organic compounds
Tris{2-[4-(2-pyridyl)pyrimidin-2-ylsulfanyl]ethyl}amine
aSchool of Chemistry and Chemical Engineering, Southeast University, Nanjing 211189, People's Republic of China
*Correspondence e-mail: cep02chl@yahoo.com.cn
The tripodal character of the title compound, C33H30N10S3, arises from the three thioether arms surrounding a central amine N atom. The three arms have approximately the same conformation but distinct geometries in a trans–trans–cis conformation, resulting in a short pyridine–sulfanyl N⋯S distance of 4.320 (7) Å. The distances of the central N atom to the N atoms of three pyridine rings in the arms are 8.305 (7), 8.032 (7) and 5.076 (9)Å. In the crystal, molecules are joined into a three-dimensional supramolecular network via effective π–π stacking between adjacent heterocycles [centroid–centroid distances of 3.700 (3)–4.118 (4) Å between adjacent interlayer pyrimidine rings and 3.676 (4) Å between the pyridine rings].
Related literature
For the use of tripodal ligands in crystal engineering, see: Hammes et al. (1998); Hiraoka et al. (2005). For the use of thioether ligands in crystal engineering, see: Dong et al. (2008a,b); Zhang et al. (2008).
Experimental
Crystal data
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Data collection: SMART (Bruker, 2000); cell SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
10.1107/S160053680902741X/si2186sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053680902741X/si2186Isup2.hkl
An ethanol solution (50 ml) of tris(2-bromoethyl)amine (3.35 g, 10 mmol) was added to a dry ethanol solution (300 ml) containing 4-(pyridin-3-yl)pyrimidine-2-thiol (5.67 g, 30 mmol) and sodium hydroxide (1.20 g, 30 mmol). The solution was stirred and refluxed for 8 h. Yellow precipitates were filtered out, washed by water and ethanol, and dried in vacuum. Yield (3.24 g) 48.9%. The yellow crystals were obtained after the filter slowly evaporated.
All the H atoms were positioned geometrically and refined using a riding model with C—H = 0.93–0.97 Å and with Uiso(H) = 1.2Uiso(C).
Data collection: SMART (Bruker, 2000); cell
SAINT (Bruker, 2000); data reduction: SAINT (Bruker, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).C33H30N10S3 | F(000) = 1384 |
Mr = 662.85 | Dx = 1.393 Mg m−3 |
Orthorhombic, Pna21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2c -2n | Cell parameters from 787 reflections |
a = 16.169 (3) Å | θ = 2.4–28.0° |
b = 25.670 (5) Å | µ = 0.28 mm−1 |
c = 7.6166 (14) Å | T = 295 K |
