organic compounds
5-Azido-4-benzyloxy-2-methoxy-6-methylperhydropyran-3-ol
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bSyngene International Ltd, Biocon Park, Plot Nos. 2 & 3, Bommasandra 4th Phase, Jigani Link Rd, Bangalore 560 100, India, cDepartment of Printing, Manipal Institute of Technology, Manipal 576 104, India, and dDepartment of Chemistry, National Institute of Technology-Karnataka, Surathkal, Mangalore 575 025, India
*Correspondence e-mail: hkfun@usm.my
In the title compound, C14H19N3O4, the perhydropyran ring adopts a chair conformation. An intramolecular C—H⋯O hydrogen bond generates an S(6) ring motif. In the crystal packing, molecules are linked by O—H⋯O hydrogen bonds, forming infinite chains along [100].
Related literature
For background to D-perosamine, see: Jacquinet (2006). For the synthesis of D-perosamine, see: Krishna & Agrawal (2000). For metabolites, see: Grond et al. (2000). For ring conformations, see: Cremer & Pople (1975). For hydrogen-bond motifs, see: Bernstein et al. (1995). For bond-length data, see: Allen et al. (1987). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536809028657/ng2616sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809028657/ng2616Isup2.hkl
To a stirred mixture of methyl 3-benzyloxy-4-methoxysulfonyl-α-D-rhamnopyranoside (0.50 g, 1.4 mmol) in DMF (5.0 ml) was added sodium azide (0.18 g, 2.8 mmol). The reaction mixture was stirred further at room temperature for 12 h. TLC (30% EtOAc/hexane, Rf-0.5) analysis showed complete conversion. The reaction mixture was concentrated under vacuum and the residue was purified by using 25% ethylacetate in petroleum ether to get pure product as colourless crystals (yield: 300.0 mg, 71%, M.p. 376–378 K).
Atom H1O2 was located in a difference map and was refined freely. Other H atoms were positioned geometrically [C—H = 0.93 to 0.98 Å] and was refined using a riding model, with Uiso(H) = 1.2 or 1.5 Ueq(C). A rotating-group model was applied for the methyl groups. In the absence of significant
1187 Friedel pairs were merged for the final refinement.Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C14H19N3O4 | F(000) = 624 |
Mr = 293.32 | Dx = 1.301 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 1880 reflections |
a = 4.6662 (2) Å | θ = 2.4–29.9° |
b = 15.3356 (8) Å | µ = 0.10 mm−1 |
c = 20.9273 (12) Å | T = 100 K |
V = 1497.54 (13) Å3 | Block, colourless |
Z = 4 | 0.27 × 0.11 × 0.08 mm |
Bruker SMART APEXII CCD area-detector diffractometer | 1742 independent reflections |
Radiation source: fine-focus sealed tube | 1334 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.096 |
ϕ and ω scans | θmax = 26.0°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −5→5 |
Tmin = 0.773, Tmax = 0.980 | k = −18→17 |
13029 measured reflections | l = −25→25 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.049 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.103 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0499P)2] where P = (Fo2 + 2Fc2)/3 |
