metal-organic compounds
catena-Poly[[bis(2-hydroxy-2-phenylacetato-κ2O1,O2)zinc(II)]-μ-1,2-di-4-pyridylethane-κ2N:N′]
aDepartment of Fine Chemistry, and Eco-Products and Materials Education Center, Seoul National University of Technology, Seoul 139-743, Republic of Korea, bDepartment of Forest & Environmental Resources, Kyungpook National University, Sangju 742-711, Republic of Korea, and cDepartment of Chemistry and Nano Science, Ewha Womans University, Seoul 120-750, Republic of Korea
*Correspondence e-mail: chealkim@sunt.ac.kr, ymeekim@ewha.ac.kr
The title compound, [Zn(C8H6O3)2(C12H12N2)]n, consists of [Zn(Hopa)2] (H2opa = 2-hydroxy-2-phenylacetic acid or mandelic acid) units bridged by 1,2-di-4-pyridylethane (bpe) ligands, forming a polymeric chain developing parallel to the b axis. The bridging bpe ligand is arranged around a twofold axis passing through the middle of the ethane C—C bond. The geometry around the ZnII ion is distorted octahedral, constructed by four O atoms from two Hopa− ligands and two N atoms from two bridging bpe ligands. O—H⋯O hydrogen bonds link the chains, forming a three-dimensional network.
Related literature
Transition metal ions are the major cationic contributors to the inorganic composition of natural water and biological fluids, see: Daniele et al. (2008). For related structures, see: Balboa et al. (2008); Beghidja et al. (2005); Hao et al. (2009); Lee et al. (2008); Park et al. (2008); Shin et al. (2009); Wermester et al. (2007); Yu et al. (2008).
Experimental
Crystal data
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Data collection: SMART (Bruker, 1997); cell SAINT (Bruker, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536809030281/dn2478sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809030281/dn2478Isup2.hkl
38.0 mg (0.125 mmol) of Zn(NO3)2.6H2O and 38.4 mg (0.25 mmol) of 2-hydroxy-2-phenylacetic acid were dissolved in 4 ml water and carefully layered by 4 ml solution of a mixture of acetone, methanol and ethanol (2/2/2) of 1,2-di-4-pyridylethane ligand (46.0 mg, 0.25 mmol). Suitable crystals of the title compoundfor X-ray analysis were obtained in a few weeks.
All H atoms attached to C atoms were fixed geometrically and treated as riding with C—H = 0.98 Å (methyne),0.97 Å (methylene) or 0.93 Å (aromatic) with Uiso(H) = 1.2Ueq(C). H atom attached to O was located in difference Fourier maps and included in the subsequent
using restraints (O-H= 0.85 (1)Å) with Uiso(H) = 1.5Ueq(O). In the last stage of it was treated as riding on its parent atom.Data collection: SMART (Bruker, 1997); cell
SAINT (Bruker, 1997); data reduction: SAINT (Bruker, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).[Zn(C8H6O3)2(C12H12N2)] | Dx = 1.546 Mg m−3 |
Mr = 551.90 | Mo Kα radiation, λ = 0.71073 Å |