V = 3161.3 (10) Å3 | Block, yellow |
Z = 4 | 0.30 × 0.20 × 0.20 mm |
Bruker SMART CCD diffractometer | 6104 independent reflections |
Radiation source: fine-focus sealed tube | 3099 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.105 |
ϕ and ω scans | θmax = 26.0°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2000) | h = −19→18 |
Tmin = 0.922, Tmax = 0.947 | k = −25→31 |
16502 measured reflections | l = −9→9 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.070 | H-atom parameters constrained |
wR(F2) = 0.123 | w = 1/[σ2(Fo2) + (0.0045P)2 + 0.8P] where P = (Fo2 + 2Fc2)/3 |
S = 1.06 | (Δ/σ)max < 0.001 |
6104 reflections | Δρmax = 0.41 e Å−3 |
415 parameters | Δρmin = −0.25 e Å−3 |
1 restraint | Absolute structure: Flack (1983), 2750 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.33 (12) |
C33H30N10S3 | V = 3161.3 (10) Å3 |
Mr = 662.85 | Z = 4 |
Orthorhombic, Pna21 | Mo Kα radiation |
a = 16.169 (3) Å | µ = 0.28 mm−1 |
b = 25.670 (5) Å | T = 295 K |
c = 7.6166 (14) Å | 0.30 × 0.20 × 0.20 mm |
Bruker SMART CCD diffractometer | 6104 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2000) | 3099 reflections with I > 2σ(I) |
Tmin = 0.922, Tmax = 0.947 | Rint = 0.105 |
16502 measured reflections |
R[F2 > 2σ(F2)] = 0.070 | H-atom parameters constrained |
wR(F2) = 0.123 | Δρmax = 0.41 e Å−3 |
S = 1.06 | Δρmin = −0.25 e Å−3 |
6104 reflections | Absolute structure: Flack (1983), 2750 Friedel pairs |
415 parameters | Absolute structure parameter: −0.33 (12) |
1 restraint |
Experimental. A trial to refine the structure by interchanging the C16 and N6 atoms resulted in slightly worse R-values and larger anisotropic displacement parameters. A further trial to treat the N6 pyridine as a rotational disordered group, using EADP and PART instructions did not show any improvement. The large negative Flack parameter may result from an unresolved twinning problem or from tiny intergrown material that contribute to additional intensities in the data set. This may also explain the relatively large Rint and R(sigma) values after absorption correction and data reduction. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.83661 (8) | 0.33092 (6) | 0.0846 (3) | 0.0824 (6) | |
S2 | 0.41967 (9) | 0.46398 (6) | 0.0662 (3) | 0.0677 (5) | |
S3 | 0.78712 (8) | 0.58482 (6) | 0.0894 (3) | 0.0695 (5) | |
C1 | 0.9379 (3) | 0.3547 (2) | 0.1233 (9) | 0.0600 (19) | |
C2 | 1.0620 (3) | 0.3334 (3) | 0.2283 (10) | 0.071 (2) | |
H2 | 1.0985 | 0.3099 | 0.2795 | 0.085* | |
