organic compounds
Dimethyl trans-3-(4-bromophenyl)-2-methylisoxazolidine-4,5-dicarboxylate
aDepartment of Physics, Faculty of Arts & Science, Ondokuz Mayıs University, TR-55139 Kurupelit Samsun, Turkey, bDepartment of Chemistry, Faculty of Arts & Science, Gazi University, Ankara, Turkey, cChemical Technology Program, Denizli Higher Vocational School, Pamukkale University, TR-20159 Kınıklı, Denizli, Turkey, and dDepartment of Chemistry, Faculty of Arts & Science, Kırıkkale University, Kırıkkale, Turkey
*Correspondence e-mail: orhanb@omu.edu.tr
In the title compound, C14H16BrNO5, the isoxazolidine ring adopts an with the N atom at the flap. In the crystal, intermolecular C—H⋯N and C—H⋯O hydrogen bonds generate R33(18) ring motifs which are fused into a ribbon-like structure extending along the b axis.
Related literature
For general background, see: Confalone & Huie (1988); Torssell (1988); Frederickson (1997); Gothelf & Jorgensen (1998); Chiacchio et al. (2003); Padwa et al. (1981, 1984); Ochiai et al. (1967); Baldwin & Aube (1987); Heaney et al. (2001). For hydrogen-bond motifs, see: Bernstein et al. (1995); Etter (1990). For ring conformations, see: Cremer & Pople (1975).
Experimental
Crystal data
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Refinement
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Data collection: X-AREA (Stoe & Cie, 2002); cell X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536809032462/ci2876sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809032462/ci2876Isup2.hkl
N-Methyl-C-(4-bromophenyl)nitrone was prepared from 4-bromo benzaldehyde, N-methyl-hydroxylamine hydrochloride and sodium carbonate in CH2Cl2 according to the literature method (Heaney et al., 2001). For the preparation of the title compound, N-methyl-C-(4-bromophenyl) nitrone (453 mg, 3 mmol) and dimethylmaleate (475 mg, 3,3 mmol) were dissolved in benzene (50 ml). The reaction mixture was refluxed for 9 h, and monitored by TLC. After evaporation of the solvent, the reaction mixture was separated by
using a mixture of hexane-ethyl acetate (1:2) as the The trans-isomer was recrystallized from methanol in 3 d (m.p. 354–355 K).H atoms were positioned geometrically (C-H = 0.93–0.98 Å) and refined using a riding model with Uiso(H) = 1.2Ueq(C) and 1.5Ueq(methyl C). A rotating–group model was used for the methyl groups.
Data collection: X-AREA (Stoe & Cie, 2002); cell
X-AREA (Stoe & Cie, 2002); data reduction: X-RED32 (Stoe & Cie, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).C14H16BrNO5 | F(000) = 728 |
Mr = 358.19 | Dx = 1.529 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 15678 reflections |
a = 10.9020 (4) Å | θ = 1.9–28.0° |
b = 8.1780 (3) Å | µ = 2.67 mm−1 |
c = 17.8127 (8) Å | T = 296 K |
β = 101.622 (3)° | Block, colourless |
V = 1555.56 (11) Å3 | 0.71 × 0.60 × 0.45 mm |
Z = 4 |
Stoe IPDS II diffractometer | 3232 independent reflections |