Hexagonal, P6122 | Cell parameters from 1751 reflections |
Hall symbol: P 61 2 (0 0 -1) | θ = 2.2–18.9° |
a = 11.1360 (6) Å | µ = 1.09 mm−1 |
c = 33.110 (3) Å | T = 293 K |
V = 3555.9 (4) Å3 | Rod, colorless |
Z = 6 | 0.10 × 0.05 × 0.05 mm |
F(000) = 1716 |
Bruker SMART CCD diffractometer | 2347 independent reflections |
Radiation source: fine-focus sealed tube | 2045 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.077 |
ϕ and ω scans | θmax = 26.0°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Bruker, 1997) | h = −13→13 |
Tmin = 0.933, Tmax = 0.944 | k = −11→13 |
17715 measured reflections | l = −40→28 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.032 | H-atom parameters constrained |
wR(F2) = 0.068 | w = 1/[σ2(Fo2) + (0.016P)2 + 1.0575P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
2347 reflections | Δρmax = 0.22 e Å−3 |
168 parameters | Δρmin = −0.21 e Å−3 |
1 restraint | Absolute structure: Flack (1983), 870 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.002 (16) |
[Zn(C8H6O3)2(C12H12N2)] | Z = 6 |
Mr = 551.90 | Mo Kα radiation |
Hexagonal, P6122 | µ = 1.09 mm−1 |
a = 11.1360 (6) Å | T = 293 K |
c = 33.110 (3) Å | 0.10 × 0.05 × 0.05 mm |
V = 3555.9 (4) Å3 |
Bruker SMART CCD diffractometer | 2347 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1997) | 2045 reflections with I > 2σ(I) |
Tmin = 0.933, Tmax = 0.944 | Rint = 0.077 |
17715 measured reflections |
R[F2 > 2σ(F2)] = 0.032 | H-atom parameters constrained |
wR(F2) = 0.068 | Δρmax = 0.22 e Å−3 |
S = 1.04 | Δρmin = −0.21 e Å−3 |
2347 reflections | Absolute structure: Flack (1983), 870 Friedel pairs |
168 parameters | Absolute structure parameter: −0.002 (16) |
1 restraint |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Zn1 | 0.73603 (4) | 0.86802 (2) | 0.0833 | 0.01944 (12) | |
O11 | 0.76202 (18) | 0.84579 (18) | 0.02239 (5) | 0.0216 (4) | |
O12 | 0.89644 (18) | 0.82448 (18) | −0.02384 (5) | 0.0245 (5) | |
O13 | 0.89365 (17) | 0.81243 (17) | 0.08319 (5) | 0.0233 (4) | |
H13O | 0.9568 | 0.8433 | 0.1013 | 0.035* | |
N21 | 0.5928 (2) | 0.9386 (2) | 0.07376 (7) | 0.0223 (5) | |
C11 | 0.8619 (3) | 0.8302 (2) | 0.01183 (8) | 0.0191 (6) | |
C12 | 0.9540 (3) | 0.8194 (3) | 0.04470 (8) | 0.0179 (6) | |
H12 | 1.0448 | 0.9043 | 0.0438 | 0.022* | |
C13 | 0.9761 (3) | 0.6975 (3) | 0.03869 (8) | 0.0201 (6) | |
C14 | 1.1078 (3) | 0.7159 (3) | 0.03588 (9) | 0.0284 (7) | |
H14 | 1.1839 | 0.8052 | 0.0368 | 0.034* | |
C15 | 1.1293 (4) | 0.6038 (4) | 0.03167 (10) | 0.0394 (8) | |
H15 | 1.2189 | 0.6185 | 0.0295 | 0.047* | |
C16 | 1.0181 (4) | 0.4716 (4) | 0.03078 (10) | 0.0423 (9) | |
H16 | 1.0316 | 0.3960 | 0.0283 | 0.051* | |
C17 | 0.8862 (4) | 0.4520 (3) | 0.03359 (9) | 0.0382 (8) | |
H17 | 0.8105 | 0.3624 | 0.0328 | 0.046* | |
C18 | 0.8639 (3) | 0.5636 (3) | 0.03754 (8) | 0.0280 (6) | |
