 | −0.0034 | 0.016* | |
N2 | 0.38051 (13) | 0.44784 (9) | 0.06479 (10) | 0.0134 (2) | |
N3 | 0.06173 (13) | 0.56577 (9) | −0.13005 (10) | 0.0151 (2) | |
O1 | 0.99391 (12) | 0.12533 (8) | 0.33141 (8) | 0.0165 (2) | |
H1O | 1.0219 | 0.0645 | 0.3313 | 0.025* | |
O2 | 0.98618 (11) | 0.01716 (7) | 0.13104 (8) | 0.0149 (2) | |
H2O | 0.9766 | −0.0305 | 0.1737 | 0.022* | |
O3 | 0.77044 (12) | 0.07206 (8) | −0.05744 (8) | 0.0189 (2) | |
H3O | 0.8473 | 0.0349 | −0.0506 | 0.028* | |
O4 | 0.59664 (13) | 0.38379 (8) | 0.23996 (8) | 0.0199 (2) | |
C1 | 0.04811 (18) | 0.51469 (13) | −0.23489 (13) | 0.0226 (3) | |
H1A | −0.0426 | 0.5393 | −0.2887 | 0.034* | |
H1B | 0.0393 | 0.4413 | −0.2247 | 0.034* | |
H1C | 0.1383 | 0.5288 | −0.2623 | 0.034* | |
C2 | −0.02892 (15) | 0.64421 (11) | −0.11137 (12) | 0.0155 (3) | |
C3 | −0.15129 (16) | 0.69271 (11) | −0.18421 (13) | 0.0192 (3) | |
H3 | −0.1834 | 0.6736 | −0.2600 | 0.023* | |
C4 | −0.22304 (17) | 0.76936 (12) | −0.14091 (14) | 0.0213 (3) | |
H4 | −0.3059 | 0.8039 | −0.1883 | 0.026* | |
C5 | −0.17667 (17) | 0.79760 (11) | −0.02853 (14) | 0.0219 (3) | |
H5 | −0.2291 | 0.8505 | −0.0016 | 0.026* | |
C6 | −0.05636 (17) | 0.74988 (11) | 0.04323 (13) | 0.0195 (3) | |
H6 | −0.0259 | 0.7692 | 0.1191 | 0.023* | |
C7 | 0.02010 (16) | 0.67213 (11) | 0.00177 (12) | 0.0163 (3) | |
C8 | 0.14341 (16) | 0.60759 (11) | 0.05098 (12) | 0.0162 (3) | |
H8 | 0.1997 | 0.6085 | 0.1263 | 0.019* | |
C9 | 0.16628 (15) | 0.54349 (10) | −0.03077 (11) | 0.0137 (3) | |
C10 | 0.27384 (15) | 0.46201 (10) | −0.02389 (11) | 0.0134 (3) | |
H10 | 0.2662 | 0.4180 | −0.0856 | 0.016* | |
C11 | 0.58127 (15) | 0.33924 (10) | 0.15038 (11) | 0.0129 (3) | |
C12 | 0.68091 (14) | 0.25165 (10) | 0.13972 (11) | 0.0123 (3) | |
C13 | 0.78798 (15) | 0.22437 (10) | 0.23633 (11) | 0.0132 (3) | |
H13 | 0.7917 | 0.2597 | 0.3035 | 0.016* | |
C14 | 0.88907 (15) | 0.14590 (10) | 0.23472 (11) | 0.0128 (3) | |
C15 | 0.88441 (15) | 0.09305 (10) | 0.13689 (11) | 0.0122 (2) | |
C16 | 0.77684 (15) | 0.12083 (10) | 0.04008 (11) | 0.0135 (3) | |
C17 | 0.67475 (15) | 0.19925 (10) | 0.04105 (11) | 0.0143 (3) | |
H17 | 0.6014 | 0.2171 | −0.0249 | 0.017* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0140 (5) | 0.0112 (5) | 0.0140 (5) | 0.0024 (4) | 0.0029 (4) | −0.0013 (4) |
N2 | 0.0120 (5) | 0.0110 (5) | 0.0173 (5) | 0.0015 (4) | 0.0040 (4) | 0.0006 (4) |