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus | 2696 reflections with I > 2σ(I) |
Plane graphite monochromator | Rint = 0.043 |
Detector resolution: 6.67 pixels mm-1 | θmax = 26.5°, θmin = 1.9° |
ω–scan rotation method | h = −13→13 |
Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | k = −10→10 |
Tmin = 0.327, Tmax = 0.480 | l = −22→22 |
15678 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.101 | H-atom parameters constrained |
S = 1.12 | w = 1/[σ2(Fo2) + (0.0399P)2 + 1.0321P] where P = (Fo2 + 2Fc2)/3 |
3232 reflections | (Δ/σ)max = 0.001 |
193 parameters | Δρmax = 0.49 e Å−3 |
0 restraints | Δρmin = −0.93 e Å−3 |
C14H16BrNO5 | V = 1555.56 (11) Å3 |
Mr = 358.19 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.9020 (4) Å | µ = 2.67 mm−1 |
b = 8.1780 (3) Å | T = 296 K |
c = 17.8127 (8) Å | 0.71 × 0.60 × 0.45 mm |
β = 101.622 (3)° |
Stoe IPDS II diffractometer | 3232 independent reflections |
Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | 2696 reflections with I > 2σ(I) |
Tmin = 0.327, Tmax = 0.480 | Rint = 0.043 |
15678 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.101 | H-atom parameters constrained |
S = 1.12 | Δρmax = 0.49 e Å−3 |
3232 reflections | Δρmin = −0.93 e Å−3 |
193 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C2 | 0.4201 (3) | 0.5503 (4) | 0.18030 (16) | 0.0460 (7) | |
H2 | 0.4149 | 0.4978 | 0.2259 | 0.055* | |
C8 | 0.1314 (2) | 0.4572 (3) | 0.16330 (15) | 0.0371 (5) | |
H8 | 0.1754 | 0.5207 | 0.2072 | 0.044* | |
C5 | 0.4354 (3) | 0.7096 (5) | 0.04589 (18) | 0.0617 (9) | |
H5 | 0.4399 | 0.7642 | 0.0007 | 0.074* | |
C12 | 0.0010 (4) | 0.8290 (4) | 0.0637 (3) | 0.0793 (12) | |
H12C | 0.0311 | 0.9380 | 0.0761 | 0.095* | |
H12B | −0.0850 | 0.8216 | 0.0685 | 0.095* | |
H12A | 0.0074 | 0.8037 | 0.0120 | 0.095* | |
C11 | 0.0347 (3) | 0.5632 (3) | 0.11402 (16) | 0.0403 (6) | |
O3 | 0.0753 (2) | 0.7144 (3) | 0.11549 (15) | 0.0625 (6) | |
C10 | 0.3202 (3) | 0.1297 (5) | 0.1037 (2) | 0.0643 (9) | |
H10C | 0.3990 | 0.1723 | 0.0965 | 0.077* | |
H10B | 0.2642 | 0.1192 | 0.0549 | 0.077* | |
H10A | 0.3329 | 0.0243 | 0.1278 | 0.077* | |
C4 | 0.5204 (3) | 0.7411 (4) | 0.11187 (18) | 0.0473 (7) | |
C6 | 0.3420 (3) | 0.5947 (5) | 0.04732 (18) | 0.0575 (8) | |
H6 | 0.2844 | 0.5715 | 0.0025 | 0.069* | |
N1 | 0.2659 (2) | 0.2410 (3) | 0.15238 (14) | 0.0448 (5) | |
O1 | 0.14367 (19) | 0.1690 (2) | 0.15537 (13) | 0.0506 (5) | |
O2 | −0.0615 (2) | 0.5161 (3) | 0.07465 (15) | 0.0670 (7) | |
C13 | −0.0534 (3) | 0.2653 (4) | 0.17647 (19) | 0.0497 (7) | |
C14 | −0.2378 (3) | 0.3749 (6) | 0.2055 (3) | 0.0783 (12) | |
H14C | −0.2637 | 0.4566 | 0.2378 | 0.094* | |
H14B | −0.2667 | 0.2696 | 0.2183 | 0.094* | |
H14A | −0.2728 | 0.3994 | 0.1529 | 0.094* | |
O4 | −0.1095 (2) | 0.1619 (3) | 0.1377 (2) | 0.0846 (9) | |
O5 | −0.1029 (2) | 0.3738 (3) | 0.21707 (14) | 0.0628 (6) | |
Br1 | 0.64870 (3) | 0.89981 (5) | 0.11195 (2) | 0.06568 (15) | |
C3 | 0.5147 (3) | 0.6630 (4) | 0.17970 (17) | 0.0462 (7) | |