C3 | 1.0900 (4) | 0.3824 (2) | 0.1879 (9) | 0.0692 (19) | |
H3 | 1.1450 | 0.3915 | 0.2062 | 0.083* | |
C4 | 1.0356 (3) | 0.4172 (2) | 0.1206 (7) | 0.0461 (15) | |
C5 | 1.0572 (3) | 0.4721 (2) | 0.0830 (10) | 0.0564 (15) | |
C6 | 1.1378 (3) | 0.4874 (3) | 0.0554 (11) | 0.077 (2) | |
H6 | 1.1787 | 0.4619 | 0.0539 | 0.092* | |
C7 | 1.1010 (4) | 0.5729 (3) | 0.0369 (11) | 0.093 (3) | |
H7 | 1.1157 | 0.6078 | 0.0236 | 0.112* | |
C8 | 1.0201 (4) | 0.5610 (2) | 0.0618 (11) | 0.080 (2) | |
H8 | 0.9801 | 0.5870 | 0.0600 | 0.096* | |
C9 | 0.9983 (3) | 0.5105 (2) | 0.0894 (10) | 0.0723 (18) | |
H9 | 0.9435 | 0.5020 | 0.1126 | 0.087* | |
C10 | 0.3913 (4) | 0.4001 (2) | 0.0151 (8) | 0.0567 (18) | |
C11 | 0.2849 (4) | 0.3452 (3) | −0.0115 (9) | 0.074 (2) | |
H11 | 0.2288 | 0.3377 | −0.0033 | 0.089* | |
C12 | 0.3360 (4) | 0.3062 (3) | −0.0749 (9) | 0.0715 (19) | |
H12 | 0.3159 | 0.2739 | −0.1098 | 0.086* | |
C13 | 0.4198 (4) | 0.3189 (2) | −0.0827 (7) | 0.0521 (16) | |
C14 | 0.4821 (4) | 0.2805 (3) | −0.1415 (9) | 0.0622 (18) | |
C15 | 0.4630 (5) | 0.2367 (3) | −0.2312 (10) | 0.084 (2) | |
H15 | 0.4077 | 0.2298 | −0.2550 | 0.101* | |
C16 | 0.5189 (7) | 0.2033 (4) | −0.2863 (13) | 0.105 (3) | |
H16 | 0.5044 | 0.1741 | −0.3516 | 0.126* | |
C17 | 0.5973 (8) | 0.2132 (4) | −0.2445 (14) | 0.130 (4) | |
H17 | 0.6364 | 0.1889 | −0.2805 | 0.155* | |
C18 | 0.5641 (5) | 0.2892 (3) | −0.1054 (10) | 0.083 (2) | |
H18 | 0.5785 | 0.3194 | −0.0452 | 0.099* | |
C19 | 0.7194 (3) | 0.6319 (2) | 0.0044 (7) | 0.0524 (16) | |
C20 | 0.7130 (4) | 0.7117 (2) | −0.1116 (8) | 0.0663 (18) | |
H20 | 0.7384 | 0.7419 | −0.1517 | 0.080* | |
C21 | 0.6267 (3) | 0.7084 (2) | −0.1158 (8) | 0.0607 (17) | |
H21 | 0.5946 | 0.7356 | −0.1588 | 0.073* | |
C22 | 0.5919 (3) | 0.6642 (2) | −0.0549 (7) | 0.0412 (13) | |
C23 | 0.5002 (3) | 0.6563 (2) | −0.0429 (7) | 0.0412 (13) | |
C24 | 0.4472 (4) | 0.6917 (2) | −0.1183 (9) | 0.0606 (17) | |
H24 | 0.4703 | 0.7185 | −0.1842 | 0.073* | |
C25 | 0.3355 (3) | 0.6511 (3) | −0.0095 (9) | 0.069 (2) | |
H25 | 0.2784 | 0.6494 | 0.0051 | 0.082* | |
C26 | 0.3812 (3) | 0.6136 (2) | 0.0675 (9) | 0.0636 (17) | |
H26 | 0.3566 | 0.5866 | 0.1302 | 0.076* | |
C27 | 0.4666 (3) | 0.6166 (2) | 0.0496 (8) | 0.0523 (16) | |
H27 | 0.5004 | 0.5915 | 0.1008 | 0.063* | |
C28 | 0.7832 (3) | 0.3846 (2) | −0.0206 (9) | 0.0719 (19) | |
H28A | 0.8232 | 0.4102 | −0.0603 | 0.086* | |
H28B | 0.7532 | 0.3719 | −0.1222 | 0.086* | |
C29 | 0.7245 (3) | 0.4093 (2) | 0.1049 (9) | 0.0671 (17) | |