N3 | 0.0132 (5) | 0.0141 (5) | 0.0174 (6) | 0.0019 (4) | 0.0028 (4) | 0.0011 (4) |
O1 | 0.0180 (5) | 0.0172 (5) | 0.0121 (4) | 0.0047 (4) | −0.0006 (4) | 0.0011 (4) |
O2 | 0.0183 (5) | 0.0122 (5) | 0.0157 (5) | 0.0049 (4) | 0.0069 (4) | 0.0039 (4) |
O3 | 0.0196 (5) | 0.0214 (5) | 0.0139 (5) | 0.0075 (4) | 0.0010 (4) | −0.0046 (4) |
O4 | 0.0232 (5) | 0.0203 (5) | 0.0151 (5) | 0.0068 (4) | 0.0027 (4) | −0.0035 (4) |
C1 | 0.0219 (7) | 0.0248 (8) | 0.0192 (7) | 0.0035 (6) | 0.0014 (6) | −0.0027 (6) |
C2 | 0.0135 (6) | 0.0124 (6) | 0.0219 (7) | 0.0001 (5) | 0.0066 (5) | 0.0025 (5) |
C3 | 0.0148 (6) | 0.0182 (7) | 0.0247 (7) | 0.0009 (5) | 0.0050 (5) | 0.0049 (6) |
C4 | 0.0151 (6) | 0.0168 (7) | 0.0325 (8) | 0.0031 (5) | 0.0070 (6) | 0.0071 (6) |
C5 | 0.0185 (7) | 0.0134 (6) | 0.0370 (9) | 0.0020 (5) | 0.0128 (6) | 0.0013 (6) |
C6 | 0.0193 (7) | 0.0154 (7) | 0.0263 (8) | −0.0008 (5) | 0.0101 (6) | −0.0018 (5) |
C7 | 0.0149 (6) | 0.0129 (6) | 0.0220 (7) | −0.0004 (5) | 0.0068 (5) | 0.0009 (5) |
C8 | 0.0155 (6) | 0.0142 (6) | 0.0197 (7) | 0.0003 (5) | 0.0061 (5) | 0.0004 (5) |
C9 | 0.0122 (6) | 0.0123 (6) | 0.0165 (6) | −0.0002 (5) | 0.0034 (5) | 0.0022 (5) |
C10 | 0.0125 (6) | 0.0126 (6) | 0.0155 (6) | −0.0008 (5) | 0.0042 (5) | −0.0007 (5) |
C11 | 0.0134 (6) | 0.0121 (6) | 0.0135 (6) | 0.0001 (5) | 0.0042 (5) | 0.0011 (5) |
C12 | 0.0122 (6) | 0.0116 (6) | 0.0131 (6) | 0.0007 (4) | 0.0031 (5) | 0.0013 (5) |
C13 | 0.0148 (6) | 0.0131 (6) | 0.0120 (6) | 0.0008 (5) | 0.0034 (5) | −0.0004 (5) |
C14 | 0.0131 (6) | 0.0132 (6) | 0.0117 (6) | 0.0001 (5) | 0.0022 (4) | 0.0029 (5) |
C15 | 0.0120 (6) | 0.0111 (6) | 0.0142 (6) | 0.0012 (4) | 0.0042 (5) | 0.0020 (5) |
C16 | 0.0147 (6) | 0.0142 (6) | 0.0120 (6) | 0.0006 (5) | 0.0038 (5) | −0.0016 (5) |
C17 | 0.0142 (6) | 0.0147 (6) | 0.0129 (6) | 0.0025 (5) | 0.0013 (5) | 0.0007 (5) |
N1—C11 | 1.3455 (17) | C4—C5 | 1.407 (2) |
N1—N2 | 1.3821 (15) | C4—H4 | 0.9500 |
N1—H1N | 0.8800 | C5—C6 | 1.380 (2) |
N2—C10 | 1.2900 (17) | C5—H5 | 0.9500 |
N3—C2 | 1.3760 (18) | C6—C7 | 1.405 (2) |
N3—C9 | 1.3912 (17) | C6—H6 | 0.9500 |
N3—C1 | 1.4455 (19) | C7—C8 | 1.419 (2) |
O1—C14 | 1.3647 (16) | C8—C9 | 1.376 (2) |
O1—H1O | 0.8400 | C8—H8 | 0.9500 |
O2—C15 | 1.3755 (16) | C9—C10 | 1.4394 (19) |
O2—H2O | 0.8400 | C10—H10 | 0.9500 |
O3—C16 | 1.3613 (16) | C11—C12 | 1.4921 (18) |
O3—H3O | 0.8400 | C12—C13 | 1.3941 (18) |
O4—C11 | 1.2365 (17) | C12—C17 | 1.3972 (18) |
