organic compounds
4-Hydrazinopyridinium chloride
aDepartment of Chemistry and Biochemistry, The University of Lethbridge, Lethbridge, Alberta, Canada T1K3M4
*Correspondence e-mail: boere@uleth.ca
In the title compound, C5H8N3+·Cl−, the cation and the anion lie on a mirror plane and are hydrogen bonded in a three-dimensional network via the H atoms of the two hydrazine N atoms. The pyridine N atom is protonated and hydrogen bonded to the terminal hydrazine N atom.
Related literature
For related structures, see: Lima et al. (2008); Hammerl et al. (2001). For background to the synthesis, see: Mann et al. (1959).
Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2006); cell SAINT-Plus (Bruker, 2006); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXD (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2006); software used to prepare material for publication: publCIF (Westrip, 2009).
Supporting information
10.1107/S1600536809026348/pv2178sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809026348/pv2178Isup2.hkl
4-Chloropyridine (1.1 mmol, 4.20 g) and pure hydrazine hydrate (1.1 mmol, 1.63 g) were added to 10 ml of 1-propanol. After refluxing for 48 h, the mixture was cooled to 273 K and washed with cold 1-propanol. Recrystallization from methanol yielded 3.6 g of the title compound (I) as colorless needles in 65% yield. The compound (I) has a melting point of 516–517 K, which was in agreement with published values (Mann et al. 1959).
Space group determination was ambiguous between P21 and P21/m because of poor E-statistics. However, the structure was successfully solved using the SHELXD procedure (Sheldrick, 2008) and refined in P21/m. The origin of the ambiguous E-statistics became obvious after structure solution, as every atom except for the two N8 hydrogen atoms are found on a crystallographic mirror plane. All H atoms were located in a difference map. N-bound H atoms were freely refined with the constraint Uiso(H) = 1.2Ueq(N). The C-bound H atoms were placed in calculated positions (C—H = 0.95 Å) and refined as riding with Uiso(H) = 1.2Ueq(C).
Data collection: APEX2 (Bruker, 2006); cell
SAINT-Plus (Bruker, 2006); data reduction: SAINT-Plus (Bruker, 2006); program(s) used to solve structure: SHELXD (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2006); software used to prepare material for publication: publCIF (Westrip, 2009).Fig. 1. A view of (I) plotted with displacement ellipsoids at 50% probability level. | |
Fig. 2. Packing diagram of (I) showing the network of H-bonds. |
C5H8N3+·Cl− | F(000) = 152 |
Mr = 145.59 | Dx = 1.402 Mg m−3 |
Monoclinic, P21/m | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yb | Cell parameters from 4500 reflections |
a = 6.9526 (11) Å | θ = 2.6–27.5° |
b = 6.434 (1) Å | µ = 0.46 mm−1 |
c = 7.7432 (12) Å | T = 173 K |
β = 95.316 (1)° | Block, colourless |
V = 344.89 (9) Å3 | 0.27 × 0.19 × 0.18 mm |
Z = 2 |
Bruker APEXII CCD area-detector diffractometer | 855 independent reflections |
Radiation source: fine-focus sealed tube | 840 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.016 |
ϕ and ω scans | θmax = 27.5°, θmin = 2.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2006) | h = −9→9 |
Tmin = 0.884, Tmax = 0.920 | k = −8→8 |
4968 measured reflections | l = −10→10 |
Refinement on F2 | Secondary atom site location: notdet |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.022 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.060 | w = 1/[σ2(Fo2) + (0.0256P)2 + 0.1361P] where P = (Fo2 + 2Fc2)/3 |
S = 1.13 | (Δ/σ)max < 0.001 |
855 reflections | Δρmax = 0.32 e Å−3 |
63 parameters | Δρmin = −0.20 e Å−3 |