H29A | 0.6929 | 0.3824 | 0.1639 | 0.080* | |
H29B | 0.7554 | 0.4283 | 0.1932 | 0.080* | |
C30 | 0.5859 (3) | 0.4472 (2) | 0.1069 (8) | 0.0635 (17) | |
H30A | 0.5698 | 0.4127 | 0.1462 | 0.076* | |
H30B | 0.5893 | 0.4699 | 0.2085 | 0.076* | |
C31 | 0.5245 (3) | 0.4676 (2) | −0.0191 (8) | 0.0654 (19) | |
H31A | 0.5278 | 0.4478 | −0.1273 | 0.078* | |
H31B | 0.5376 | 0.5036 | −0.0461 | 0.078* | |
C32 | 0.7063 (3) | 0.4951 (2) | −0.0204 (7) | 0.0576 (17) | |
H32A | 0.6712 | 0.5140 | −0.1019 | 0.069* | |
H32B | 0.7587 | 0.4889 | −0.0787 | 0.069* | |
C33 | 0.7220 (3) | 0.5299 (2) | 0.1391 (8) | 0.066 (2) | |
H33A | 0.7479 | 0.5094 | 0.2309 | 0.079* | |
H33B | 0.6695 | 0.5425 | 0.1837 | 0.079* | |
N1 | 0.9562 (2) | 0.40316 (17) | 0.0839 (7) | 0.0566 (12) | |
N2 | 0.9844 (3) | 0.31788 (18) | 0.1973 (7) | 0.0644 (15) | |
N3 | 1.1603 (3) | 0.5370 (2) | 0.0307 (9) | 0.097 (2) | |
N4 | 0.4466 (3) | 0.36629 (19) | −0.0387 (6) | 0.0526 (13) | |
N5 | 0.3090 (3) | 0.39190 (19) | 0.0383 (7) | 0.0636 (15) | |
N6 | 0.6259 (4) | 0.2555 (3) | −0.1540 (10) | 0.121 (3) | |
N7 | 0.6377 (2) | 0.62430 (16) | 0.0073 (6) | 0.0452 (12) | |
N8 | 0.7597 (3) | 0.6734 (2) | −0.0528 (7) | 0.0618 (14) | |
N9 | 0.3649 (3) | 0.6902 (2) | −0.1038 (8) | 0.0729 (16) | |
N10 | 0.6680 (3) | 0.44486 (18) | 0.0158 (6) | 0.0588 (14) |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0393 (8) | 0.0613 (10) | 0.1466 (17) | 0.0050 (7) | −0.0129 (14) | 0.0014 (14) |
S2 | 0.0528 (9) | 0.0678 (11) | 0.0827 (12) | −0.0013 (7) | 0.0077 (11) | −0.0170 (12) |
S3 | 0.0376 (7) | 0.0688 (10) | 0.1021 (13) | 0.0047 (7) | −0.0071 (11) | 0.0067 (13) |
C1 | 0.033 (3) | 0.055 (4) | 0.092 (6) | −0.002 (3) | −0.011 (3) | −0.011 (4) |
C2 | 0.044 (4) | 0.057 (4) | 0.112 (6) | 0.012 (3) | −0.017 (4) | 0.015 (4) |
C3 | 0.041 (4) | 0.067 (5) | 0.100 (6) | 0.000 (3) | −0.017 (4) | 0.009 (4) |
C4 | 0.039 (3) | 0.051 (4) | 0.048 (4) | 0.008 (3) | 0.000 (3) | 0.005 (3) |
C5 | 0.046 (3) | 0.057 (4) | 0.066 (4) | 0.007 (3) | 0.002 (4) | 0.005 (4) |
C6 | 0.048 (4) | 0.074 (4) | 0.109 (6) | 0.004 (3) | 0.010 (5) | 0.027 (5) |
C7 | 0.082 (5) | 0.064 (5) | 0.134 (8) | −0.002 (4) | −0.012 (5) | 0.028 (5) |
C8 | 0.049 (4) | 0.063 (4) | 0.129 (7) | 0.011 (3) | −0.005 (5) | 0.019 (5) |
C9 | 0.047 (3) | 0.067 (4) | 0.103 (5) | 0.001 (3) | 0.002 (4) | 0.027 (5) |
C10 | 0.054 (4) | 0.051 (4) | 0.065 (5) | 0.006 (3) | −0.002 (3) | −0.004 (3) |
C11 | 0.045 (4) | 0.070 (5) | 0.106 (6) | −0.005 (4) | −0.009 (4) | 0.012 (4) |
C12 | 0.065 (5) | 0.055 (4) | 0.094 (6) | −0.001 (4) | 0.004 (4) | 0.007 (4) |