C1—H1A | 0.9800 | C13—C14 | 1.3859 (18) |
C1—H1B | 0.9800 | C13—H13 | 0.9500 |
C1—H1C | 0.9800 | C14—C15 | 1.3936 (18) |
C2—C3 | 1.403 (2) | C15—C16 | 1.3995 (18) |
C2—C7 | 1.416 (2) | C16—C17 | 1.3900 (19) |
C3—C4 | 1.381 (2) | C17—H17 | 0.9500 |
C3—H3 | 0.9500 | ||
C11—N1—N2 | 119.41 (11) | C6—C7—C8 | 133.41 (14) |
C11—N1—H1N | 120.3 | C2—C7—C8 | 107.14 (12) |
N2—N1—H1N | 120.3 | C9—C8—C7 | 107.18 (13) |
C10—N2—N1 | 114.41 (11) | C9—C8—H8 | 126.4 |
C2—N3—C9 | 108.32 (12) | C7—C8—H8 | 126.4 |
C2—N3—C1 | 125.46 (12) | C8—C9—N3 | 109.41 (12) |
C9—N3—C1 | 126.22 (12) | C8—C9—C10 | 129.58 (13) |
C14—O1—H1O | 109.5 | N3—C9—C10 | 120.98 (12) |
C15—O2—H2O | 109.5 | N2—C10—C9 | 120.95 (13) |
C16—O3—H3O | 109.5 | N2—C10—H10 | 119.5 |
N3—C1—H1A | 109.5 | C9—C10—H10 | 119.5 |
N3—C1—H1B | 109.5 | O4—C11—N1 | 122.01 (12) |
H1A—C1—H1B | 109.5 | O4—C11—C12 | 120.71 (12) |
N3—C1—H1C | 109.5 | N1—C11—C12 | 117.28 (12) |
H1A—C1—H1C | 109.5 | C13—C12—C17 | 119.91 (12) |
H1B—C1—H1C | 109.5 | C13—C12—C11 | 115.60 (12) |
N3—C2—C3 | 130.13 (14) | C17—C12—C11 | 124.48 (12) |
N3—C2—C7 | 107.95 (12) | C14—C13—C12 | 120.23 (12) |
C3—C2—C7 | 121.92 (13) | C14—C13—H13 | 119.9 |
C4—C3—C2 | 117.12 (14) | C12—C13—H13 | 119.9 |
C4—C3—H3 | 121.4 | O1—C14—C13 | 117.13 (12) |
C2—C3—H3 | 121.4 | O1—C14—C15 | 122.35 (12) |
C3—C4—C5 | 121.76 (14) | C13—C14—C15 | 120.49 (12) |
C3—C4—H4 | 119.1 | O2—C15—C14 | 122.20 (12) |
C5—C4—H4 | 119.1 | O2—C15—C16 | 118.70 (12) |
C6—C5—C4 | 121.17 (14) | C14—C15—C16 | 119.04 (12) |
C6—C5—H5 | 119.4 | O3—C16—C17 | 118.44 (12) |
C4—C5—H5 | 119.4 | O3—C16—C15 | 120.73 (12) |
C5—C6—C7 | 118.60 (15) | C17—C16—C15 | 120.83 (12) |
C5—C6—H6 | 120.7 | C16—C17—C12 | 119.49 (12) |
C7—C6—H6 | 120.7 | C16—C17—H17 | 120.3 |
C6—C7—C2 | 119.43 (13) | C12—C17—H17 | 120.3 |
C11—N1—N2—C10 | −173.94 (12) | C8—C9—C10—N2 | −9.1 (2) |
C9—N3—C2—C3 | −179.04 (14) | N3—C9—C10—N2 | 172.91 (13) |
C1—N3—C2—C3 | 0.1 (2) | N2—N1—C11—O4 | 0.8 (2) |
C9—N3—C2—C7 | 0.29 (15) | N2—N1—C11—C12 | −179.57 (11) |
C1—N3—C2—C7 | 179.39 (13) | O4—C11—C12—C13 | 0.73 (19) |
N3—C2—C3—C4 | 179.14 (14) | N1—C11—C12—C13 | −178.95 (12) |
C7—C2—C3—C4 | −0.1 (2) | O4—C11—C12—C17 | −177.78 (13) |
C2—C3—C4—C5 | −0.4 (2) | N1—C11—C12—C17 | 2.5 (2) |
C3—C4—C5—C6 | 0.3 (2) | C17—C12—C13—C14 | 0.5 (2) |
C4—C5—C6—C7 | 0.2 (2) | C11—C12—C13—C14 | −178.13 (12) |
C5—C6—C7—C2 | −0.7 (2) | C12—C13—C14—O1 | 177.99 (12) |