0 restraints | Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: dual | Extinction coefficient: 0.038 (6) |
C5H8N3+·Cl− | V = 344.89 (9) Å3 |
Mr = 145.59 | Z = 2 |
Monoclinic, P21/m | Mo Kα radiation |
a = 6.9526 (11) Å | µ = 0.46 mm−1 |
b = 6.434 (1) Å | T = 173 K |
c = 7.7432 (12) Å | 0.27 × 0.19 × 0.18 mm |
β = 95.316 (1)° |
Bruker APEXII CCD area-detector diffractometer | 855 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2006) | 840 reflections with I > 2σ(I) |
Tmin = 0.884, Tmax = 0.920 | Rint = 0.016 |
4968 measured reflections |
R[F2 > 2σ(F2)] = 0.022 | 0 restraints |
wR(F2) = 0.060 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.13 | Δρmax = 0.32 e Å−3 |
855 reflections | Δρmin = −0.20 e Å−3 |
63 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.83751 (5) | 0.2500 | 0.59397 (4) | 0.02334 (14) | |
N1 | 0.3602 (2) | 0.2500 | −0.14229 (17) | 0.0266 (3) | |
N7 | 0.42703 (18) | 0.2500 | 0.38856 (16) | 0.0210 (3) | |
N8 | 0.27431 (18) | 0.2500 | 0.49629 (16) | 0.0212 (3) | |
C2 | 0.2020 (3) | 0.2500 | −0.0545 (2) | 0.0274 (3) | |
H2 | 0.0779 | 0.2500 | −0.1172 | 0.033* | |
C3 | 0.2159 (2) | 0.2500 | 0.12280 (19) | 0.0238 (3) | |
H3 | 0.1027 | 0.2500 | 0.1827 | 0.029* | |
C4 | 0.4010 (2) | 0.2500 | 0.21599 (18) | 0.0183 (3) | |
C5 | 0.5645 (2) | 0.2500 | 0.11846 (19) | 0.0213 (3) | |
H5 | 0.6912 | 0.2500 | 0.1762 | 0.026* | |
C6 | 0.5387 (3) | 0.2500 | −0.0580 (2) | 0.0253 (3) | |
H6 | 0.6483 | 0.2500 | −0.1227 | 0.030* | |
H1 | 0.345 (3) | 0.2500 | −0.257 (3) | 0.030* | |
H7 | 0.545 (3) | 0.2500 | 0.443 (3) | 0.030* | |
H8 | 0.209 (2) | 0.139 (2) | 0.4769 (18) | 0.030* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.01569 (19) | 0.0324 (2) | 0.0216 (2) | 0.000 | −0.00012 (12) | 0.000 |
N1 | 0.0429 (8) | 0.0248 (7) | 0.0120 (6) | 0.000 | 0.0026 (5) | 0.000 |
N7 | 0.0150 (6) | 0.0346 (7) | 0.0133 (5) | 0.000 | 0.0005 (4) | 0.000 |
N8 | 0.0191 (6) | 0.0297 (7) | 0.0151 (6) | 0.000 | 0.0041 (5) | 0.000 |
C2 | 0.0305 (8) | 0.0311 (8) | 0.0191 (7) | 0.000 | −0.0058 (6) | 0.000 |
C3 | 0.0201 (7) | 0.0335 (8) | 0.0174 (7) | 0.000 | −0.0003 (5) | 0.000 |
C4 | 0.0197 (7) | 0.0202 (7) | 0.0150 (6) | 0.000 | 0.0012 (5) | 0.000 |
C5 | 0.0206 (7) | 0.0228 (7) | 0.0209 (7) | 0.000 | 0.0044 (5) | 0.000 |
C6 | 0.0345 (8) | 0.0216 (7) | 0.0215 (7) | 0.000 | 0.0114 (6) | 0.000 |
N1—C2 | 1.345 (2) | C2—H2 | 0.9500 |
N1—C6 | 1.348 (2) | C3—C4 | 1.416 (2) |
N1—H1 | 0.89 (2) | C3—H3 | 0.9500 |
N7—C4 | 1.3317 (18) | C4—C5 | 1.422 (2) |
N7—N8 | 1.4097 (17) | C5—C6 | 1.361 (2) |
N7—H7 | 0.89 (2) | C5—H5 | 0.9500 |
N8—H8 | 0.849 (14) | C6—H6 | 0.9500 |
C2—C3 | 1.368 (2) | ||
C2—N1—C6 | 120.97 (13) | C2—C3—H3 | 120.4 |
C2—N1—H1 | 118.7 (13) | C4—C3—H3 | 120.4 |
C6—N1—H1 | 120.3 (13) | N7—C4—C3 | 122.96 (14) |
C4—N7—N8 | 123.64 (12) | N7—C4—C5 | 119.47 (13) |
C4—N7—H7 | 120.4 (13) | C3—C4—C5 | 117.58 (13) |
N8—N7—H7 | 115.9 (13) | C6—C5—C4 | 119.71 (15) |
N7—N8—H8 | 108.3 (10) | C6—C5—H5 | 120.1 |
N1—C2—C3 | 121.48 (15) | C4—C5—H5 | 120.1 |
N1—C2—H2 | 119.3 | N1—C6—C5 | 121.05 (15) |
C3—C2—H2 | 119.3 | N1—C6—H6 | 119.5 |
C2—C3—C4 | 119.21 (15) | C5—C6—H6 | 119.5 |
C6—N1—C2—C3 | 0.0 | C2—C3—C4—C5 | 0.0 |
N1—C2—C3—C4 | 0.0 | N7—C4—C5—C6 | 180.0 |
N8—N7—C4—C3 | 0.0 | C3—C4—C5—C6 | 0.0 |
N8—N7—C4—C5 | 180.0 | C2—N1—C6—C5 | 0.0 |
C2—C3—C4—N7 | 180.0 | C4—C5—C6—N1 | 0.0 |
D—H···A | D—H | H···A | D···A | D—H···A |
N7—H7···Cl1 | 0.89 (2) | 2.25 (2) | 3.1358 (14) | 177 (2) |
N8—H8···Cl1i | 0.849 (14) | 2.905 (14) | 3.1970 (14) | 102.4 (11) |
N1—H1···N8ii | 0.89 (2) | 1.92 (2) | 2.8069 (19) | 172 (2) |
Symmetry codes: (i) x−1, y, z; (ii) x, y, z−1. |
Experimental details
Crystal data | |
Chemical formula | C5H8N3+·Cl− |
Mr | 145.59 |
Crystal system, space group | Monoclinic, P21/m |
