metal-organic compounds
Diaquabis(5-carboxy-1H-pyrazole-3-carboxylato-κ2N2,O3)cobalt(II) dihydrate
aSchool of Science, Xi'an University of Architecture & Technology, Xi'an 710055, People's Republic of China, and bTianjin Medical University, Tianjin 300070, People's Republic of China
*Correspondence e-mail: xhd02@mails.thu.edu.cn
In the title complex, [Co(C5H3N2O4)2(H2O)2]·2H2O, the CoII ion lies on an inversion center and is coordinated in a distorted octahedral environment. In the complex and water molecules are linked into a three-dimensional network by O—H⋯O and N—H⋯O hydrogen bonds.
Related literature
For a mononuclear zinc(II) complex with a pyrazole-3,5-dicarboxylato ligand, see: Xie et al. (2006) and for a cobalt(III) complex with a 5-carboxy-1H-pyrazole-3-carboxylato ligand, see: Xie et al. (2007). The 3,5-pyrazoledicarboxylic acid ligand is asymmetric and has six potential coordination sites which can act to link together metal centers through a number of bridging modes, see: King et al. (2004). A variety of complexes containing this ligand have been reported, see: Frisch & Cahill (2005); King et al. (2003, 2004); Li et al. (2005); Pan, Ching et al. (2001); Pan, Frydel et al. (2001).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536809029456/lh2869sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809029456/lh2869Isup2.hkl
A mixture of cobalt(II) nitrate (hexhydrate) (0.2 mmol, 58 mg), 3,5-pyrazoledicarboxylic acid (0.4 mmol, 62 mg) and H2O (18.0 ml) in a 1:2:5000 molar ratio was sealed in a 25 ml stainless steel reactor with a Teflon liner. The autoclave was kept at 423 K for 3 d, then cooled to room temperature at a rate of 4 K/h. Orange block-shaped crystals of the title complex were collected by filtration for the structural analysis.
All H atoms bonded to C and N atoms were initially located in difference Fourier maps but were subsequently refined in a riding-model approximation with C—H = 0.93 Å, N—H = 0.86 Å, Uiso(H) = 1.2Ueq(C,N). The O atoms bonded to the carboxylic group and the coordinated water atom were included in calculated positions and refined in a riding-model approximation with O-H = 0.82-0.83Å and Uiso(H) = 1.2-1.5Ueq(O). One of the solvent water H atoms was included with O-H = 0.84; Uiso(H) = 1.2Ueq(O) and the other H atom was refined isotropically.
Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of (I), with atom labels and 35% probability displacement ellipsoids for non-H atoms [symmetry code: (A) -x+1, -y+2, -z]. Only the unique solvent water molecule is shown. | |
Fig. 2. Part of the crystal structure of (I) showing the donor acceptor distances of hydrogen bonds as dashed lines. H atoms have been omitted for clarity. |
[Co(C5H3N2O4)2(H2O)2]·2H2O | F(000) = 450 |