C5—C6—C7—C8 | −178.83 (15) | C12—C13—C14—C15 | −0.4 (2) |
N3—C2—C7—C6 | −178.74 (13) | O1—C14—C15—O2 | −0.6 (2) |
C3—C2—C7—C6 | 0.7 (2) | C13—C14—C15—O2 | 177.66 (12) |
N3—C2—C7—C8 | −0.15 (16) | O1—C14—C15—C16 | −177.82 (12) |
C3—C2—C7—C8 | 179.24 (13) | C13—C14—C15—C16 | 0.4 (2) |
C6—C7—C8—C9 | 178.27 (16) | O2—C15—C16—O3 | 1.6 (2) |
C2—C7—C8—C9 | −0.04 (16) | C14—C15—C16—O3 | 178.93 (12) |
C7—C8—C9—N3 | 0.22 (16) | O2—C15—C16—C17 | −177.94 (12) |
C7—C8—C9—C10 | −177.98 (14) | C14—C15—C16—C17 | −0.6 (2) |
C2—N3—C9—C8 | −0.32 (16) | O3—C16—C17—C12 | −178.85 (12) |
C1—N3—C9—C8 | −179.42 (13) | C15—C16—C17—C12 | 0.7 (2) |
C2—N3—C9—C10 | 178.06 (12) | C13—C12—C17—C16 | −0.6 (2) |
C1—N3—C9—C10 | −1.0 (2) | C11—C12—C17—C16 | 177.82 (13) |
N1—N2—C10—C9 | 179.93 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2O···O4i | 0.84 | 1.80 | 2.6119 (14) | 164 |
O1—H1O···N2i | 0.84 | 2.06 | 2.7759 (15) | 142 |
O3—H3O···O2ii | 0.84 | 2.12 | 2.8469 (14) | 144 |
O1—H1O···O2 | 0.84 | 2.51 | 2.8570 (14) | 106 |
O3—H3O···O2 | 0.84 | 2.31 | 2.7560 (14) | 113 |
Symmetry codes: (i) −x+3/2, y−1/2, −z+1/2; (ii) −x+2, −y, −z. |
Experimental details
Crystal data | |
Chemical formula | C17H15N3O4 |
Mr | 325.32 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 100 |
a, b, c (Å) | 9.0839 (2), 13.1684 (3), 12.4414 (3) |
β (°) | 104.274 (1) |
V (Å3) | 1442.30 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.49 × 0.16 × 0.09 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.948, 0.991 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10177, 4070, 3153 |
Rint | 0.019 |
(sin θ/λ)max (Å−1) | 0.715 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.127, 0.99 |
No. of reflections | 4070 |
No. of parameters | 221 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.63, −0.26 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), X-SEED (Barbour, 2001), publCIF (Westrip, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2O···O4i | 0.84 | 1.80 | 2.6119 (14) | 163.5 |
O1—H1O···N2i | 0.84 | 2.06 | 2.7759 (15) | 142.4 |
O3—H3O···O2ii | 0.84 | 2.12 | 2.8469 (14) | 144.3 |
O1—H1O···O2 | 0.84 | 2.51 | 2.8570 (14) | 105.9 |
O3—H3O···O2 | 0.84 | 2.31 | 2.7560 (14) | 113.4 |
Symmetry codes: (i) −x+3/2, y−1/2, −z+1/2; (ii) −x+2, −y, −z. |
Acknowledgements
The authors thank the University of Malaya for funding this study (FRGS grant No. FP009/2008 C).
References
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