H3 | 0.5732 | 0.6857 | 0.2242 | 0.055* | |
C7 | 0.2260 (2) | 0.3988 (3) | 0.11494 (15) | 0.0385 (6) | |
H7 | 0.1817 | 0.3788 | 0.0622 | 0.046* | |
C9 | 0.0865 (3) | 0.2939 (4) | 0.19170 (16) | 0.0432 (6) | |
H9 | 0.1185 | 0.2863 | 0.2471 | 0.052* | |
C1 | 0.3332 (2) | 0.5142 (4) | 0.11427 (15) | 0.0400 (6) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C2 | 0.0426 (14) | 0.0554 (18) | 0.0379 (14) | −0.0027 (13) | 0.0028 (12) | 0.0067 (13) |
C8 | 0.0342 (12) | 0.0394 (14) | 0.0357 (13) | −0.0002 (11) | 0.0024 (11) | −0.0037 (11) |
C5 | 0.0592 (19) | 0.082 (3) | 0.0438 (17) | −0.0175 (18) | 0.0108 (15) | 0.0108 (17) |
C12 | 0.089 (3) | 0.0383 (18) | 0.097 (3) | 0.0084 (18) | −0.013 (2) | 0.005 (2) |
C11 | 0.0381 (13) | 0.0392 (15) | 0.0430 (14) | 0.0014 (11) | 0.0070 (12) | −0.0011 (12) |
O3 | 0.0635 (14) | 0.0341 (11) | 0.0769 (15) | −0.0017 (10) | −0.0164 (12) | −0.0014 (11) |
C10 | 0.060 (2) | 0.061 (2) | 0.075 (2) | 0.0151 (17) | 0.0198 (18) | −0.0072 (18) |
C4 | 0.0387 (14) | 0.0532 (17) | 0.0517 (17) | −0.0047 (13) | 0.0135 (13) | −0.0030 (14) |
C6 | 0.0530 (17) | 0.081 (2) | 0.0361 (15) | −0.0153 (17) | 0.0021 (13) | 0.0038 (16) |
N1 | 0.0378 (11) | 0.0448 (14) | 0.0520 (14) | 0.0067 (10) | 0.0094 (11) | 0.0022 (11) |
O1 | 0.0472 (11) | 0.0391 (11) | 0.0675 (14) | 0.0010 (9) | 0.0162 (10) | 0.0016 (10) |
O2 | 0.0493 (12) | 0.0642 (16) | 0.0749 (16) | −0.0133 (11) | −0.0174 (12) | 0.0165 (13) |
C13 | 0.0463 (16) | 0.0454 (17) | 0.0604 (18) | 0.0012 (14) | 0.0176 (15) | 0.0068 (15) |
C14 | 0.0518 (19) | 0.094 (3) | 0.095 (3) | 0.012 (2) | 0.030 (2) | 0.002 (2) |
O4 | 0.0544 (14) | 0.0595 (16) | 0.142 (3) | −0.0144 (12) | 0.0256 (17) | −0.0311 (18) |
O5 | 0.0482 (12) | 0.0809 (17) | 0.0622 (14) | 0.0056 (11) | 0.0182 (11) | −0.0075 (12) |
Br1 | 0.0557 (2) | 0.0767 (3) | 0.0680 (2) | −0.02186 (17) | 0.02031 (16) | 0.00019 (19) |
C3 | 0.0383 (14) | 0.0518 (17) | 0.0452 (15) | −0.0021 (12) | 0.0007 (12) | −0.0004 (14) |
C7 | 0.0352 (12) | 0.0441 (15) | 0.0345 (13) | 0.0012 (11) | 0.0026 (10) | 0.0000 (12) |
C9 | 0.0434 (14) | 0.0454 (16) | 0.0414 (14) | 0.0032 (12) | 0.0102 (12) | 0.0049 (13) |
C1 | 0.0352 (13) | 0.0477 (16) | 0.0361 (13) | 0.0005 (12) | 0.0046 (11) | 0.0011 (12) |
C2—C3 | 1.385 (4) | C10—H10A | 0.96 |
C2—C1 | 1.386 (4) | C4—C3 | 1.379 (4) |
C2—H2 | 0.93 | C4—Br1 | 1.908 (3) |
C8—C11 | 1.503 (4) | C6—C1 | 1.382 (4) |
C8—C9 | 1.542 (4) | C6—H6 | 0.93 |
C8—C7 | 1.547 (3) | N1—O1 | 1.468 (3) |
C8—H8 | 0.98 | N1—C7 | 1.478 (4) |
C5—C4 | 1.367 (5) | O1—C9 | 1.419 (3) |
C5—C6 | 1.390 (5) | C13—O4 | 1.181 (4) |
C5—H5 | 0.93 | C13—O5 | 1.326 (4) |
C12—O3 | 1.444 (4) | C13—C9 | 1.512 (4) |
C12—H12C | 0.96 | C14—O5 | 1.444 (4) |
C12—H12B | 0.96 | C14—H14C | 0.96 |
C12—H12A | 0.96 | C14—H14B | 0.96 |
C11—O2 | 1.202 (4) | C14—H14A | 0.96 |
C11—O3 | 1.312 (4) | C3—H3 | 0.93 |
C10—N1 | 1.462 (4) | C7—C1 | 1.505 (4) |
C10—H10C | 0.96 | C7—H7 | 0.98 |
C10—H10B | 0.96 | C9—H9 | 0.98 |