Mr = 441.18 | Dx = 1.809 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 2747 reflections |
a = 10.030 (3) Å | θ = 2.7–27.9° |
b = 12.483 (4) Å | µ = 1.14 mm−1 |
c = 6.827 (2) Å | T = 291 K |
β = 108.641 (4)° | Block, orange |
V = 809.9 (5) Å3 | 0.32 × 0.27 × 0.14 mm |
Z = 2 |
Bruker SMART CCD diffractometer | 1502 independent reflections |
Radiation source: fine-focus sealed tube | 1331 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.036 |
ϕ and ω scans | θmax = 25.5°, θmin = 2.7° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −12→12 |
Tmin = 0.713, Tmax = 0.854 | k = −15→15 |
5748 measured reflections | l = −8→8 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.142 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | w = 1/[σ2(Fo2) + (0.0775P)2 + 1.4115P] where P = (Fo2 + 2Fc2)/3 |
1502 reflections | (Δ/σ)max < 0.001 |
129 parameters | Δρmax = 0.84 e Å−3 |
0 restraints | Δρmin = −0.44 e Å−3 |
[Co(C5H3N2O4)2(H2O)2]·2H2O | V = 809.9 (5) Å3 |
Mr = 441.18 | Z = 2 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.030 (3) Å | µ = 1.14 mm−1 |
b = 12.483 (4) Å | T = 291 K |
c = 6.827 (2) Å | 0.32 × 0.27 × 0.14 mm |
β = 108.641 (4)° |
Bruker SMART CCD diffractometer | 1502 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1331 reflections with I > 2σ(I) |
Tmin = 0.713, Tmax = 0.854 | Rint = 0.036 |
5748 measured reflections |
R[F2 > 2σ(F2)] = 0.048 | 0 restraints |
wR(F2) = 0.142 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | Δρmax = 0.84 e Å−3 |
1502 reflections | Δρmin = −0.44 e Å−3 |
129 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Co1 | 0.5000 | 1.0000 | 0.0000 | 0.0227 (3) | |
O1 | 0.5183 (3) | 0.8358 (2) | −0.0667 (5) | 0.0308 (6) | |
O2 | 0.6657 (3) | 0.6977 (2) | −0.0142 (5) | 0.0337 (7) | |
O3 | 1.1998 (3) | 0.9569 (3) | 0.3134 (5) | 0.0408 (8) | |
O4 | 1.0960 (3) | 1.1105 (2) | 0.3529 (5) | 0.0366 (7) | |
H4 | 1.1772 | 1.1324 | 0.3977 | 0.055* | |
O5 | 0.4797 (3) | 0.9554 (3) | 0.2803 (5) | 0.0378 (7) | |
H1W | 0.4031 | 0.9594 | 0.3020 | 0.045* | |
H2W | 0.5296 | 0.9069 | 0.3484 | 0.045* | |
O6 | 0.7621 (4) | 0.2301 (3) | 0.2670 (8) | 0.0684 (13) | |
H3W | 0.7617 | 0.2926 | 0.3116 | 0.082* | |
N1 | 0.7187 (3) | 0.9727 (3) | 0.1137 (5) | 0.0238 (7) | |
N2 | 0.8371 (3) | 1.0290 (2) | 0.1925 (5) | 0.0237 (7) | |
H2 | 0.8402 | 1.0958 | 0.2251 | 0.028* | |
C1 | 0.6402 (4) | 0.7957 (3) | −0.0049 (6) | 0.0239 (8) | |
C2 | 0.7586 (4) | 0.8723 (3) | 0.0850 (6) | 0.0232 (7) | |
C3 | 0.9054 (4) | 0.8646 (3) | 0.1462 (6) | 0.0255 (8) | |
H3 | 0.9595 | 0.8047 | 0.1422 | 0.031* | |
C4 | 0.9519 (4) | 0.9668 (3) | 0.2143 (6) | 0.0246 (8) | |
C5 | 1.0964 (4) | 1.0103 (3) | 0.2981 (6) | 0.0264 (8) | |