1742 reflections | (Δ/σ)max < 0.001 |
196 parameters | Δρmax = 0.23 e Å−3 |
0 restraints | Δρmin = −0.20 e Å−3 |
C14H19N3O4 | V = 1497.54 (13) Å3 |
Mr = 293.32 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 4.6662 (2) Å | µ = 0.10 mm−1 |
b = 15.3356 (8) Å | T = 100 K |
c = 20.9273 (12) Å | 0.27 × 0.11 × 0.08 mm |
Bruker SMART APEXII CCD area-detector diffractometer | 1742 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 1334 reflections with I > 2σ(I) |
Tmin = 0.773, Tmax = 0.980 | Rint = 0.096 |
13029 measured reflections |
R[F2 > 2σ(F2)] = 0.049 | 0 restraints |
wR(F2) = 0.103 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | Δρmax = 0.23 e Å−3 |
1742 reflections | Δρmin = −0.20 e Å−3 |
196 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.0881 (4) | 0.40074 (13) | 0.13521 (10) | 0.0229 (5) | |
O2 | 0.0911 (5) | 0.28256 (14) | 0.02574 (11) | 0.0251 (5) | |
O3 | 0.3176 (5) | 0.39026 (14) | −0.06657 (9) | 0.0236 (5) | |
O4 | −0.0200 (5) | 0.49881 (14) | −0.04434 (10) | 0.0250 (5) | |
N1 | 0.3572 (6) | 0.56890 (17) | 0.10102 (12) | 0.0260 (7) | |
N2 | 0.3482 (6) | 0.56020 (18) | 0.16023 (14) | 0.0306 (7) | |
N3 | 0.3680 (9) | 0.5600 (2) | 0.21422 (15) | 0.0537 (11) | |
C1 | 0.2228 (8) | 0.2487 (2) | 0.26646 (17) | 0.0341 (9) | |
H1A | 0.3517 | 0.2100 | 0.2479 | 0.041* | |
C2 | 0.1203 (8) | 0.2318 (2) | 0.32682 (17) | 0.0389 (9) | |
H2A | 0.1795 | 0.1820 | 0.3485 | 0.047* | |
C3 | −0.0706 (8) | 0.2888 (3) | 0.35523 (17) | 0.0379 (9) | |
H3A | −0.1405 | 0.2776 | 0.3960 | 0.045* | |
C4 | −0.1561 (9) | 0.3619 (2) | 0.32269 (16) | 0.0362 (9) | |
H4A | −0.2856 | 0.4003 | 0.3413 | 0.043* | |
C5 | −0.0489 (8) | 0.3786 (2) | 0.26165 (16) | 0.0314 (9) | |
H5A | −0.1051 | 0.4289 | 0.2402 | 0.038* | |
C6 | 0.1390 (7) | 0.3216 (2) | 0.23289 (15) | 0.0245 (7) | |
C7 | 0.2586 (8) | 0.3380 (2) | 0.16733 (16) | 0.0309 (9) | |
H7A | 0.4541 | 0.3590 | 0.1708 | 0.037* | |
H7B | 0.2607 | 0.2840 | 0.1431 | 0.037* | |
C8 | 0.1803 (7) | 0.4219 (2) | 0.07207 (14) | 0.0209 (7) | |
H8A | 0.3837 | 0.4073 | 0.0675 | 0.025* | |
C9 | 0.1415 (7) | 0.51995 (19) | 0.06387 (14) | 0.0193 (7) | |
H9A | −0.0498 | 0.5361 | 0.0791 | 0.023* | |
C10 | 0.1727 (7) | 0.5493 (2) | −0.00515 (14) | 0.0215 (7) | |
H10A | 0.3703 | 0.5397 | −0.0193 | 0.026* | |
C11 | 0.0416 (7) | 0.4086 (2) | −0.04432 (15) | 0.0241 (8) | |
H11A | −0.0965 | 0.3794 | −0.0723 | 0.029* | |
C12 | 0.0088 (7) | 0.37161 (19) | 0.02287 (15) | 0.0214 (7) | |
H12A | −0.1941 | 0.3754 | 0.0347 | 0.026* | |
C13 | 0.3436 (8) | 0.4054 (3) | −0.13393 (15) | 0.0361 (9) | |
H13A | 0.5309 | 0.3880 | −0.1480 | 0.054* | |
H13B | 0.3159 | 0.4662 | −0.1427 | 0.054* | |
H13C | 0.2012 | 0.3720 | −0.1562 | 0.054* | |
C14 | 0.0949 (9) | 0.6437 (2) | −0.01442 (16) | 0.0364 (9) | |
H14A | 0.1146 | 0.6588 | −0.0587 | 0.055* | |
H14B | 0.2203 | 0.6795 | 0.0107 | 0.055* | |
H14C | −0.0997 | 0.6530 | −0.0012 | 0.055* | |