C3—C2—C1 | 121.2 (3) | C5—C6—H6 | 119.5 |
C3—C2—H2 | 119.4 | C10—N1—O1 | 104.5 (2) |
C1—C2—H2 | 119.4 | C10—N1—C7 | 113.2 (2) |
C11—C8—C9 | 117.3 (2) | O1—N1—C7 | 100.31 (19) |
C11—C8—C7 | 108.7 (2) | C9—O1—N1 | 102.4 (2) |
C9—C8—C7 | 101.9 (2) | O4—C13—O5 | 125.3 (3) |
C11—C8—H8 | 109.5 | O4—C13—C9 | 126.9 (3) |
C9—C8—H8 | 109.5 | O5—C13—C9 | 107.7 (3) |
C7—C8—H8 | 109.5 | O5—C14—H14C | 109.5 |
C4—C5—C6 | 119.0 (3) | O5—C14—H14B | 109.5 |
C4—C5—H5 | 120.5 | H14C—C14—H14B | 109.5 |
C6—C5—H5 | 120.5 | O5—C14—H14A | 109.5 |
O3—C12—H12C | 109.5 | H14C—C14—H14A | 109.5 |
O3—C12—H12B | 109.5 | H14B—C14—H14A | 109.5 |
H12C—C12—H12B | 109.5 | C13—O5—C14 | 116.2 (3) |
O3—C12—H12A | 109.5 | C4—C3—C2 | 118.7 (3) |
H12C—C12—H12A | 109.5 | C4—C3—H3 | 120.6 |
H12B—C12—H12A | 109.5 | C2—C3—H3 | 120.6 |
O2—C11—O3 | 124.4 (3) | N1—C7—C1 | 113.1 (2) |
O2—C11—C8 | 125.7 (3) | N1—C7—C8 | 100.8 (2) |
O3—C11—C8 | 109.8 (2) | C1—C7—C8 | 114.6 (2) |
C11—O3—C12 | 117.1 (3) | N1—C7—H7 | 109.3 |
N1—C10—H10C | 109.5 | C1—C7—H7 | 109.3 |
N1—C10—H10B | 109.5 | C8—C7—H7 | 109.3 |
H10C—C10—H10B | 109.5 | O1—C9—C13 | 109.1 (2) |
N1—C10—H10A | 109.5 | O1—C9—C8 | 106.0 (2) |
H10C—C10—H10A | 109.5 | C13—C9—C8 | 116.8 (2) |
H10B—C10—H10A | 109.5 | O1—C9—H9 | 108.2 |
C5—C4—C3 | 121.5 (3) | C13—C9—H9 | 108.2 |
C5—C4—Br1 | 120.0 (2) | C8—C9—H9 | 108.2 |
C3—C4—Br1 | 118.5 (2) | C6—C1—C2 | 118.5 (3) |
C1—C6—C5 | 121.1 (3) | C6—C1—C7 | 119.6 (3) |
C1—C6—H6 | 119.5 | C2—C1—C7 | 121.8 (2) |
C9—C8—C11—O2 | −25.5 (4) | C9—C8—C7—N1 | −26.7 (2) |
C7—C8—C11—O2 | 89.3 (3) | C11—C8—C7—C1 | 87.0 (3) |
C9—C8—C11—O3 | 159.4 (2) | C9—C8—C7—C1 | −148.5 (2) |
C7—C8—C11—O3 | −85.8 (3) | N1—O1—C9—C13 | 161.6 (2) |
O2—C11—O3—C12 | −2.7 (5) | N1—O1—C9—C8 | 35.1 (3) |
C8—C11—O3—C12 | 172.4 (3) | O4—C13—C9—O1 | −3.5 (5) |
C6—C5—C4—C3 | −0.8 (5) | O5—C13—C9—O1 | 174.0 (2) |
C6—C5—C4—Br1 | −179.4 (3) | O4—C13—C9—C8 | 116.5 (4) |
C4—C5—C6—C1 | 0.8 (6) | O5—C13—C9—C8 | −65.9 (3) |
C10—N1—O1—C9 | −170.5 (2) | C11—C8—C9—O1 | 113.7 (3) |
C7—N1—O1—C9 | −53.0 (2) | C7—C8—C9—O1 | −4.9 (3) |
O4—C13—O5—C14 | −7.2 (5) | C11—C8—C9—C13 | −8.0 (4) |
C9—C13—O5—C14 | 175.2 (3) | C7—C8—C9—C13 | −126.6 (3) |
C5—C4—C3—C2 | 0.0 (5) | C5—C6—C1—C2 | −0.2 (5) |
Br1—C4—C3—C2 | 178.6 (2) | C5—C6—C1—C7 | 176.0 (3) |
C1—C2—C3—C4 | 0.7 (5) | C3—C2—C1—C6 | −0.6 (5) |
C10—N1—C7—C1 | −77.9 (3) | C3—C2—C1—C7 | −176.7 (3) |
O1—N1—C7—C1 | 171.2 (2) | N1—C7—C1—C6 | 133.1 (3) |
C10—N1—C7—C8 | 159.2 (2) | C8—C7—C1—C6 | −112.1 (3) |
O1—N1—C7—C8 | 48.3 (2) | N1—C7—C1—C2 | −50.9 (4) |
C11—C8—C7—N1 | −151.2 (2) | C8—C7—C1—C2 | 63.9 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3···N1i | 0.93 | 2.56 | 3.492 (4) | 179 |
C12—H12C···O1ii | 0.96 | 2.52 | 3.434 (5) | 158 |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | C14H16BrNO5 |
Mr | 358.19 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 10.9020 (4), 8.1780 (3), 17.8127 (8) |
β (°) | 101.622 (3) |