H4W | 0.678 (12) | 0.232 (9) | 0.182 (18) | 0.19 (4)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Co1 | 0.0135 (4) | 0.0169 (4) | 0.0356 (4) | 0.0024 (2) | 0.0049 (3) | 0.0001 (3) |
O1 | 0.0156 (13) | 0.0203 (13) | 0.0522 (17) | 0.0011 (10) | 0.0046 (11) | −0.0035 (12) |
O2 | 0.0203 (14) | 0.0210 (14) | 0.0535 (18) | 0.0006 (10) | 0.0031 (12) | −0.0062 (12) |
O3 | 0.0198 (15) | 0.0342 (16) | 0.066 (2) | 0.0006 (12) | 0.0106 (14) | −0.0041 (15) |
O4 | 0.0207 (14) | 0.0269 (15) | 0.0568 (19) | −0.0042 (11) | 0.0048 (13) | −0.0063 (13) |
O5 | 0.0292 (16) | 0.0418 (17) | 0.0443 (16) | 0.0129 (13) | 0.0143 (13) | 0.0130 (14) |
O6 | 0.041 (2) | 0.0318 (19) | 0.124 (4) | 0.0026 (15) | 0.014 (2) | −0.010 (2) |
N1 | 0.0136 (15) | 0.0210 (15) | 0.0344 (17) | 0.0010 (12) | 0.0041 (12) | −0.0024 (12) |
N2 | 0.0159 (15) | 0.0154 (14) | 0.0379 (17) | −0.0022 (12) | 0.0059 (13) | −0.0025 (13) |
C1 | 0.0170 (17) | 0.0197 (18) | 0.0327 (19) | −0.0005 (14) | 0.0047 (15) | −0.0014 (14) |
C2 | 0.0167 (17) | 0.0185 (17) | 0.0329 (19) | −0.0012 (14) | 0.0056 (15) | −0.0014 (14) |
C3 | 0.0171 (17) | 0.0183 (18) | 0.039 (2) | 0.0018 (13) | 0.0066 (15) | −0.0005 (15) |
C4 | 0.0154 (17) | 0.0236 (18) | 0.0336 (19) | 0.0010 (14) | 0.0064 (14) | 0.0008 (15) |
C5 | 0.0205 (19) | 0.0238 (19) | 0.033 (2) | −0.0021 (14) | 0.0065 (16) | 0.0010 (15) |
Co1—O5i | 2.065 (3) | O5—H2W | 0.8277 |
Co1—O5 | 2.065 (3) | O6—H3W | 0.8380 |
Co1—N1 | 2.108 (3) | O6—H4W | 0.85 (11) |
Co1—N1i | 2.108 (3) | N1—N2 | 1.336 (4) |
Co1—O1i | 2.120 (3) | N1—C2 | 1.349 (5) |
Co1—O1 | 2.120 (3) | N2—C4 | 1.358 (5) |
O1—C1 | 1.262 (5) | N2—H2 | 0.8600 |
O2—C1 | 1.256 (5) | C1—C2 | 1.495 (5) |
O3—C5 | 1.209 (5) | C2—C3 | 1.400 (5) |
O4—C5 | 1.306 (5) | C3—C4 | 1.386 (5) |
O4—H4 | 0.8200 | C3—H3 | 0.9300 |
O5—H1W | 0.8288 | C4—C5 | 1.481 (5) |
O5i—Co1—O5 | 180 | N2—N1—C2 | 106.3 (3) |
O5i—Co1—N1 | 89.16 (12) | N2—N1—Co1 | 138.6 (3) |
O5—Co1—N1 | 90.84 (12) | C2—N1—Co1 | 114.8 (2) |
O5i—Co1—N1i | 90.84 (12) | N1—N2—C4 | 110.9 (3) |
O5—Co1—N1i | 89.16 (12) | N1—N2—H2 | 124.6 |
N1—Co1—N1i | 180 | C4—N2—H2 | 124.6 |
O5i—Co1—O1i | 88.82 (12) | O2—C1—O1 | 124.1 (3) |
O5—Co1—O1i | 91.18 (12) | O2—C1—C2 | 119.7 (3) |
N1—Co1—O1i | 103.22 (11) | O1—C1—C2 | 116.2 (3) |
N1i—Co1—O1i | 76.78 (11) | N1—C2—C3 | 110.7 (3) |
O5i—Co1—O1 | 91.18 (12) | N1—C2—C1 | 114.8 (3) |
O5—Co1—O1 | 88.82 (12) | C3—C2—C1 | 134.5 (3) |
N1—Co1—O1 | 76.78 (11) | C4—C3—C2 | 104.3 (3) |
N1i—Co1—O1 | 103.22 (11) | C4—C3—H3 | 127.9 |
O1i—Co1—O1 | 180 | C2—C3—H3 | 127.9 |
C1—O1—Co1 | 116.9 (2) | N2—C4—C3 | 107.9 (3) |
C5—O4—H4 | 109.5 | N2—C4—C5 | 121.6 (3) |
Co1—O5—H1W | 121.4 | C3—C4—C5 | 130.6 (3) |
Co1—O5—H2W | 119.8 | O3—C5—O4 | 125.8 (4) |
H1W—O5—H2W | 111.9 | O3—C5—C4 | 122.5 (3) |
H3W—O6—H4W | 95.7 | O4—C5—C4 | 111.7 (3) |
O5i—Co1—O1—C1 | 92.3 (3) | Co1—N1—C2—C3 | 174.1 (3) |