Temperature (K) | 173 |
a, b, c (Å) | 6.9526 (11), 6.434 (1), 7.7432 (12) |
β (°) | 95.316 (1) |
V (Å3) | 344.89 (9) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.46 |
Crystal size (mm) | 0.27 × 0.19 × 0.18 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2006) |
Tmin, Tmax | 0.884, 0.920 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4968, 855, 840 |
Rint | 0.016 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.022, 0.060, 1.13 |
No. of reflections | 855 |
No. of parameters | 63 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.32, −0.20 |
Computer programs: APEX2 (Bruker, 2006), SAINT-Plus (Bruker, 2006), SHELXD (Sheldrick, 2008), SHELXTL (Sheldrick, 2008), Mercury (Macrae et al., 2006), publCIF (Westrip, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N7—H7···Cl1 | 0.89 (2) | 2.25 (2) | 3.1358 (14) | 176.7 (19) |
N8—H8···Cl1i | 0.849 (14) | 2.905 (14) | 3.1970 (14) | 102.4 (11) |
N1—H1···N8ii | 0.89 (2) | 1.92 (2) | 2.8069 (19) | 172.0 (19) |
Symmetry codes: (i) x−1, y, z; (ii) x, y, z−1. |
Acknowledgements
The Natural Sciences and Engineering Research Council of Canada (NSERC) is gratefully acknowledged for a Discovery Grant and the Alberta Ingenuity Fund for a studentship (MRH). The diffractometer was purchased with the help of NSERC and the University of Lethbridge.
References
Bruker (2006). APEX2, SAINT-Plus and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Hammerl, A., Holl, G., Kaiser, M., Klapotke, T. M., Mayer, P., Nöth, H. & Warchhold, M. (2001). Z. Anorg. Allg. Chem. 627, 1477–1482. Web of Science CSD CrossRef CAS Google Scholar
Lima, G. M. de, Wardell, J. L. & Harrison, W. T. A. (2008). Acta Cryst. E64, o330. Web of Science CSD CrossRef IUCr Journals Google Scholar
Macrae, C. F., Edgington, P. R., McCabe, P., Pidcock, E., Shields, G. P., Taylor, R., Towler, M. & van de Streek, J. (2006). J. Appl. Cryst. 39, 453–457. Web of Science CrossRef CAS IUCr Journals Google Scholar
Mann, F. G., Prior, A. F. & Willcox, T. J. (1959). J. Chem. Soc. pp. 3830–3834. CrossRef Web of Science Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Westrip, S. J. (2009). publCIF. In preparation. Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
In the structure of the title compound, (I), (Figure 1.) both ions crystallize on the mirror plane perpendicular to b with a separation of b/2 (3.217 Å). In consequence, the N7, N8 and N7—H atom are coplanar with the aromatic ring, and thus the out-of-plane H atoms on N8 are in a staggered conformation with respect to the N7—H atom. The local conformation of the aryl-hydrazine is similar to that observed in only two known crystal structures, both of phenylhydrazine, namely [(C6H5NHNH2)H]2(N3),(II), Hammerl et al. (2001) and [C6H5NHNH3]Cl, (III), Lima et al. (2008). The former contains both PhNHNH2 and PhNHNH3+ in the lattice. However, in (I) it is the more basic pyridine N1 that is protonated, but which also forms a strong H bond to the terminal hydrazinyl N8 (D···A = 2.8069 (19) Å). This bond is comparable in strength to the linking H bond between PhNHNH2 and PhNHNH3+ in (II). The structures of (II) and (III) are also composed of essentially flat sheets of Aryl—N units, with inter-planar separations of 3.497 and 3.378 Å, respectively.
There are additional H bonds between the N7—H and the N8—H atoms and the chloride anion which, in conjunction with the infinite chains of N1—H to N8 bonds, result in the formation of planar hydrogen-bonded sheets (Figure 2), with N···Cl distances very comparable to those found in (III).
In summary, the structure of (I) has a higher symmetry than (II) and (III) and is tightly packed due to a network of strong H bonds.