C13 | 0.052 (4) | 0.060 (5) | 0.044 (4) | 0.013 (3) | −0.001 (3) | 0.014 (3) |
C14 | 0.069 (5) | 0.055 (5) | 0.063 (5) | 0.007 (4) | 0.003 (4) | 0.014 (4) |
C15 | 0.100 (6) | 0.053 (5) | 0.100 (7) | 0.008 (5) | 0.013 (5) | −0.002 (5) |
C16 | 0.147 (9) | 0.075 (7) | 0.094 (7) | 0.015 (7) | 0.007 (8) | 0.004 (5) |
C17 | 0.196 (12) | 0.086 (8) | 0.107 (9) | 0.075 (9) | 0.048 (9) | 0.005 (6) |
C18 | 0.082 (5) | 0.068 (5) | 0.098 (6) | 0.034 (4) | 0.021 (5) | 0.008 (4) |
C19 | 0.048 (4) | 0.050 (4) | 0.059 (5) | 0.001 (3) | 0.000 (3) | −0.007 (3) |
C20 | 0.055 (4) | 0.046 (4) | 0.098 (5) | −0.014 (3) | 0.009 (4) | 0.006 (4) |
C21 | 0.037 (3) | 0.054 (4) | 0.090 (5) | 0.004 (3) | 0.006 (3) | 0.012 (4) |
C22 | 0.040 (3) | 0.043 (4) | 0.041 (4) | −0.001 (3) | 0.005 (3) | 0.001 (3) |
C23 | 0.041 (3) | 0.044 (4) | 0.039 (4) | 0.002 (3) | 0.002 (3) | 0.001 (3) |
C24 | 0.053 (4) | 0.042 (4) | 0.087 (5) | −0.006 (3) | −0.001 (4) | 0.010 (4) |
C25 | 0.031 (3) | 0.087 (5) | 0.088 (6) | 0.000 (4) | 0.001 (3) | −0.008 (4) |
C26 | 0.044 (3) | 0.071 (4) | 0.076 (5) | −0.010 (3) | 0.001 (4) | −0.005 (5) |
C27 | 0.042 (3) | 0.058 (4) | 0.057 (4) | 0.000 (3) | −0.003 (3) | 0.005 (4) |
C28 | 0.045 (3) | 0.082 (5) | 0.088 (5) | 0.009 (3) | −0.012 (4) | 0.001 (4) |
C29 | 0.070 (4) | 0.059 (4) | 0.072 (5) | 0.008 (3) | 0.004 (4) | 0.004 (4) |
C30 | 0.059 (4) | 0.073 (4) | 0.058 (4) | 0.012 (3) | −0.004 (4) | 0.008 (4) |
C31 | 0.061 (4) | 0.066 (4) | 0.069 (5) | −0.005 (3) | 0.013 (4) | −0.002 (4) |
C32 | 0.045 (4) | 0.081 (5) | 0.047 (4) | 0.020 (3) | −0.005 (3) | −0.003 (4) |
C33 | 0.044 (4) | 0.068 (4) | 0.085 (6) | 0.004 (3) | 0.001 (3) | 0.020 (4) |
N1 | 0.039 (2) | 0.053 (3) | 0.078 (4) | 0.003 (2) | 0.000 (3) | −0.018 (3) |
N2 | 0.043 (3) | 0.049 (3) | 0.101 (4) | 0.007 (3) | −0.010 (3) | 0.007 (3) |
N3 | 0.062 (4) | 0.081 (4) | 0.148 (7) | −0.002 (3) | 0.017 (4) | 0.030 (5) |
N4 | 0.048 (3) | 0.054 (3) | 0.056 (3) | 0.006 (3) | 0.004 (3) | 0.000 (3) |
N5 | 0.044 (3) | 0.065 (3) | 0.082 (5) | 0.003 (2) | 0.001 (3) | 0.006 (3) |
N6 | 0.103 (5) | 0.120 (6) | 0.139 (7) | 0.053 (5) | 0.029 (5) | 0.007 (5) |
N7 | 0.031 (2) | 0.040 (3) | 0.064 (4) | 0.001 (2) | −0.003 (2) | 0.001 (2) |
N8 | 0.033 (3) | 0.056 (3) | 0.097 (4) | −0.008 (3) | 0.003 (3) | −0.004 (3) |
N9 | 0.039 (3) | 0.071 (4) | 0.109 (5) | 0.009 (3) | −0.009 (3) | 0.002 (4) |
N10 | 0.051 (3) | 0.052 (3) | 0.073 (4) | 0.009 (3) | 0.002 (3) | 0.003 (3) |
S1—C1 | 1.773 (5) | C17—H17 | 0.9300 |