H18 | 0.7741 | 0.5486 | 0.0394 | 0.034* | |
C21 | 0.6235 (3) | 1.0429 (3) | 0.04786 (9) | 0.0310 (8) | |
H21 | 0.7018 | 1.0742 | 0.0317 | 0.037* | |
C22 | 0.5445 (3) | 1.1057 (3) | 0.04412 (10) | 0.0357 (8) | |
H22 | 0.5682 | 1.1757 | 0.0252 | 0.043* | |
C23 | 0.4294 (3) | 1.0642 (3) | 0.06862 (10) | 0.0289 (7) | |
C24 | 0.4001 (3) | 0.9599 (3) | 0.09618 (9) | 0.0288 (7) | |
H24 | 0.3251 | 0.9299 | 0.1136 | 0.035* | |
C25 | 0.4832 (3) | 0.9009 (3) | 0.09751 (8) | 0.0252 (6) | |
H25 | 0.4613 | 0.8304 | 0.1161 | 0.030* | |
C26 | 0.3364 (3) | 1.1263 (3) | 0.06523 (12) | 0.0520 (11) | |
H26A | 0.2422 | 1.0517 | 0.0607 | 0.062* | |
H26B | 0.3641 | 1.1857 | 0.0416 | 0.062* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn1 | 0.0209 (2) | 0.01972 (17) | 0.0181 (2) | 0.01044 (12) | 0.000 | −0.00108 (18) |
O11 | 0.0248 (10) | 0.0247 (10) | 0.0185 (10) | 0.0148 (8) | −0.0010 (8) | 0.0008 (8) |
O12 | 0.0311 (12) | 0.0325 (11) | 0.0154 (10) | 0.0200 (9) | 0.0007 (9) | 0.0017 (8) |
O13 | 0.0270 (10) | 0.0352 (10) | 0.0135 (9) | 0.0198 (9) | −0.0050 (9) | −0.0048 (8) |
N21 | 0.0218 (12) | 0.0224 (12) | 0.0213 (14) | 0.0101 (10) | 0.0011 (10) | 0.0006 (10) |
C11 | 0.0231 (13) | 0.0141 (14) | 0.0176 (15) | 0.0074 (12) | −0.0024 (13) | −0.0004 (11) |
C12 | 0.0190 (13) | 0.0189 (13) | 0.0142 (14) | 0.0083 (10) | −0.0012 (11) | −0.0025 (11) |
C13 | 0.0274 (15) | 0.0231 (15) | 0.0113 (13) | 0.0137 (12) | −0.0034 (11) | 0.0004 (12) |
C14 | 0.0297 (17) | 0.0309 (16) | 0.0296 (18) | 0.0189 (14) | −0.0055 (13) | −0.0065 (14) |
C15 | 0.048 (2) | 0.057 (2) | 0.0319 (19) | 0.040 (2) | −0.0055 (17) | −0.0054 (17) |
C16 | 0.080 (3) | 0.049 (2) | 0.0260 (18) | 0.053 (2) | −0.0044 (18) | −0.0044 (16) |
C17 | 0.062 (2) | 0.0242 (17) | 0.0226 (17) | 0.0172 (17) | −0.0001 (16) | −0.0020 (14) |
C18 | 0.0350 (16) | 0.0237 (16) | 0.0215 (15) | 0.0117 (14) | −0.0015 (14) | −0.0003 (13) |
C21 | 0.0241 (16) | 0.0359 (18) | 0.0286 (18) | 0.0118 (14) | 0.0005 (13) | 0.0089 (14) |
C22 | 0.0329 (18) | 0.0310 (18) | 0.0393 (19) | 0.0131 (16) | −0.0083 (15) | 0.0094 (14) |
C23 | 0.0298 (17) | 0.0265 (15) | 0.0344 (19) | 0.0172 (14) | −0.0179 (14) | −0.0153 (14) |
C24 | 0.0275 (17) | 0.0359 (18) | 0.0293 (17) | 0.0206 (14) | 0.0010 (13) | −0.0039 (14) |
C25 | 0.0306 (16) | 0.0239 (16) | 0.0219 (15) | 0.0143 (12) | 0.0033 (13) | 0.0018 (12) |
C26 | 0.039 (2) | 0.0319 (17) | 0.093 (3) | 0.0242 (16) | −0.0356 (19) | −0.0234 (19) |
Zn1—O11 | 2.0707 (17) | C15—C16 | 1.371 (5) |
Zn1—O11i | 2.0707 (17) | C15—H15 | 0.9300 |
Zn1—N21 | 2.125 (2) | C16—C17 | 1.376 (5) |
Zn1—N21i | 2.125 (2) | C16—H16 | 0.9300 |
Zn1—O13i | 2.1332 (17) | C17—C18 | 1.390 (4) |
Zn1—O13 | 2.1332 (17) | C17—H17 | 0.9300 |
O11—C11 | 1.258 (3) | C18—H18 | 0.9300 |
O12—C11 | 1.254 (3) | C21—C22 | 1.376 (4) |