H1O2 | −0.060 (8) | 0.251 (2) | 0.0151 (15) | 0.028 (10)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0225 (12) | 0.0219 (12) | 0.0243 (11) | 0.0014 (10) | 0.0055 (10) | 0.0037 (10) |
O2 | 0.0200 (12) | 0.0185 (12) | 0.0368 (13) | −0.0030 (11) | 0.0015 (11) | −0.0055 (10) |
O3 | 0.0222 (11) | 0.0283 (13) | 0.0205 (11) | 0.0038 (11) | −0.0013 (10) | −0.0046 (10) |
O4 | 0.0249 (12) | 0.0218 (12) | 0.0282 (12) | 0.0030 (11) | −0.0041 (10) | −0.0033 (10) |
N1 | 0.0301 (16) | 0.0255 (17) | 0.0224 (16) | −0.0079 (14) | 0.0009 (14) | −0.0004 (12) |
N2 | 0.0360 (17) | 0.0250 (17) | 0.0307 (19) | −0.0096 (14) | −0.0032 (15) | −0.0024 (13) |
N3 | 0.084 (3) | 0.049 (2) | 0.0274 (18) | −0.028 (2) | −0.0075 (19) | −0.0015 (15) |
C1 | 0.036 (2) | 0.032 (2) | 0.035 (2) | 0.0072 (17) | 0.0014 (17) | 0.0053 (17) |
C2 | 0.044 (2) | 0.032 (2) | 0.040 (2) | 0.003 (2) | 0.000 (2) | 0.0127 (18) |
C3 | 0.040 (2) | 0.045 (2) | 0.0295 (19) | −0.002 (2) | 0.0026 (18) | 0.0106 (18) |
C4 | 0.040 (2) | 0.036 (2) | 0.0329 (19) | 0.0034 (19) | 0.0131 (19) | 0.0041 (17) |
C5 | 0.038 (2) | 0.0257 (19) | 0.0300 (19) | 0.0002 (18) | 0.0039 (18) | 0.0061 (16) |
C6 | 0.0246 (18) | 0.0220 (18) | 0.0267 (17) | −0.0019 (16) | −0.0029 (16) | 0.0018 (15) |
C7 | 0.0305 (19) | 0.031 (2) | 0.0315 (19) | 0.0135 (17) | 0.0029 (16) | 0.0033 (16) |
C8 | 0.0170 (16) | 0.0213 (18) | 0.0244 (17) | −0.0001 (15) | 0.0013 (15) | 0.0015 (14) |
C9 | 0.0197 (16) | 0.0150 (16) | 0.0233 (16) | 0.0001 (14) | 0.0031 (15) | −0.0037 (13) |
C10 | 0.0238 (17) | 0.0185 (17) | 0.0224 (16) | −0.0001 (15) | 0.0005 (15) | −0.0037 (14) |
C11 | 0.0224 (16) | 0.0213 (18) | 0.0286 (18) | −0.0019 (15) | −0.0045 (15) | −0.0047 (15) |
C12 | 0.0153 (15) | 0.0157 (16) | 0.0333 (18) | 0.0017 (14) | 0.0013 (15) | −0.0062 (14) |
C13 | 0.035 (2) | 0.052 (2) | 0.0214 (17) | 0.004 (2) | −0.0043 (18) | −0.0014 (17) |
C14 | 0.052 (2) | 0.028 (2) | 0.0291 (19) | 0.0020 (19) | 0.0024 (19) | 0.0017 (16) |
O1—C7 | 1.418 (4) | C5—H5A | 0.9300 |
O1—C8 | 1.427 (4) | C6—C7 | 1.502 (4) |
O2—C12 | 1.420 (3) | C7—H7A | 0.9700 |
O2—H1O2 | 0.88 (4) | C7—H7B | 0.9700 |
O3—C11 | 1.398 (4) | C8—C12 | 1.515 (4) |
O3—C13 | 1.434 (4) | C8—C9 | 1.524 (4) |
O4—C11 | 1.412 (4) | C8—H8A | 0.9800 |
O4—C10 | 1.443 (4) | C9—C10 | 1.520 (4) |
N1—N2 | 1.247 (4) | C9—H9A | 0.9800 |
N1—C9 | 1.477 (4) | C10—C14 | 1.505 (4) |
N2—N3 | 1.134 (4) | C10—H10A | 0.9800 |
C1—C2 | 1.375 (5) | C11—C12 | 1.524 (4) |
C1—C6 | 1.376 (5) | C11—H11A | 0.9800 |
C1—H1A | 0.9300 | C12—H12A | 0.9800 |
C2—C3 | 1.382 (5) | C13—H13A | 0.9600 |
C2—H2A | 0.9300 | C13—H13B | 0.9600 |
C3—C4 | 1.371 (5) | C13—H13C | 0.9600 |
C3—H3A | 0.9300 | C14—H14A | 0.9600 |
C4—C5 | 1.396 (5) | C14—H14B | 0.9600 |
C4—H4A | 0.9300 | C14—H14C | 0.9600 |
C5—C6 | 1.378 (5) | ||
C7—O1—C8 | 115.1 (2) | N1—C9—C10 | 106.5 (2) |
C12—O2—H1O2 | 107 (2) | N1—C9—C8 | 111.2 (3) |
C11—O3—C13 | 111.9 (2) | C10—C9—C8 | 112.8 (2) |