S1—C28 | 1.812 (6) | C18—N6 | 1.372 (8) |
S2—C10 | 1.747 (6) | C18—H18 | 0.9300 |
S2—C31 | 1.818 (6) | C19—N8 | 1.324 (6) |
S3—C19 | 1.754 (6) | C19—N7 | 1.334 (6) |
S3—C33 | 1.799 (5) | C20—N8 | 1.318 (6) |
C1—N1 | 1.312 (6) | C20—C21 | 1.399 (7) |
C1—N2 | 1.333 (7) | C20—H20 | 0.9300 |
C2—N2 | 1.336 (6) | C21—C22 | 1.348 (7) |
C2—C3 | 1.372 (8) | C21—H21 | 0.9300 |
C2—H2 | 0.9300 | C22—N7 | 1.350 (6) |
C3—C4 | 1.356 (7) | C22—C23 | 1.500 (7) |
C3—H3 | 0.9300 | C23—C27 | 1.353 (7) |
C4—N1 | 1.361 (6) | C23—C24 | 1.373 (7) |
C4—C5 | 1.479 (7) | C24—N9 | 1.337 (7) |
C5—C9 | 1.371 (7) | C24—H24 | 0.9300 |
C5—C6 | 1.378 (7) | C25—N9 | 1.323 (7) |
C6—N3 | 1.338 (7) | C25—C26 | 1.350 (7) |
C6—H6 | 0.9300 | C25—H25 | 0.9300 |
C7—N3 | 1.331 (7) | C26—C27 | 1.389 (6) |
C7—C8 | 1.358 (8) | C26—H26 | 0.9300 |
C7—H7 | 0.9300 | C27—H27 | 0.9300 |
C8—C9 | 1.359 (7) | C28—C29 | 1.489 (7) |
C8—H8 | 0.9300 | C28—H28A | 0.9700 |
C9—H9 | 0.9300 | C28—H28B | 0.9700 |
C10—N4 | 1.312 (6) | C29—N10 | 1.459 (7) |
C10—N5 | 1.358 (6) | C29—H29A | 0.9700 |
C11—N5 | 1.317 (7) | C29—H29B | 0.9700 |
C11—C12 | 1.385 (8) | C30—C31 | 1.477 (7) |
C11—H11 | 0.9300 | C30—N10 | 1.499 (6) |
C12—C13 | 1.394 (7) | C30—H30A | 0.9700 |
C12—H12 | 0.9300 | C30—H30B | 0.9700 |
C13—N4 | 1.335 (7) | C31—H31A | 0.9700 |
C13—C14 | 1.479 (8) | C31—H31B | 0.9700 |
C14—C15 | 1.352 (8) | C32—N10 | 1.457 (7) |
C14—C18 | 1.372 (8) | C32—C33 | 1.530 (7) |
C15—C16 | 1.314 (10) | C32—H32A | 0.9700 |
C15—H15 | 0.9300 | C32—H32B | 0.9700 |
C16—C17 | 1.331 (12) | C33—H33A | 0.9700 |
C16—H16 | 0.9300 | C33—H33B | 0.9700 |
C17—N6 | 1.367 (12) | ||
C1—S1—C28 | 104.5 (3) | C21—C22—N7 | 122.1 (5) |
C10—S2—C31 | 102.3 (3) | C21—C22—C23 | 123.2 (5) |
C19—S3—C33 | 104.6 (3) | N7—C22—C23 | 114.7 (5) |
N1—C1—N2 | 129.9 (5) | C27—C23—C24 | 117.8 (5) |
N1—C1—S1 | 119.8 (4) | C27—C23—C22 | 122.0 (5) |
N2—C1—S1 | 110.3 (5) | C24—C23—C22 | 120.1 (5) |
N2—C2—C3 | 122.9 (6) | N9—C24—C23 | 124.6 (6) |
N2—C2—H2 | 118.5 | N9—C24—H24 | 117.7 |
C3—C2—H2 | 118.5 | C23—C24—H24 | 117.7 |
C4—C3—C2 | 118.4 (5) | N9—C25—C26 | 125.5 (6) |
C4—C3—H3 | 120.8 | N9—C25—H25 | 117.3 |
C2—C3—H3 | 120.8 | C26—C25—H25 | 117.3 |
C3—C4—N1 | 120.9 (5) | C25—C26—C27 | 117.5 (6) |
C3—C4—C5 | 123.3 (5) | C25—C26—H26 | 121.2 |
N1—C4—C5 | 115.8 (5) | C27—C26—H26 | 121.2 |
C9—C5—C6 | 117.3 (5) | C23—C27—C26 | 119.5 (5) |
C9—C5—C4 | 120.9 (5) | C23—C27—H27 | 120.3 |
C6—C5—C4 | 121.6 (5) | C26—C27—H27 | 120.3 |
N3—C6—C5 | 123.3 (5) | C29—C28—S1 | 110.1 (5) |