O13—C12 | 1.425 (3) | C21—H21 | 0.9300 |
O13—H13O | 0.8543 | C22—C23 | 1.386 (4) |
N21—C25 | 1.332 (3) | C22—H22 | 0.9300 |
N21—C21 | 1.344 (3) | C23—C24 | 1.381 (4) |
C11—C12 | 1.541 (4) | C23—C26 | 1.511 (4) |
C12—C13 | 1.509 (4) | C24—C25 | 1.378 (4) |
C12—H12 | 0.9800 | C24—H24 | 0.9300 |
C13—C14 | 1.379 (4) | C25—H25 | 0.9300 |
C13—C18 | 1.387 (4) | C26—C26ii | 1.519 (7) |
C14—C15 | 1.390 (4) | C26—H26A | 0.9700 |
C14—H14 | 0.9300 | C26—H26B | 0.9700 |
O11—Zn1—O11i | 166.10 (10) | C13—C14—H14 | 119.3 |
O11—Zn1—N21 | 94.27 (8) | C15—C14—H14 | 119.3 |
O11i—Zn1—N21 | 94.75 (8) | C16—C15—C14 | 119.8 (3) |
O11—Zn1—N21i | 94.75 (8) | C16—C15—H15 | 120.1 |
O11i—Zn1—N21i | 94.27 (8) | C14—C15—H15 | 120.1 |
N21—Zn1—N21i | 98.92 (11) | C15—C16—C17 | 119.3 (3) |
O11—Zn1—O13i | 92.80 (7) | C15—C16—H16 | 120.4 |
O11i—Zn1—O13i | 77.21 (7) | C17—C16—H16 | 120.4 |
N21—Zn1—O13i | 86.60 (7) | C16—C17—C18 | 121.2 (3) |
N21i—Zn1—O13i | 170.28 (8) | C16—C17—H17 | 119.4 |
O11—Zn1—O13 | 77.21 (7) | C18—C17—H17 | 119.4 |
O11i—Zn1—O13 | 92.80 (7) | C13—C18—C17 | 119.8 (3) |
N21—Zn1—O13 | 170.28 (8) | C13—C18—H18 | 120.1 |
N21i—Zn1—O13 | 86.60 (7) | C17—C18—H18 | 120.1 |
O13i—Zn1—O13 | 89.11 (9) | N21—C21—C22 | 123.1 (3) |
C11—O11—Zn1 | 118.26 (16) | N21—C21—H21 | 118.5 |
C12—O13—Zn1 | 114.85 (15) | C22—C21—H21 | 118.5 |
C12—O13—H13O | 109.5 | C21—C22—C23 | 119.8 (3) |
Zn1—O13—H13O | 120.8 | C21—C22—H22 | 120.1 |
C25—N21—C21 | 116.5 (2) | C23—C22—H22 | 120.1 |
C25—N21—Zn1 | 122.35 (18) | C24—C23—C22 | 117.2 (3) |
C21—N21—Zn1 | 120.11 (19) | C24—C23—C26 | 120.4 (3) |
O12—C11—O11 | 125.7 (3) | C22—C23—C26 | 122.4 (3) |
O12—C11—C12 | 115.4 (2) | C25—C24—C23 | 119.3 (3) |
O11—C11—C12 | 118.9 (2) | C25—C24—H24 | 120.4 |
O13—C12—C13 | 110.7 (2) | C23—C24—H24 | 120.4 |
O13—C12—C11 | 108.8 (2) | N21—C25—C24 | 124.0 (3) |
C13—C12—C11 | 113.0 (2) | N21—C25—H25 | 118.0 |
O13—C12—H12 | 108.1 | C24—C25—H25 | 118.0 |
C13—C12—H12 | 108.1 | C23—C26—C26ii | 115.7 (3) |
C11—C12—H12 | 108.1 | C23—C26—H26A | 108.4 |
C14—C13—C18 | 118.5 (3) | C26ii—C26—H26A | 108.4 |
C14—C13—C12 | 121.0 (3) | C23—C26—H26B | 108.4 |
C18—C13—C12 | 120.4 (2) | C26ii—C26—H26B | 108.4 |
C13—C14—C15 | 121.4 (3) | H26A—C26—H26B | 107.4 |
Symmetry codes: (i) x, x−y+1, −z+1/6; (ii) x, x−y+2, −z+1/6. |
D—H···A | D—H | H···A | D···A | D—H···A |
O13—H13O···O12iii | 0.85 | 1.77 | 2.619 (3) | 173 |
Symmetry code: (iii) x−y+1, x, z+1/6. |
Experimental details
Crystal data | |
Chemical formula | [Zn(C8H6O3)2(C12H12N2)] |
Mr | 551.90 |
Crystal system, space group | Hexagonal, P6122 |
Temperature (K) | 293 |
a, c (Å) | 11.1360 (6), 33.110 (3) |
V (Å3) | 3555.9 (4) |
Z | 6 |
Radiation type | Mo Kα |
µ (mm−1) | 1.09 |
Crystal size (mm) | 0.10 × 0.05 × 0.05 |
Data collection | |