O5—Co1—O1—C1 | −87.7 (3) | N2—N1—C2—C1 | −179.5 (3) |
N1—Co1—O1—C1 | 3.4 (3) | Co1—N1—C2—C1 | −5.3 (4) |
N1i—Co1—O1—C1 | −176.6 (3) | O2—C1—C2—N1 | −171.3 (4) |
O5i—Co1—N1—N2 | 81.6 (4) | O1—C1—C2—N1 | 8.3 (5) |
O5—Co1—N1—N2 | −98.4 (4) | O2—C1—C2—C3 | 9.5 (7) |
O1i—Co1—N1—N2 | −6.9 (4) | O1—C1—C2—C3 | −170.8 (4) |
O1—Co1—N1—N2 | 173.1 (4) | N1—C2—C3—C4 | 0.1 (4) |
O5i—Co1—N1—C2 | −90.0 (3) | C1—C2—C3—C4 | 179.3 (4) |
O5—Co1—N1—C2 | 90.0 (3) | N1—N2—C4—C3 | −0.1 (4) |
O1i—Co1—N1—C2 | −178.6 (3) | N1—N2—C4—C5 | 179.8 (3) |
O1—Co1—N1—C2 | 1.4 (3) | C2—C3—C4—N2 | 0.0 (4) |
C2—N1—N2—C4 | 0.2 (4) | C2—C3—C4—C5 | −179.9 (4) |
Co1—N1—N2—C4 | −171.9 (3) | N2—C4—C5—O3 | −178.0 (4) |
Co1—O1—C1—O2 | 172.5 (3) | C3—C4—C5—O3 | 1.9 (7) |
Co1—O1—C1—C2 | −7.2 (4) | N2—C4—C5—O4 | 2.7 (5) |
N2—N1—C2—C3 | −0.2 (4) | C3—C4—C5—O4 | −177.4 (4) |
Symmetry code: (i) −x+1, −y+2, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4···O2ii | 0.82 | 1.73 | 2.535 (4) | 169 |
O5—H1W···O3iii | 0.83 | 2.07 | 2.887 (4) | 171 |
O5—H2W···O2iv | 0.83 | 1.91 | 2.726 (4) | 171 |
O6—H4W···O1v | 0.85 (11) | 2.06 (11) | 2.828 (5) | 149 (10) |
O6—H3W···O3vi | 0.84 | 2.30 | 2.932 (5) | 132 |
N2—H2···O6vii | 0.86 | 1.91 | 2.714 (5) | 155 |
Symmetry codes: (ii) −x+2, y+1/2, −z+1/2; (iii) x−1, y, z; (iv) x, −y+3/2, z+1/2; (v) −x+1, −y+1, −z; (vi) −x+2, y−1/2, −z+1/2; (vii) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | [Co(C5H3N2O4)2(H2O)2]·2H2O |
Mr | 441.18 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 291 |
a, b, c (Å) | 10.030 (3), 12.483 (4), 6.827 (2) |
β (°) | 108.641 (4) |
V (Å3) | 809.9 (5) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.14 |
Crystal size (mm) | 0.32 × 0.27 × 0.14 |
Data collection | |
Diffractometer | Bruker SMART CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.713, 0.854 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5748, 1502, 1331 |
Rint | 0.036 |
(sin θ/λ)max (Å−1) | 0.606 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.142, 1.12 |
No. of reflections | 1502 |
No. of parameters | 129 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.84, −0.44 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
Co1—O5 | 2.065 (3) | O1—C1 | 1.262 (5) |
Co1—N1 | 2.108 (3) | O2—C1 | 1.256 (5) |
Co1—O1 | 2.120 (3) | ||
O5i—Co1—O5 | 180 | N1—Co1—O1i | 103.22 (11) |
O5—Co1—N1 | 90.84 (12) | O5—Co1—O1 | 88.82 (12) |
O5—Co1—N1i | 89.16 (12) | N1—Co1—O1 | 76.78 (11) |
N1—Co1—N1i | 180 | O1i—Co1—O1 | 180 |
O5—Co1—O1i | 91.18 (12) |
Symmetry code: (i) −x+1, −y+2, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4···O2ii | 0.82 | 1.73 | 2.535 (4) | 168.9 |
O5—H1W···O3iii | 0.83 | 2.07 | 2.887 (4) | 171.1 |
O5—H2W···O2iv | 0.83 | 1.91 | 2.726 (4) | 171.0 |
O6—H4W···O1v | 0.85 (11) | 2.06 (11) | 2.828 (5) | 149 (10) |