N3—C6—H6 | 118.3 | C29—C28—H28A | 109.6 |
C5—C6—H6 | 118.3 | S1—C28—H28A | 109.6 |
N3—C7—C8 | 122.9 (6) | C29—C28—H28B | 109.6 |
N3—C7—H7 | 118.6 | S1—C28—H28B | 109.6 |
C8—C7—H7 | 118.6 | H28A—C28—H28B | 108.2 |
C7—C8—C9 | 119.1 (6) | N10—C29—C28 | 111.6 (6) |
C7—C8—H8 | 120.4 | N10—C29—H29A | 109.3 |
C9—C8—H8 | 120.4 | C28—C29—H29A | 109.3 |
C8—C9—C5 | 120.0 (5) | N10—C29—H29B | 109.3 |
C8—C9—H9 | 120.0 | C28—C29—H29B | 109.3 |
C5—C9—H9 | 120.0 | H29A—C29—H29B | 108.0 |
N4—C10—N5 | 127.4 (5) | C31—C30—N10 | 108.0 (5) |
N4—C10—S2 | 120.7 (4) | C31—C30—H30A | 110.1 |
N5—C10—S2 | 111.9 (4) | N10—C30—H30A | 110.1 |
N5—C11—C12 | 125.6 (6) | C31—C30—H30B | 110.1 |
N5—C11—H11 | 117.2 | N10—C30—H30B | 110.1 |
C12—C11—H11 | 117.2 | H30A—C30—H30B | 108.4 |
C11—C12—C13 | 115.2 (6) | C30—C31—S2 | 112.1 (4) |
C11—C12—H12 | 122.4 | C30—C31—H31A | 109.2 |
C13—C12—H12 | 122.4 | S2—C31—H31A | 109.2 |
N4—C13—C12 | 121.2 (5) | C30—C31—H31B | 109.2 |
N4—C13—C14 | 117.4 (5) | S2—C31—H31B | 109.2 |
C12—C13—C14 | 121.3 (6) | H31A—C31—H31B | 107.9 |
C15—C14—C18 | 117.2 (7) | N10—C32—C33 | 116.0 (4) |
C15—C14—C13 | 123.4 (7) | N10—C32—H32A | 108.3 |
C18—C14—C13 | 119.4 (6) | C33—C32—H32A | 108.3 |
C16—C15—C14 | 123.1 (8) | N10—C32—H32B | 108.3 |
C16—C15—H15 | 118.4 | C33—C32—H32B | 108.3 |
C14—C15—H15 | 118.4 | H32A—C32—H32B | 107.4 |
C15—C16—C17 | 117.0 (10) | C32—C33—S3 | 112.8 (4) |
C15—C16—H16 | 121.5 | C32—C33—H33A | 109.0 |
C17—C16—H16 | 121.5 | S3—C33—H33A | 109.0 |
C16—C17—N6 | 126.5 (10) | C32—C33—H33B | 109.0 |
C16—C17—H17 | 116.8 | S3—C33—H33B | 109.0 |
N6—C17—H17 | 116.8 | H33A—C33—H33B | 107.8 |
C14—C18—N6 | 123.1 (8) | C1—N1—C4 | 114.6 (5) |
C14—C18—H18 | 118.4 | C1—N2—C2 | 113.1 (5) |
N6—C18—H18 | 118.4 | C7—N3—C6 | 117.3 (5) |
N8—C19—N7 | 127.6 (5) | C10—N4—C13 | 117.3 (5) |
N8—C19—S3 | 111.6 (4) | C11—N5—C10 | 113.1 (5) |
N7—C19—S3 | 120.8 (4) | C17—N6—C18 | 113.0 (8) |
N8—C20—C21 | 122.4 (5) | C19—N7—C22 | 115.2 (5) |
N8—C20—H20 | 118.8 | C20—N8—C19 | 115.5 (5) |
C21—C20—H20 | 118.8 | C25—N9—C24 | 115.1 (6) |
C22—C21—C20 | 117.2 (5) | C32—N10—C29 | 112.0 (4) |
C22—C21—H21 | 121.4 | C32—N10—C30 | 115.4 (4) |
C20—C21—H21 | 121.4 | C29—N10—C30 | 111.4 (5) |
Experimental details
Crystal data | |
Chemical formula | C33H30N10S3 |
Mr | 662.85 |
Crystal system, space group | Orthorhombic, Pna21 |
Temperature (K) | 295 |
a, b, c (Å) | 16.169 (3), 25.670 (5), 7.6166 (14) |
V (Å3) | 3161.3 (10) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.28 |