Diffractometer | Bruker SMART CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 1997) |
Tmin, Tmax | 0.933, 0.944 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 17715, 2347, 2045 |
Rint | 0.077 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.032, 0.068, 1.04 |
No. of reflections | 2347 |
No. of parameters | 168 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.22, −0.21 |
Absolute structure | Flack (1983), 870 Friedel pairs |
Absolute structure parameter | −0.002 (16) |
Computer programs: SMART (Bruker, 1997), SAINT (Bruker, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O13—H13O···O12i | 0.85 | 1.77 | 2.619 (3) | 173.3 |
Symmetry code: (i) x−y+1, x, z+1/6. |
Acknowledgements
Financial support from the Korea Ministry of the Environment `ET-Human Resource Development Project' and the Cooperative Research Program for Agricultural Science & Technology Development (20070301–036-019–02) is gratefully acknowledged.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
A great attention has been paid to transition metal ions as the major cation contributors to the biologically active molecules such as amino acids, proteins, sugars, nucleotides etc (Daniele, et al., 2008). This interest has driven us to study on the interaction of the transition metal ions with fulvic acids or humic acids. As models to examine the interaction, therefore, we have previously used copper(II) and zinc(II) benzoates as building blocks and reported the structures of copper(II) and zinc(II) benzoates with quinoxaline, 6-methylquinoline, 3-methylquinoline, and di-2-pyridyl ketone(Lee et al., 2008; Yu et al., 2008; Park et al., 2008; Shin et al., 2009).
Mandelic acid (2-hydroxy-2-phenylacetic acid, H2opa) is also one of the simplest bioactive molecules exhibiting a variety of coordinating and supramolecular interaction abilities (Balboa et al., 2008; Beghidja et al.,2005; Hao et al., 2009; Wermester et al., 2007). In order to study the interaction of the biologically active molecule mandelic acid with zinc(II) ion, in the present work, we have employed zinc(II) mandelate as a building block and 1,2-di-4-pyridylethane (bpe) as a ligand. We report herein the structure of new zinc(II) mandelate with 1,2-di-4-pyridylethane.
The crystal structure contains [Zn(Hopa)2] units bridged by bpe ligands forming a polymeric chain developping parallel to the b axis. The bridging 1,2-di-4-pyridylethane (bpe) ligand is arranged around a two fold axis going through the middle of C26—C26ii bond (symmetry code: (ii) x, x-y+2, -z+1/6). The geometry around the ZnII ion is distorted octahedral constructed by four oxygen atoms from two Hopa- and two nitrogen atoms from two bridging bpe ligands (Fig. 1). The occurence of O-H···O hydrogen bonds links the chains to form a three dimensionnal network.