C11—O4—C10 | 113.5 (2) | N1—C9—H9A | 108.7 |
N2—N1—C9 | 116.5 (3) | C10—C9—H9A | 108.7 |
N3—N2—N1 | 171.1 (4) | C8—C9—H9A | 108.7 |
C2—C1—C6 | 121.5 (3) | O4—C10—C14 | 107.0 (3) |
C2—C1—H1A | 119.2 | O4—C10—C9 | 108.8 (2) |
C6—C1—H1A | 119.2 | C14—C10—C9 | 112.6 (3) |
C1—C2—C3 | 120.0 (3) | O4—C10—H10A | 109.5 |
C1—C2—H2A | 120.0 | C14—C10—H10A | 109.5 |
C3—C2—H2A | 120.0 | C9—C10—H10A | 109.5 |
C4—C3—C2 | 119.4 (3) | O3—C11—O4 | 112.6 (3) |
C4—C3—H3A | 120.3 | O3—C11—C12 | 109.0 (3) |
C2—C3—H3A | 120.3 | O4—C11—C12 | 110.2 (3) |
C3—C4—C5 | 120.1 (3) | O3—C11—H11A | 108.3 |
C3—C4—H4A | 120.0 | O4—C11—H11A | 108.3 |
C5—C4—H4A | 120.0 | C12—C11—H11A | 108.3 |
C6—C5—C4 | 120.7 (3) | O2—C12—C8 | 108.5 (2) |
C6—C5—H5A | 119.6 | O2—C12—C11 | 111.7 (2) |
C4—C5—H5A | 119.6 | C8—C12—C11 | 112.6 (3) |
C1—C6—C5 | 118.3 (3) | O2—C12—H12A | 107.9 |
C1—C6—C7 | 119.8 (3) | C8—C12—H12A | 107.9 |
C5—C6—C7 | 121.9 (3) | C11—C12—H12A | 107.9 |
O1—C7—C6 | 109.8 (3) | O3—C13—H13A | 109.5 |
O1—C7—H7A | 109.7 | O3—C13—H13B | 109.5 |
C6—C7—H7A | 109.7 | H13A—C13—H13B | 109.5 |
O1—C7—H7B | 109.7 | O3—C13—H13C | 109.5 |
C6—C7—H7B | 109.7 | H13A—C13—H13C | 109.5 |
H7A—C7—H7B | 108.2 | H13B—C13—H13C | 109.5 |
O1—C8—C12 | 110.8 (2) | C10—C14—H14A | 109.5 |
O1—C8—C9 | 107.0 (2) | C10—C14—H14B | 109.5 |
C12—C8—C9 | 111.3 (3) | H14A—C14—H14B | 109.5 |
O1—C8—H8A | 109.2 | C10—C14—H14C | 109.5 |
C12—C8—H8A | 109.2 | H14A—C14—H14C | 109.5 |
C9—C8—H8A | 109.2 | H14B—C14—H14C | 109.5 |
C9—N1—N2—N3 | −177 (2) | C12—C8—C9—C10 | −47.1 (4) |
C6—C1—C2—C3 | −0.2 (6) | C11—O4—C10—C14 | 175.5 (3) |
C1—C2—C3—C4 | 0.0 (6) | C11—O4—C10—C9 | −62.7 (3) |
C2—C3—C4—C5 | −0.5 (6) | N1—C9—C10—O4 | 176.0 (2) |
C3—C4—C5—C6 | 1.2 (6) | C8—C9—C10—O4 | 53.7 (3) |
C2—C1—C6—C5 | 0.9 (5) | N1—C9—C10—C14 | −65.6 (3) |
C2—C1—C6—C7 | 179.4 (3) | C8—C9—C10—C14 | 172.2 (3) |
C4—C5—C6—C1 | −1.4 (5) | C13—O3—C11—O4 | −70.6 (3) |
C4—C5—C6—C7 | −179.8 (3) | C13—O3—C11—C12 | 166.9 (2) |
C8—O1—C7—C6 | −179.9 (3) | C10—O4—C11—O3 | −59.5 (3) |
C1—C6—C7—O1 | 163.7 (3) | C10—O4—C11—C12 | 62.4 (3) |
C5—C6—C7—O1 | −17.8 (5) | O1—C8—C12—O2 | −71.0 (3) |
C7—O1—C8—C12 | 98.3 (3) | C9—C8—C12—O2 | 170.1 (3) |
C7—O1—C8—C9 | −140.2 (3) | O1—C8—C12—C11 | 164.8 (2) |
N2—N1—C9—C10 | 173.4 (3) | C9—C8—C12—C11 | 45.9 (3) |
N2—N1—C9—C8 | −63.3 (4) | O3—C11—C12—O2 | −51.3 (3) |
O1—C8—C9—N1 | 72.2 (3) | O4—C11—C12—O2 | −175.3 (2) |
C12—C8—C9—N1 | −166.7 (2) | O3—C11—C12—C8 | 71.1 (3) |
O1—C8—C9—C10 | −168.2 (2) | O4—C11—C12—C8 | −52.9 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H1O2···O2i | 0.88 (4) | 1.91 (3) | 2.757 (2) | 161 (3) |
O2—H1O2···O3i | 0.88 (3) | 2.49 (3) | 3.063 (3) | 124 (3) |
C7—H7B···O2 | 0.97 | 2.58 | 3.180 (4) | 120 |
Symmetry code: (i) x−1/2, −y+1/2, −z. |
Experimental details
Crystal data | |
Chemical formula | C14H19N3O4 |
Mr | 293.32 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 100 |
a, b, c (Å) | 4.6662 (2), 15.3356 (8), 20.9273 (12) |