Crystal size (mm) | 0.30 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2000) |
Tmin, Tmax | 0.922, 0.947 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16502, 6104, 3099 |
Rint | 0.105 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.070, 0.123, 1.06 |
No. of reflections | 6104 |
No. of parameters | 415 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.41, −0.25 |
Absolute structure | Flack (1983), 2750 Friedel pairs |
Absolute structure parameter | −0.33 (12) |
Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 2000), SHELXS97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
Acknowledgements
The authors thank the Program for Young Excellent Talents in Southeast University for financial support.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Recently, tripodal ligands have attracted much attention because they can be used to construct interesting topologies such as moleular cages and boxes (Hammes et al. 1998, Hiraoka et al. 2005). Meanwhile, flexible thioethers have been well established ligands in coordination and metallosupramolecular chemistry because of their rich structural information (Dong et al. 2008a, b; Zhang et al. 2008). Herein, we report the crystal structure of the title compound, C33H30N10S3, based on a tripodal dithioether ligand -tris(2-(4-(pyridin-3-yl)pyrimidin-2-ylthio)ethyl)amine.
The tripodal character of the title compound arises from the three thioether arms surrounding a central amine nitrogen. The three arms have approximately the same conformation but distinct geometries, in a trans-trans-cis conformation (Fig. 1). The distances of the central nitrogen atom to the nitrogen atoms of three pyridine rings in the arms are 8.305 (7), 8.032 (7) and 5.076 (9)°, respectively. Two different heterocyclic rings in each arm are not coplanar with the angle of 18.0 (3), 11.9 (3) and 26.4 (2)°, respectively. The discrete molecules are joined into a three-dimensional supramolecular network via effective π—π stacking (Fig. 2) between the interlayer adjacent pyrimidine rings with the Cg3···Cg5i separation of 3.700 (3) to 4.118 (4) Å, with a torsion angle of 7.24°, and a Cg4···Cg6ii distance between pyridine rings of 3.676 (4) Å, with a torsion angle of 4.64°. Cg3 and Cg5 are the centroids of the pyrimidine rings (N5 C11 C12 C13 N4 C10) and (N8 C20 C21 C22 N7 C19), and Cg4 and Cg6 are the centroids of the pyridine rings (C14 C15 C16 C17 N6 C18) and (C23 C24 N9 C25 C26 C27). Symmetry codes: (i = 1 - x, 1 - y, 1/2 + z; ii = 1 - x, 1 - y, -1/2 + z).