V (Å3) | 1555.56 (11) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 2.67 |
Crystal size (mm) | 0.71 × 0.60 × 0.45 |
Data collection | |
Diffractometer | Stoe IPDS II diffractometer |
Absorption correction | Integration (X-RED32; Stoe & Cie, 2002) |
Tmin, Tmax | 0.327, 0.480 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 15678, 3232, 2696 |
Rint | 0.043 |
(sin θ/λ)max (Å−1) | 0.628 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.101, 1.12 |
No. of reflections | 3232 |
No. of parameters | 193 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.49, −0.93 |
Computer programs: X-AREA (Stoe & Cie, 2002), X-RED32 (Stoe & Cie, 2002), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3···N1i | 0.93 | 2.56 | 3.492 (4) | 179 |
C12—H12C···O1ii | 0.96 | 2.52 | 3.434 (5) | 158 |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) x, y+1, z. |
Acknowledgements
The authors acknowledge the Faculty of Arts and Sciences, Ondokuz Mayıs University, Turkey, for the use of the Stoe IPDS II diffractometer (purchased under grant F.279 of the University Research Fund).
References
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The 1,3-dipolar cycloaddition of nitrones and alkenes is a powerful synthetic device that allows up to three new stereogenic centers to be assembled in a stereospecific manner in a single step (Confalone & Huie, 1988; Torssell, 1988; Frederickson, 1997; Gothelf & Jorgensen, 1998). Among these N and O containing five-membered heterocycles, isoxazolidines and isoxazoline derivatives have emerged as important candidates and have been shown to display useful anticancer and antiviral properties (Chiacchio et al., 2003).
The syntheses of isoxazolidine derivatives is an important subject in organic chemistry because they are found in the structure of most natural compounds and drugs. In recent years, isoxazolidine derivatives have been synthesized in high yield via intermolecular cycloaddition of N-methylnitrone with disubstituted olefins and are employed for biological evaluation.
These isoxazolidines are used in the syntheses of β-lactams (Padwa et al., 1981) which are of value in the treatment of bacterial infections (Ochiai et al., 1967), occur as natural products (Baldwin & Aube, 1987), serve as versatile synthetic intermediates (Padwa et al., 1984), and are biologically interesting compounds. In view of the interest shown in these compounds, we report herein the crystal structure of the title compound, (I).
The overall view and atom-labelling of the molecule of (I) are displayed in Fig. 1. The isoxazolidine ring (O1/N1/C7-C9) adopts an envelope conformation, with atom N1 displaced by 0.326 (2) Å from the plane of the other ring atoms (Cremer & Pople, 1975).
The crystal packing is stabilized by intermolecular C—H···N and C—H···O hydrogen bonds (Table 1). As shown in Fig. 2, these hydrogen bonds form R33(18) motifs which are fused to form ribbon-like structure extending along the b axis.