V (Å3) | 1497.54 (13) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.27 × 0.11 × 0.08 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.773, 0.980 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13029, 1742, 1334 |
Rint | 0.096 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.103, 1.09 |
No. of reflections | 1742 |
No. of parameters | 196 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.23, −0.20 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H1O2···O2i | 0.88 (4) | 1.91 (3) | 2.757 (2) | 161 (3) |
O2—H1O2···O3i | 0.88 (3) | 2.49 (3) | 3.063 (3) | 124 (3) |
C7—H7B···O2 | 0.9700 | 2.5800 | 3.180 (4) | 120.00 |
Symmetry code: (i) x−1/2, −y+1/2, −z. |
Footnotes
‡Thomson Reuters ResearcherID: A-3561-2009.
Acknowledgements
HKF and WSL thank Universiti Sains Malaysia (USM) for the Research University Golden Goose Grant (1001/PFIZIK/811012). WSL thanks USM for a student assistantship.
References
Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19. CrossRef Web of Science Google Scholar
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573. CrossRef CAS Web of Science Google Scholar
Bruker (2005). APEX2 SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst. 19, 105–107. CrossRef CAS Web of Science IUCr Journals Google Scholar
Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358. CrossRef CAS Web of Science Google Scholar
Grond, S., Langer, H. J., Henne, P., Sattler, I., Thiericke, R., Grabley, S., Zähner, H. & Zeeck, A. (2000). Eur. J. Chem. pp. 929–937. CrossRef Google Scholar
Jacquinet, J. C. (2006). Carbohydr. Res. 341, 1630–1644. Web of Science CrossRef PubMed CAS Google Scholar
Krishna, N. R. & Agrawal, P. K. (2000). Adv. Carbohydr. Chem. Biochem. 56, 201–234. PubMed CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
4-Amino-4,6-dideoxy-D-mannose (D-perosamine) was first discovered in the polyene macrolide antibiotic perimycin and was later recognized to be present in the lipopolysaccharide (LPS) of Vivrio cholera (Jacquinet, 2006). Methyl 3-benzyloxy-4-azido-α-D-rhamnopyranoside is an important intermediate in the synthesis of D-perosamine (Krishna & Agrawal, 2000). Rhamnopyranosides were detected as metabolites from five different strains of Streptomycetes (Grond et al., 2000).
The bond lengths (Allen et al., 1987) and angles in the molecule (Fig. 1) are within normal ranges. The perhydropyran ring adopts a chair conformation. The puckering parameters (Cremer & Pople, 1975) are Q = 0.540 (3) Å; Θ = 8.0 (3)° and ϕ = 8.0 (2)°. Intramolecular C7—H7B···O2 hydrogen bonds formed a six-membered ring, producing an S(6) ring motif (Bernstein et al., 1995). The dihedral angle formed between the benzene (C1—C6) and perhydropyran (C8—C10/O4/C11/C12) rings is 57.32 (16)°.
In the crystal packing (Fig. 2), the molecules are linked by intermolecular O2—H1O2···O2 and O2—H1O2···O3 hydrogen bonds (Table 1) into an infinite one-dimensional chains along the [100] direction.