O6—H3W···O3vi | 0.84 | 2.30 | 2.932 (5) | 132.4 |
N2—H2···O6vii | 0.86 | 1.91 | 2.714 (5) | 155.0 |
Symmetry codes: (ii) −x+2, y+1/2, −z+1/2; (iii) x−1, y, z; (iv) x, −y+3/2, z+1/2; (v) −x+1, −y+1, −z; (vi) −x+2, y−1/2, −z+1/2; (vii) x, y+1, z. |
Acknowledgements
The authors thank the University Youth Fund (grant No. RC0735) for financial support.
References
Bruker (2001). SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Frisch, M. & Cahill, C. L. (2005). Dalton Trans. pp. 1518–1523. Web of Science CSD CrossRef Google Scholar
King, P., Clerac, R., Anson, C. E., Coulon, C. & Powell, A. K. (2003). Inorg. Chem. 42, 3492–3500. Web of Science CSD CrossRef PubMed CAS Google Scholar
King, P., Clerac, R., Anson, C. E. & Powell, A. K. (2004). Dalton Trans. pp. 852–861. Web of Science CSD CrossRef Google Scholar
Li, X.-H., Lei, X.-X., Tian, Y.-G. & Wang, S. (2005). Acta Cryst. E61, m702–m704. Web of Science CSD CrossRef IUCr Journals Google Scholar
Pan, L., Ching, N., Huang, X.-Y. & Li, J. (2001). Chem. Eur. J. 7, 4431–4437. CrossRef PubMed CAS Google Scholar
Pan, L., Frydel, T., Sander, M. B., Huang, X.-Y. & Li, J. (2001). Inorg. Chem. 40, 1271–1283. Web of Science CSD CrossRef PubMed CAS Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Xie, H.-D., Xie, C.-Z., Wang, X.-Q., Shen, G.-Q. & Shen, D.-Z. (2006). Acta Cryst. E62, m3119–m3121. Web of Science CSD CrossRef IUCr Journals Google Scholar
Xie, H.-D., Xie, C.-Z., Wang, X.-Q., Shen, G.-Q. & Shen, D.-Z. (2007). Acta Cryst. E63, m1477–m1479. Web of Science CSD CrossRef IUCr Journals Google Scholar
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In the past few decades, self-assembly processes involving metal ions and organic ligands directed by either metal coordination or hydrogen bonds have received a great deal of attention in the field of supramolecular chemistry and crystal engineering. The 3,5-pyrazoledicarboxylic acid ligand is asymmetric and has six potential coordination sites which can act to link together metal centers through a number of bridging modes (King et al., 2004). A variety of complexes containing this ligand have been reported (Frisch et al., 2005; King et al., 2003, 2004; Pan, Ching et al., 2001; Pan, Frydel et al., 2001; Li et al., 2005).
The molecular structure of the title complex , (I), is shown in Fig. 1. The CoII ion is located on an inversion center and is coordinated in a distorted octahedral environment. The axial sites are occupied by water molecules and the equatorial plane is fromed by two oxygen donors and two nitrogen donors from two chelating 5-carboxy-pyrazole-3-carboxylato ligands. In the crystal structure complex and water molecules are linked into a three-dimensional network by O-H···O and N-H···O hydrogen bonds.